{"id":"https://openalex.org/W3005995237","doi":"https://doi.org/10.1093/database/baz160","title":"An update on the Symbiotic Genomes Database (SymGenDB): a collection of metadata, genomic, genetic and protein sequences, orthologs and metabolic networks of symbiotic organisms","display_name":"An update on the Symbiotic Genomes Database (SymGenDB): a collection of metadata, genomic, genetic and protein sequences, orthologs and metabolic networks of symbiotic organisms","publication_year":2019,"publication_date":"2019-12-31","ids":{"openalex":"https://openalex.org/W3005995237","doi":"https://doi.org/10.1093/database/baz160","mag":"3005995237","pmid":"https://pubmed.ncbi.nlm.nih.gov/32055857"},"language":"en","primary_location":{"id":"doi:10.1093/database/baz160","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz160","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/database/baz160","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083328422","display_name":"Mariana Reyes\u2010Prieto","orcid":"https://orcid.org/0000-0001-6292-2420"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]},{"id":"https://openalex.org/I4210097149","display_name":"Fundaci\u00f3n para el Fomento de la Investigaci\u00f3n Sanitaria y Biom\u00e9dica de la Comunitat Valenciana","ror":"https://ror.org/0116vew40","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210097149"]},{"id":"https://openalex.org/I4210152685","display_name":"Institute for Integrative Systems Biology","ror":"https://ror.org/05jw4kp39","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I16097986","https://openalex.org/I4210152685"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Mariana Reyes-Prieto","raw_affiliation_strings":["Evolutionary Systems Biology of Symbionts, Institute for Integrative Systems Biology (I2SysBio), Universitat de Val\u00e8ncia, Paterna, Val\u00e8ncia, Spain","Sequencing and Bioinformatics Service, Foundation for the Promotion of Sanitary and Biomedical Research of the Valencia Region (FISABIO), Val\u00e8ncia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Evolutionary Systems Biology of Symbionts, Institute for Integrative Systems Biology (I2SysBio), Universitat de Val\u00e8ncia, Paterna, Val\u00e8ncia, Spain","institution_ids":["https://openalex.org/I16097986","https://openalex.org/I4210152685"]},{"raw_affiliation_string":"Sequencing and Bioinformatics Service, Foundation for the Promotion of Sanitary and Biomedical Research of the Valencia Region (FISABIO), Val\u00e8ncia, Spain","institution_ids":["https://openalex.org/I4210097149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081812114","display_name":"Carlos Vargas-Ch\u00e1vez","orcid":"https://orcid.org/0000-0003-3635-1411"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210135169","display_name":"Institut de Biologia Evolutiva","ror":"https://ror.org/044mj7r89","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I170486558","https://openalex.org/I4210135169"]},{"id":"https://openalex.org/I4210152685","display_name":"Institute for Integrative Systems Biology","ror":"https://ror.org/05jw4kp39","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I16097986","https://openalex.org/I4210152685"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carlos Vargas-Ch\u00e1vez","raw_affiliation_strings":["Evolutionary Systems Biology of Symbionts, Institute for Integrative Systems Biology (I2SysBio), Universitat de Val\u00e8ncia, Paterna, Val\u00e8ncia, Spain","Functional and Evolutionary Genomics, Institute of Evolutionary Biology (IBE), CSIC-Universitat Pompeu Fabra, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Evolutionary Systems Biology of Symbionts, Institute for Integrative Systems Biology (I2SysBio), Universitat de Val\u00e8ncia, Paterna, Val\u00e8ncia, Spain","institution_ids":["https://openalex.org/I16097986","https://openalex.org/I4210152685"]},{"raw_affiliation_string":"Functional and Evolutionary Genomics, Institute of Evolutionary Biology (IBE), CSIC-Universitat Pompeu Fabra, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558","https://openalex.org/I4210135169"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086194329","display_name":"Merc\u00e8 Llabr\u00e9s","orcid":"https://orcid.org/0000-0002-5358-6768"},"institutions":[{"id":"https://openalex.org/I50441567","display_name":"Universitat de les Illes Balears","ror":"https://ror.org/03e10x626","country_code":"ES","type":"education","lineage":["https://openalex.org/I50441567"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Merc\u00e8 Llabr\u00e9s","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of the Balearic Islands, Palma, Balearic Islands, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of the Balearic Islands, Palma, Balearic Islands, Spain","institution_ids":["https://openalex.org/I50441567"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006534449","display_name":"Pere Palmer-Rodr\u00edguez","orcid":"https://orcid.org/0000-0001-5794-6858"},"institutions":[{"id":"https://openalex.org/I50441567","display_name":"Universitat de les Illes Balears","ror":"https://ror.org/03e10x626","country_code":"ES","type":"education","lineage":["https://openalex.org/I50441567"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Pere Palmer","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of the Balearic Islands, Palma, Balearic Islands, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of the Balearic Islands, Palma, Balearic Islands, Spain","institution_ids":["https://openalex.org/I50441567"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044027093","display_name":"Amparo Latorre","orcid":"https://orcid.org/0000-0002-9146-7284"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]},{"id":"https://openalex.org/I4210097149","display_name":"Fundaci\u00f3n para el Fomento de la Investigaci\u00f3n Sanitaria y Biom\u00e9dica de la Comunitat Valenciana","ror":"https://ror.org/0116vew40","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210097149"]},{"id":"https://openalex.org/I4210152685","display_name":"Institute for Integrative Systems Biology","ror":"https://ror.org/05jw4kp39","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I16097986","https://openalex.org/I4210152685"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Amparo Latorre","raw_affiliation_strings":["Evolutionary Systems Biology of Symbionts, Institute for Integrative Systems Biology (I2SysBio), Universitat de Val\u00e8ncia, Paterna, Val\u00e8ncia, Spain","Genomic and Health Area, Foundation for the Promotion of Sanitary and Biomedical Research of the Valencia Region (FISABIO), Val\u00e8ncia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Evolutionary Systems Biology of Symbionts, Institute for Integrative Systems Biology (I2SysBio), Universitat de Val\u00e8ncia, Paterna, Val\u00e8ncia, Spain","institution_ids":["https://openalex.org/I16097986","https://openalex.org/I4210152685"]},{"raw_affiliation_string":"Genomic and Health Area, Foundation for the Promotion of Sanitary and Biomedical Research of the Valencia Region (FISABIO), Val\u00e8ncia, Spain","institution_ids":["https://openalex.org/I4210097149"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004234488","display_name":"Andr\u00e9s Moy\u00e1","orcid":"https://orcid.org/0000-0002-2867-1119"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]},{"id":"https://openalex.org/I4210097149","display_name":"Fundaci\u00f3n para el Fomento de la Investigaci\u00f3n Sanitaria y Biom\u00e9dica de la Comunitat Valenciana","ror":"https://ror.org/0116vew40","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210097149"]},{"id":"https://openalex.org/I4210152685","display_name":"Institute for Integrative Systems Biology","ror":"https://ror.org/05jw4kp39","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I16097986","https://openalex.org/I4210152685"]},{"id":"https://openalex.org/I4210154894","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Epidemiolog\u00eda y Salud P\u00fablica","ror":"https://ror.org/050q0kv47","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4210154894","https://openalex.org/I4387152914"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Andr\u00e9s Moya","raw_affiliation_strings":["CIBER in Epidemiology and Public Health (CIBEResp), Madrid, Spain","Evolutionary Systems Biology of Symbionts, Institute for Integrative Systems Biology (I2SysBio), Universitat de Val\u00e8ncia, Paterna, Val\u00e8ncia, Spain","Genomic and Health Area, Foundation for the Promotion of Sanitary and Biomedical Research of the Valencia Region (FISABIO), Val\u00e8ncia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIBER in Epidemiology and Public Health (CIBEResp), Madrid, Spain","institution_ids":["https://openalex.org/I4210154894"]},{"raw_affiliation_string":"Evolutionary Systems Biology of Symbionts, Institute for Integrative Systems Biology (I2SysBio), Universitat de Val\u00e8ncia, Paterna, Val\u00e8ncia, Spain","institution_ids":["https://openalex.org/I16097986","https://openalex.org/I4210152685"]},{"raw_affiliation_string":"Genomic and Health Area, Foundation for the Promotion of Sanitary and Biomedical Research of the Valencia Region (FISABIO), Val\u00e8ncia, Spain","institution_ids":["https://openalex.org/I4210097149"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5004234488","https://openalex.org/A5083328422"],"corresponding_institution_ids":["https://openalex.org/I16097986","https://openalex.org/I4210097149","https://openalex.org/I4210152685","https://openalex.org/I4210154894"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.5531,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.71199487,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2020","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12134","display_name":"Insect symbiosis and bacterial influences","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12134","display_name":"Insect symbiosis and bacterial influences","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7642143368721008},{"id":"https://openalex.org/keywords/bacterial-genome-size","display_name":"Bacterial genome size","score":0.5857193470001221},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5638238191604614},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.5611821413040161},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.5038236975669861},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.43729424476623535},{"id":"https://openalex.org/keywords/model-organism","display_name":"Model organism","score":0.4216855466365814},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4086560606956482},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2941310405731201},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2805101275444031},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.27229487895965576},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.16441190242767334}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7642143368721008},{"id":"https://openalex.org/C3742359","wikidata":"https://www.wikidata.org/wiki/Q4839988","display_name":"Bacterial genome size","level":4,"score":0.5857193470001221},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5638238191604614},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.5611821413040161},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.5038236975669861},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.43729424476623535},{"id":"https://openalex.org/C19843653","wikidata":"https://www.wikidata.org/wiki/Q213907","display_name":"Model organism","level":3,"score":0.4216855466365814},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4086560606956482},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2941310405731201},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2805101275444031},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27229487895965576},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.16441190242767334}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013559","descriptor_name":"Symbiosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013559","descriptor_name":"Symbiosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013559","descriptor_name":"Symbiosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/database/baz160","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz160","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:32055857","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32055857","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:repositori-api.upf.edu:10230/47225","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/47225","pdf_url":null,"source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:docusalut.com:20.500.13003/19438","is_oa":true,"landing_page_url":"https://hdl.handle.net/20.500.13003/19438","pdf_url":"https://docusalut.com/bitstream/20.500.13003/19438/1/000519579600001.pdf","source":{"id":"https://openalex.org/S4306402504","display_name":"Docusalut (Conselleria de Salut i Consum del Govern de les Illes Balears)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210089844","host_organization_name":"Servei de Salut de les Illes Balears","host_organization_lineage":["https://openalex.org/I4210089844"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"research article"},{"id":"pmh:oai:digital.csic.es:10261/219934","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/219934","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"art\u00edculo"},{"id":"pmh:oai:pubmedcentral.nih.gov:7018611","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7018611","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baz160","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz160","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1275801773","display_name":null,"funder_award_id":"BES-2013","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G1300949500","display_name":null,"funder_award_id":"SAF2013-49788-EXP","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G2105715303","display_name":null,"funder_award_id":"PIE14\u201000045","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G2190014636","display_name":null,"funder_award_id":"Prometeo/2018/A133","funder_id":"https://openalex.org/F4320321864","funder_display_name":"Generalitat Valenciana"},{"id":"https://openalex.org/G2340393674","display_name":null,"funder_award_id":"SAF2015-65878-R","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G244843956","display_name":null,"funder_award_id":"AC15/00022","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G3062142014","display_name":null,"funder_award_id":"PGC2018-096956-B-C43","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G3216971863","display_name":null,"funder_award_id":"SAF2015-65878-R","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G3636476588","display_name":null,"funder_award_id":"PGC2018-096956-B-C43","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G4112877321","display_name":null,"funder_award_id":"SAF2015-65878-R","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G4574528651","display_name":null,"funder_award_id":"PGC2018-096956-B-C43","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G490073602","display_name":null,"funder_award_id":"PGC2018","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G5650879719","display_name":null,"funder_award_id":"DPI2015-67082-P","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G5676223341","display_name":null,"funder_award_id":"PGC2018-096956-B-C43","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G5702505073","display_name":null,"funder_award_id":"DPI2015-67082-P","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G6338157949","display_name":null,"funder_award_id":"DPI2015-67082-P","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G6580460331","display_name":null,"funder_award_id":"BFU2015-64322-C2-1-R","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G6731467812","display_name":null,"funder_award_id":"PGC2018","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G6889597758","display_name":null,"funder_award_id":"SAF2012","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G6893839664","display_name":null,"funder_award_id":"SAF 2012-31187","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G8063416118","display_name":null,"funder_award_id":"PGC2018","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"}],"funders":[{"id":"https://openalex.org/F4320315062","display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades","ror":null},{"id":"https://openalex.org/F4320321739","display_name":"Consejo Nacional de Ciencia y Tecnolog\u00eda","ror":"https://ror.org/059ex5q34"},{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320321864","display_name":"Generalitat Valenciana","ror":"https://ror.org/0097mvx21"},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1607910129","https://openalex.org/W1984438138","https://openalex.org/W2096525273","https://openalex.org/W2102344709","https://openalex.org/W2110256992","https://openalex.org/W2125310261","https://openalex.org/W2159482845","https://openalex.org/W2166410860","https://openalex.org/W2175122459","https://openalex.org/W2302501749","https://openalex.org/W2542090653","https://openalex.org/W2559588208","https://openalex.org/W2612031720","https://openalex.org/W2773787581","https://openalex.org/W4239678514","https://openalex.org/W4243601081","https://openalex.org/W4246954632","https://openalex.org/W4294216483","https://openalex.org/W6678357060","https://openalex.org/W6729074616"],"related_works":["https://openalex.org/W4223896405","https://openalex.org/W2059629050","https://openalex.org/W2258998699","https://openalex.org/W2074740504","https://openalex.org/W3013644380","https://openalex.org/W1996935079","https://openalex.org/W3210243923","https://openalex.org/W2145833061","https://openalex.org/W2889029343","https://openalex.org/W2171737904"],"abstract_inverted_index":{"The":[0],"Symbiotic":[1],"Genomes":[2],"Database":[3],"(SymGenDB;":[4],"http://symbiogenomesdb.uv.es/)":[5],"is":[6],"a":[7,21,44,66,133,150,181],"public":[8],"resource":[9],"of":[10,23,32,68,72,93,106,109,123,153,184],"manually":[11,137],"curated":[12,138],"associations":[13,125],"between":[14,128],"organisms":[15,108,202],"involved":[16,42],"in":[17,43,76,114,136,140],"symbiotic":[18,46],"relationships,":[19],"maintaining":[20],"catalog":[22],"completely":[24],"sequenced/finished":[25],"bacterial":[26,144,155],"genomes":[27,49,145,156],"exclusively.":[28],"It":[29],"originally":[30],"consisted":[31],"three":[33],"modules":[34],"where":[35],"users":[36,118],"could":[37],"search":[38],"for":[39,166,176],"the":[40,69,77,91,100,107,110,141,168,177,198],"bacteria":[41],"specific":[45],"relationship,":[47],"their":[48,51,54,147],"and":[50,102,126,146,186,194],"genes":[52],"(including":[53],"orthologs).":[55],"In":[56],"this":[57],"update,":[58],"we":[59],"present":[60],"an":[61],"additional":[62],"module":[63,85],"that":[64],"includes":[65],"representation":[67],"metabolic":[70,104,124],"network":[71],"each":[73,94,205],"organism":[74,96],"included":[75,113],"database,":[78,142],"as":[79,170,172],"Directed":[80],"Acyclic":[81],"Graphs":[82],"(MetaDAGs).":[83],"This":[84,188],"provides":[86],"unique":[87],"opportunities":[88],"to":[89,98,119,158,191],"explore":[90],"metabolism":[92],"individual":[95],"and/or":[97],"evaluate":[99],"shared":[101],"joint":[103],"capabilities":[105],"same":[111],"genera":[112],"our":[115],"listing,":[116],"allowing":[117],"construct":[120],"predictive":[121],"analyses":[122],"complementation":[127],"systems.":[129],"We":[130,161],"also":[131],"report":[132],"~25%":[134],"increase":[135],"content":[139,185],"i.e.":[143],"associations,":[148],"with":[149],"final":[151],"count":[152],"2328":[154],"associated":[157],"498":[159],"hosts.":[160],"describe":[162],"new":[163,173],"querying":[164],"possibilities":[165],"all":[167],"modules,":[169],"well":[171],"display":[174],"features":[175],"MetaDAGs":[178],"module,":[179],"providing":[180],"relevant":[182],"range":[183],"utility.":[187],"update":[189],"continues":[190],"improve":[192],"SymGenDB":[193],"can":[195],"help":[196],"elucidate":[197],"mechanisms":[199],"by":[200],"which":[201],"depend":[203],"on":[204],"other.":[206]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":2}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
