{"id":"https://openalex.org/W4391485680","doi":"https://doi.org/10.1093/gpbjnl/qzae009","title":"CpG Island Definition and Methylation Mapping of the T2T-YAO Genome","display_name":"CpG Island Definition and Methylation Mapping of the T2T-YAO Genome","publication_year":2024,"publication_date":"2024-02-01","ids":{"openalex":"https://openalex.org/W4391485680","doi":"https://doi.org/10.1093/gpbjnl/qzae009","pmid":"https://pubmed.ncbi.nlm.nih.gov/39142816"},"language":"en","primary_location":{"id":"doi:10.1093/gpbjnl/qzae009","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzae009","pdf_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzae009/56545615/qzae009.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzae009/56545615/qzae009.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101717292","display_name":"Ming Xiao","orcid":"https://orcid.org/0000-0001-8608-5903"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]},{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ming Xiao","raw_affiliation_strings":["College of Computer Science, Sichuan University , Chengdu 610065, China","College of Computer Science, Sichuan University, Chengdu, 610065, China"],"raw_orcid":"https://orcid.org/0000-0001-8608-5903","affiliations":[{"raw_affiliation_string":"College of Computer Science, Sichuan University , Chengdu 610065, China","institution_ids":["https://openalex.org/I24185976","https://openalex.org/I4210125143"]},{"raw_affiliation_string":"College of Computer Science, Sichuan University, Chengdu, 610065, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100618502","display_name":"Rui Wei","orcid":"https://orcid.org/0009-0006-8597-5924"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]},{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rui Wei","raw_affiliation_strings":["College of Computer Science, Sichuan University , Chengdu 610065, China","Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences , Hangzhou 310024, China","College of Computer Science, Sichuan University, Chengdu, 610065, China","Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou, 310024, China"],"raw_orcid":"https://orcid.org/0009-0006-8597-5924","affiliations":[{"raw_affiliation_string":"College of Computer Science, Sichuan University , Chengdu 610065, China","institution_ids":["https://openalex.org/I24185976","https://openalex.org/I4210125143"]},{"raw_affiliation_string":"Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences , Hangzhou 310024, China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"College of Computer Science, Sichuan University, Chengdu, 610065, China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou, 310024, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jun Yu","orcid":"https://orcid.org/0000-0001-7599-2700"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Yu","raw_affiliation_strings":["CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing 100101, China","University of Chinese Academy of Sciences , Beijing 100049, China","University of Chinese Academy of Sciences, Beijing, 100049, China","CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation, Beijing, 100101, China"],"raw_orcid":"https://orcid.org/0000-0001-7599-2700","affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing 100101, China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing 100049, China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences, Beijing, 100049, China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation, Beijing, 100101, China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011693067","display_name":"Chujie Gao","orcid":"https://orcid.org/0000-0003-0771-3399"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]},{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chujie Gao","raw_affiliation_strings":["College of Computer Science, Sichuan University , Chengdu 610065, China","College of Computer Science, Sichuan University, Chengdu, 610065, China"],"raw_orcid":"https://orcid.org/0009-0000-3797-7040","affiliations":[{"raw_affiliation_string":"College of Computer Science, Sichuan University , Chengdu 610065, China","institution_ids":["https://openalex.org/I24185976","https://openalex.org/I4210125143"]},{"raw_affiliation_string":"College of Computer Science, Sichuan University, Chengdu, 610065, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057152801","display_name":"Fengyi Yang","orcid":"https://orcid.org/0009-0008-4105-030X"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]},{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fengyi Yang","raw_affiliation_strings":["College of Computer Science, Sichuan University , Chengdu 610065, China","College of Computer Science, Sichuan University, Chengdu, 610065, China"],"raw_orcid":"https://orcid.org/0009-0008-4105-030X","affiliations":[{"raw_affiliation_string":"College of Computer Science, Sichuan University , Chengdu 610065, China","institution_ids":["https://openalex.org/I24185976","https://openalex.org/I4210125143"]},{"raw_affiliation_string":"College of Computer Science, Sichuan University, Chengdu, 610065, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100350625","display_name":"Le Zhang","orcid":"https://orcid.org/0000-0002-3708-1727"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]},{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Le Zhang","raw_affiliation_strings":["College of Computer Science, Sichuan University , Chengdu 610065, China","Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences , Hangzhou 310024, China","College of Computer Science, Sichuan University, Chengdu, 610065, China","Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou, 310024, China"],"raw_orcid":"https://orcid.org/0000-0002-3708-1727","affiliations":[{"raw_affiliation_string":"College of Computer Science, Sichuan University , Chengdu 610065, China","institution_ids":["https://openalex.org/I24185976","https://openalex.org/I4210125143"]},{"raw_affiliation_string":"Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences , Hangzhou 310024, China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"College of Computer Science, Sichuan University, Chengdu, 610065, China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou, 310024, China","institution_ids":["https://openalex.org/I4210165038"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5101717292"],"corresponding_institution_ids":["https://openalex.org/I24185976","https://openalex.org/I4210125143"],"apc_list":{"value":3500,"currency":"USD","value_usd":3500},"apc_paid":{"value":3500,"currency":"USD","value_usd":3500},"fwci":1.5349,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.81196876,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"22","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11677","display_name":"Congenital heart defects research","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9861000180244446,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cpg-site","display_name":"CpG site","score":0.7992100715637207},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.5456661581993103},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5236986875534058},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.4998958110809326},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.46285974979400635},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.45347315073013306},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4458238184452057},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.23362219333648682},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.04395979642868042}],"concepts":[{"id":"https://openalex.org/C140173407","wikidata":"https://www.wikidata.org/wiki/Q1138358","display_name":"CpG site","level":5,"score":0.7992100715637207},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.5456661581993103},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5236986875534058},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.4998958110809326},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.46285974979400635},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.45347315073013306},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4458238184452057},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.23362219333648682},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.04395979642868042}],"mesh":[{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/gpbjnl/qzae009","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzae009","pdf_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzae009/56545615/qzae009.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39142816","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39142816","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, proteomics & bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12016031","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12016031","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12016031/pdf/qzae009.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Genomics Proteomics Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/gpbjnl/qzae009","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzae009","pdf_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzae009/56545615/qzae009.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","display_name":"Life below water","score":0.8199999928474426}],"awards":[{"id":"https://openalex.org/G240145952","display_name":null,"funder_award_id":"2020M673221","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"},{"id":"https://openalex.org/G2813597990","display_name":null,"funder_award_id":"62372316","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6419393087","display_name":null,"funder_award_id":"2020SCU12056","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G6851554750","display_name":null,"funder_award_id":"2018ZX10201002","funder_id":"https://openalex.org/F4320329860","funder_display_name":"National Science and Technology Major Project"},{"id":"https://openalex.org/G8291280291","display_name":null,"funder_award_id":"2021YFF1201200","funder_id":"https://openalex.org/F4320329860","funder_display_name":"National Science and Technology Major Project"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"},{"id":"https://openalex.org/F4320327639","display_name":"Centre Scientifique et Technique du B\u00e2timent","ror":"https://ror.org/02fsd1928"},{"id":"https://openalex.org/F4320329860","display_name":"National Science and Technology Major Project","ror":null},{"id":"https://openalex.org/F4320334792","display_name":"Beijing Institute of Genomics, Chinese Academy of Sciences","ror":"https://ror.org/049gn7z52"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4391485680.pdf"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1996423252","https://openalex.org/W2035618305","https://openalex.org/W2036828137","https://openalex.org/W2036848594","https://openalex.org/W2084748297","https://openalex.org/W2108984616","https://openalex.org/W2125164807","https://openalex.org/W2161399316","https://openalex.org/W2163327652","https://openalex.org/W2328357501","https://openalex.org/W2573737646","https://openalex.org/W2582438798","https://openalex.org/W2765494761","https://openalex.org/W2777047301","https://openalex.org/W2784788330","https://openalex.org/W2804097979","https://openalex.org/W2886223143","https://openalex.org/W2888047927","https://openalex.org/W2947684550","https://openalex.org/W2964632707","https://openalex.org/W2969571588","https://openalex.org/W2970779841","https://openalex.org/W2988126442","https://openalex.org/W3002043276","https://openalex.org/W3007743886","https://openalex.org/W3134250811","https://openalex.org/W3160299205","https://openalex.org/W3171139287","https://openalex.org/W3175812678","https://openalex.org/W3185043261","https://openalex.org/W3208459100","https://openalex.org/W3210196405","https://openalex.org/W4220886647","https://openalex.org/W4225399233","https://openalex.org/W4229447215","https://openalex.org/W4230932396","https://openalex.org/W4280502831","https://openalex.org/W4291302355","https://openalex.org/W4309026856","https://openalex.org/W4311779289","https://openalex.org/W4313598803","https://openalex.org/W4319444982","https://openalex.org/W4323438782","https://openalex.org/W4376132855","https://openalex.org/W4385856832","https://openalex.org/W6745631737","https://openalex.org/W6841454495"],"related_works":["https://openalex.org/W2902329290","https://openalex.org/W2169344098","https://openalex.org/W2139872319","https://openalex.org/W2052355316","https://openalex.org/W2046964473","https://openalex.org/W2107880877","https://openalex.org/W2151182744","https://openalex.org/W2921336251","https://openalex.org/W2944524138","https://openalex.org/W2024490794"],"abstract_inverted_index":{"Precisely":[0],"defining":[1],"and":[2,8,48,58,63,123,162,203],"mapping":[3,68,207],"all":[4],"cytosine":[5],"(C)":[6],"positions":[7],"their":[9,19,60],"clusters,":[10],"known":[11],"as":[12,16,18,177],"CpG":[13,121,126,145,175],"islands":[14],"(CGIs),":[15],"well":[17],"methylation":[20,72,201],"status,":[21],"are":[22,33,85,102,115,165],"pivotal":[23],"for":[24,35],"genome-wide":[25,61,71,188],"epigenetic":[26,189],"studies,":[27],"especially":[28],"when":[29,153],"population-centric":[30],"reference":[31,45],"genomes":[32],"ready":[34],"timely":[36],"application.":[37],"Here,":[38],"we":[39,81,134],"first":[40],"align":[41],"the":[42,78,99,112,130,137,150,160,180,192,210],"two":[43,79,131],"high-quality":[44,200],"genomes,":[46,80],"T2T-YAO":[47,138],"T2T-CHM13,":[49],"from":[50,74,159],"different":[51,117],"ethnic":[52],"backgrounds":[53],"in":[54],"a":[55,143],"base-by-base":[56],"fashion":[57],"compute":[59],"density-defined":[62],"position-defined":[64],"CGIs.":[65],"Second,":[66],"by":[67],"some":[69],"representative":[70],"data":[73,158,202],"selected":[75],"organs":[76],"onto":[77],"find":[82,135],"that":[83,136,148,186],"there":[84],"about":[86],"4.7%-5.8%":[87],"sequence":[88],"divergency":[89],"of":[90,149,191,199],"variable":[91],"categories":[92],"depending":[93],"on":[94,196,209],"quality":[95],"cutoffs.":[96],"Genes":[97],"among":[98],"divergent":[100,113],"sequences":[101,114],"mostly":[103],"associated":[104,110],"with":[105,111,118],"neurological":[106],"functions.":[107],"Moreover,":[108],"CGIs":[109],"significantly":[116],"respect":[119],"to":[120,167,179],"density":[122],"observed":[124],"CpG/expected":[125],"(O/E)":[127],"ratio":[128],"between":[129],"genomes.":[132],"Finally,":[133],"genome":[139,152],"not":[140],"only":[141],"has":[142],"greater":[144],"coverage":[146],"than":[147],"T2T-CHM13":[151,181],"whole-genome":[154],"bisulfite":[155],"sequencing":[156],"(WGBS)":[157],"European":[161],"American":[163],"populations":[164,194],"mapped":[166],"each":[168],"reference,":[169],"but":[170],"also":[171],"shows":[172],"more":[173],"hyper-methylated":[174],"sites":[176],"compared":[178],"genome.":[182],"Our":[183],"study":[184],"suggests":[185],"future":[187],"studies":[190],"Chinese":[193,211],"rely":[195],"both":[197],"acquisition":[198],"subsequent":[204],"precision":[205],"CGI":[206],"based":[208],"T2T":[212],"reference.":[213]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2}],"updated_date":"2026-05-05T08:41:31.759640","created_date":"2025-10-10T00:00:00"}
