{"id":"https://openalex.org/W4391057524","doi":"https://doi.org/10.1093/gpbjnl/qzae007","title":"FP-Zernike: An Open-source Structural Database Construction Toolkit for Fast Structure Retrieval","display_name":"FP-Zernike: An Open-source Structural Database Construction Toolkit for Fast Structure Retrieval","publication_year":2024,"publication_date":"2024-01-19","ids":{"openalex":"https://openalex.org/W4391057524","doi":"https://doi.org/10.1093/gpbjnl/qzae007","pmid":"https://pubmed.ncbi.nlm.nih.gov/38894604"},"language":"en","primary_location":{"id":"doi:10.1093/gpbjnl/qzae007","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzae007","pdf_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzae007/56284997/qzae007.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzae007/56284997/qzae007.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069040594","display_name":"Junhai Qi","orcid":"https://orcid.org/0000-0003-4023-0719"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I4210099336","display_name":"Menlo School","ror":"https://ror.org/01240pn49","country_code":"US","type":"education","lineage":["https://openalex.org/I4210099336"]},{"id":"https://openalex.org/I4210114444","display_name":"Meta (United States)","ror":"https://ror.org/01zbnvs85","country_code":"US","type":"company","lineage":["https://openalex.org/I4210114444"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Junhai Qi","raw_affiliation_strings":["BioMap Research , Menlo Park, CA 94025, USA","Research Center for Mathematics and Interdisciplinary Sciences, Shandong University , Qingdao 266237, China","Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, 266237, China","BioMap Research, Menlo Park, CA, 94025, USA"],"affiliations":[{"raw_affiliation_string":"BioMap Research , Menlo Park, CA 94025, USA","institution_ids":["https://openalex.org/I4210114444"]},{"raw_affiliation_string":"Research Center for Mathematics and Interdisciplinary Sciences, Shandong University , Qingdao 266237, China","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, 266237, China","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"BioMap Research, Menlo Park, CA, 94025, USA","institution_ids":["https://openalex.org/I4210099336"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068167694","display_name":"Chenjie Feng","orcid":"https://orcid.org/0000-0001-7898-9291"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I4210127460","display_name":"Ningxia Medical University","ror":"https://ror.org/02h8a1848","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210127460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenjie Feng","raw_affiliation_strings":["College of Medical Information and Engineering, Ningxia Medical University , Yinchuan 750004, China","Research Center for Mathematics and Interdisciplinary Sciences, Shandong University , Qingdao 266237, China","College of Medical Information and Engineering, Ningxia Medical University, Yinchuan, 750004, China","Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, 266237, China"],"affiliations":[{"raw_affiliation_string":"College of Medical Information and Engineering, Ningxia Medical University , Yinchuan 750004, China","institution_ids":["https://openalex.org/I4210127460"]},{"raw_affiliation_string":"Research Center for Mathematics and Interdisciplinary Sciences, Shandong University , Qingdao 266237, China","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"College of Medical Information and Engineering, Ningxia Medical University, Yinchuan, 750004, China","institution_ids":["https://openalex.org/I4210127460"]},{"raw_affiliation_string":"Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, 266237, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010594657","display_name":"Yulin Shi","orcid":null},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yulin Shi","raw_affiliation_strings":["Research Center for Mathematics and Interdisciplinary Sciences, Shandong University , Qingdao 266237, China","Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, 266237, China"],"affiliations":[{"raw_affiliation_string":"Research Center for Mathematics and Interdisciplinary Sciences, Shandong University , Qingdao 266237, China","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, 266237, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107636936","display_name":"Jianyi Yang","orcid":"https://orcid.org/0000-0003-2912-7737"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianyi Yang","raw_affiliation_strings":["Research Center for Mathematics and Interdisciplinary Sciences, Shandong University , Qingdao 266237, China","Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, 266237, China"],"affiliations":[{"raw_affiliation_string":"Research Center for Mathematics and Interdisciplinary Sciences, Shandong University , Qingdao 266237, China","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, 266237, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100731978","display_name":"Fa Zhang","orcid":"https://orcid.org/0000-0002-2081-9369"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]},{"id":"https://openalex.org/I4210117825","display_name":"Beijing Research Institute of Mechanical and Electrical Technology","ror":"https://ror.org/02bjnsn63","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210117825"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fa Zhang","raw_affiliation_strings":["Institute of Engineering Medicine, Beijing Institute of Technology , Beijing 100081, China","Institute of Engineering Medicine, Beijing Institute of Technology, Beijing, 100081, China"],"affiliations":[{"raw_affiliation_string":"Institute of Engineering Medicine, Beijing Institute of Technology , Beijing 100081, China","institution_ids":["https://openalex.org/I4210117825","https://openalex.org/I125839683"]},{"raw_affiliation_string":"Institute of Engineering Medicine, Beijing Institute of Technology, Beijing, 100081, China","institution_ids":["https://openalex.org/I125839683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100696687","display_name":"Guojun Li","orcid":"https://orcid.org/0000-0003-1581-5897"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guojun Li","raw_affiliation_strings":["Research Center for Mathematics and Interdisciplinary Sciences, Shandong University , Qingdao 266237, China","Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, 266237, China"],"affiliations":[{"raw_affiliation_string":"Research Center for Mathematics and Interdisciplinary Sciences, Shandong University , Qingdao 266237, China","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, 266237, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100690212","display_name":"Renmin Han","orcid":"https://orcid.org/0000-0003-4761-6526"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Renmin Han","raw_affiliation_strings":["Research Center for Mathematics and Interdisciplinary Sciences, Shandong University , Qingdao 266237, China","Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, 266237, China"],"affiliations":[{"raw_affiliation_string":"Research Center for Mathematics and Interdisciplinary Sciences, Shandong University , Qingdao 266237, China","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, 266237, China","institution_ids":["https://openalex.org/I154099455"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5069040594"],"corresponding_institution_ids":["https://openalex.org/I154099455","https://openalex.org/I4210099336","https://openalex.org/I4210114444"],"apc_list":{"value":3500,"currency":"USD","value_usd":3500},"apc_paid":{"value":3500,"currency":"USD","value_usd":3500},"fwci":0.9124,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.71722324,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"22","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/zernike-polynomials","display_name":"Zernike polynomials","score":0.9511765241622925},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7554340362548828},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5918573141098022},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5397719740867615},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5329614281654358},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.435492604970932},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4325534999370575},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4151199758052826},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.39109477400779724},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3334618806838989},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.08506593108177185}],"concepts":[{"id":"https://openalex.org/C92423082","wikidata":"https://www.wikidata.org/wiki/Q132146","display_name":"Zernike polynomials","level":3,"score":0.9511765241622925},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7554340362548828},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5918573141098022},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5397719740867615},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5329614281654358},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.435492604970932},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4325534999370575},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4151199758052826},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.39109477400779724},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3334618806838989},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.08506593108177185},{"id":"https://openalex.org/C165699331","wikidata":"https://www.wikidata.org/wiki/Q461533","display_name":"Wavefront","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/gpbjnl/qzae007","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzae007","pdf_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzae007/56284997/qzae007.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38894604","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38894604","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, proteomics & bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11423855","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11423855","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11423855/pdf/qzae007.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Genomics Proteomics Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/gpbjnl/qzae007","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gpbjnl/qzae007","pdf_url":"https://academic.oup.com/gpb/advance-article-pdf/doi/10.1093/gpbjnl/qzae007/56284997/qzae007.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics and Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.5,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1045301406","display_name":null,"funder_award_id":"62072441","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1075678864","display_name":null,"funder_award_id":"32241027","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1100817172","display_name":null,"funder_award_id":"619320","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1321659228","display_name":null,"funder_award_id":"2021YFF0704300","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2379517498","display_name":null,"funder_award_id":"62072280","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2981938667","display_name":null,"funder_award_id":"Shenzhen","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3085993365","display_name":null,"funder_award_id":"(Grant No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6313107900","display_name":null,"funder_award_id":"T2225007","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7602616423","display_name":null,"funder_award_id":"61932018","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7726157001","display_name":null,"funder_award_id":"Grant No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G79062576","display_name":null,"funder_award_id":"2020YFA0712400","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8467640970","display_name":null,"funder_award_id":"61771009","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322877","display_name":"Natural Science Foundation of Ningxia Province","ror":null},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4391057524.pdf"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1911270099","https://openalex.org/W2021374144","https://openalex.org/W2022058405","https://openalex.org/W2048089273","https://openalex.org/W2051567790","https://openalex.org/W2070741080","https://openalex.org/W2077743314","https://openalex.org/W2090617952","https://openalex.org/W2102245393","https://openalex.org/W2102535700","https://openalex.org/W2114459720","https://openalex.org/W2121429516","https://openalex.org/W2146341019","https://openalex.org/W2152326664","https://openalex.org/W2170693976","https://openalex.org/W2791988510","https://openalex.org/W2793039150","https://openalex.org/W2900437486","https://openalex.org/W2941779667","https://openalex.org/W3006472092","https://openalex.org/W3006830472","https://openalex.org/W3040969795","https://openalex.org/W3104537585","https://openalex.org/W3113235749","https://openalex.org/W3147351619","https://openalex.org/W3161652379","https://openalex.org/W3177828909","https://openalex.org/W4205107473","https://openalex.org/W4226320411","https://openalex.org/W4293475204","https://openalex.org/W4366083959"],"related_works":["https://openalex.org/W1997638723","https://openalex.org/W2547138831","https://openalex.org/W2061580049","https://openalex.org/W2067788074","https://openalex.org/W2183108721","https://openalex.org/W2073465494","https://openalex.org/W3160617640","https://openalex.org/W3141187597","https://openalex.org/W2369242147","https://openalex.org/W2951187577"],"abstract_inverted_index":{"The":[0,211],"release":[1],"of":[2,22,109,124,131,144,161,166,186],"AlphaFold2":[3],"has":[4],"sparked":[5],"a":[6,102,121,209,240],"rapid":[7],"expansion":[8],"in":[9,35,91,134,142,163],"protein":[10,14,57],"model":[11],"databases.":[12],"Efficient":[13],"structure":[15,23,40],"retrieval":[16,145],"is":[17,31,222],"crucial":[18],"for":[19,73,105,174,189],"the":[20,27,32,52,71,128,139,159,164,167,171,175,183,217,227],"analysis":[21],"models,":[24],"while":[25],"measuring":[26],"similarity":[28,66],"between":[29],"structures":[30,58,133],"key":[33],"challenge":[34],"structural":[36,81],"retrieval.":[37,210],"Although":[38],"existing":[39],"alignment":[41],"algorithms":[42],"can":[43],"address":[44],"this":[45,97,187,199],"challenge,":[46],"they":[47],"are":[48,84],"often":[49],"time-consuming.":[50],"Currently,":[51],"state-of-the-art":[53,218],"approach":[54],"involves":[55],"converting":[56],"into":[59],"three-dimensional":[60],"(3D)":[61],"Zernike":[62,76,110,129],"descriptors":[63,77,111,130],"and":[64,83,147,170,197,230],"assessing":[65],"using":[67],"Euclidean":[68],"distance.":[69],"However,":[70],"methods":[72],"computing":[74,106],"3D":[75],"mainly":[78],"rely":[79],"on":[80,113],"surfaces":[82],"predominantly":[85],"web-based,":[86],"thus":[87],"limiting":[88],"their":[89],"application":[90,160],"studying":[92],"custom":[93],"datasets.":[94,136,154],"To":[95],"overcome":[96],"limitation,":[98],"we":[99,157],"developed":[100],"FP-Zernike,":[101],"user-friendly":[103],"toolkit":[104],"different":[107],"types":[108],"based":[112],"feature":[114],"points.":[115],"Users":[116],"simply":[117],"need":[118],"to":[119,126,181,207],"enter":[120],"single":[122],"line":[123],"command":[125],"calculate":[127],"all":[132],"customized":[135],"FP-Zernike":[137,162,221],"outperforms":[138],"leading":[140],"method":[141],"terms":[143],"accuracy":[146,150,219],"binary":[148],"classification":[149],"across":[151],"diverse":[152],"benchmark":[153],"In":[155],"addition,":[156],"showed":[158],"construction":[165],"descriptor":[168],"database":[169],"protocol":[172],"used":[173],"Protein":[176],"Data":[177],"Bank":[178],"(PDB)":[179],"dataset":[180],"facilitate":[182],"local":[184],"deployment":[185],"tool":[188],"interested":[190],"readers.":[191],"Our":[192],"demonstration":[193],"contained":[194],"590,685":[195],"structures,":[196],"at":[198,234,242],"scale,":[200],"our":[201],"system":[202],"required":[203],"only":[204],"4-9":[205],"s":[206],"complete":[208],"experiments":[212],"confirmed":[213],"that":[214],"it":[215],"achieved":[216],"level.":[220],"an":[223],"open-source":[224],"toolkit,":[225],"with":[226],"source":[228],"code":[229],"related":[231],"data":[232],"accessible":[233],"https://ngdc.cncb.ac.cn/biocode/tools/BT007365/releases/0.1,":[235],"as":[236,238],"well":[237],"through":[239],"webserver":[241],"http://www.structbioinfo.cn/.":[243]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
