{"id":"https://openalex.org/W2951325282","doi":"https://doi.org/10.1093/database/baz114","title":"Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery","display_name":"Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2951325282","doi":"https://doi.org/10.1093/database/baz114","mag":"2951325282","pmid":"https://pubmed.ncbi.nlm.nih.gov/31735951"},"language":"en","primary_location":{"id":"doi:10.1093/database/baz114","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz114","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz114/30858102/baz114.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz114/30858102/baz114.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001674341","display_name":"Jean-Philippe F. Gourdine","orcid":"https://orcid.org/0000-0001-9969-8610"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]},{"id":"https://openalex.org/I4210107577","display_name":"Oregon Clinic","ror":"https://ror.org/01eadrh05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210107577"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jean-Philippe F Gourdine","raw_affiliation_strings":["Monarch Initiative, monarchinitiative.org","OHSU Library, Oregon Health & Science University Library, Portland, OR 97239, USA","Oregon Clinical & Translational Research Institute, Oregon Health & Science University, Portland, OR 97239, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Monarch Initiative, monarchinitiative.org","institution_ids":[]},{"raw_affiliation_string":"OHSU Library, Oregon Health & Science University Library, Portland, OR 97239, USA","institution_ids":["https://openalex.org/I165690674"]},{"raw_affiliation_string":"Oregon Clinical & Translational Research Institute, Oregon Health & Science University, Portland, OR 97239, USA","institution_ids":["https://openalex.org/I165690674","https://openalex.org/I4210107577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049409463","display_name":"Matthew Brush","orcid":"https://orcid.org/0000-0002-1048-5019"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]},{"id":"https://openalex.org/I4210107577","display_name":"Oregon Clinic","ror":"https://ror.org/01eadrh05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210107577"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew H Brush","raw_affiliation_strings":["Monarch Initiative, monarchinitiative.org","Oregon Clinical & Translational Research Institute, Oregon Health & Science University, Portland, OR 97239, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Monarch Initiative, monarchinitiative.org","institution_ids":[]},{"raw_affiliation_string":"Oregon Clinical & Translational Research Institute, Oregon Health & Science University, Portland, OR 97239, USA","institution_ids":["https://openalex.org/I165690674","https://openalex.org/I4210107577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041814853","display_name":"Nicole Vasilevsky","orcid":"https://orcid.org/0000-0001-5208-3432"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]},{"id":"https://openalex.org/I4210107577","display_name":"Oregon Clinic","ror":"https://ror.org/01eadrh05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210107577"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicole A Vasilevsky","raw_affiliation_strings":["Monarch Initiative, monarchinitiative.org","Oregon Clinical & Translational Research Institute, Oregon Health & Science University, Portland, OR 97239, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Monarch Initiative, monarchinitiative.org","institution_ids":[]},{"raw_affiliation_string":"Oregon Clinical & Translational Research Institute, Oregon Health & Science University, Portland, OR 97239, USA","institution_ids":["https://openalex.org/I165690674","https://openalex.org/I4210107577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050786158","display_name":"Kent Shefchek","orcid":"https://orcid.org/0000-0001-6439-2224"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kent Shefchek","raw_affiliation_strings":["Linus Pauling Institute, Oregon State University, Corvallis, OR 97331, USA","Monarch Initiative, monarchinitiative.org"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Linus Pauling Institute, Oregon State University, Corvallis, OR 97331, USA","institution_ids":["https://openalex.org/I131249849"]},{"raw_affiliation_string":"Monarch Initiative, monarchinitiative.org","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047602412","display_name":"Sebastian K\u00f6hler","orcid":"https://orcid.org/0000-0002-5316-1399"},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sebastian K\u00f6hler","raw_affiliation_strings":["Charit\u00e9 Centrum f\u00fcr Therapieforschung, Charit\u00e9-Universit\u00e4tsmedizin Berlin Corporate Member of Freie Universit\u00e4t Berlin, Humboldt-Universit\u00e4t zu Berlin and Berlin Institute of Health, Berlin 10117, Germany","Monarch Initiative, monarchinitiative.org"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Charit\u00e9 Centrum f\u00fcr Therapieforschung, Charit\u00e9-Universit\u00e4tsmedizin Berlin Corporate Member of Freie Universit\u00e4t Berlin, Humboldt-Universit\u00e4t zu Berlin and Berlin Institute of Health, Berlin 10117, Germany","institution_ids":["https://openalex.org/I39343248","https://openalex.org/I7877124","https://openalex.org/I75951250"]},{"raw_affiliation_string":"Monarch Initiative, monarchinitiative.org","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040603724","display_name":"Nicolas Matentzoglu","orcid":"https://orcid.org/0000-0002-7356-1779"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nicolas Matentzoglu","raw_affiliation_strings":["European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Cambridge, UK","Monarch Initiative, monarchinitiative.org"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Cambridge, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]},{"raw_affiliation_string":"Monarch Initiative, monarchinitiative.org","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106027423","display_name":"M\u00f3nica Mu\u00f1oz-Torres","orcid":"https://orcid.org/0000-0001-8430-6039"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Monica C Munoz-Torres","raw_affiliation_strings":["Linus Pauling Institute, Oregon State University, Corvallis, OR 97331, USA","Monarch Initiative, monarchinitiative.org"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Linus Pauling Institute, Oregon State University, Corvallis, OR 97331, USA","institution_ids":["https://openalex.org/I131249849"]},{"raw_affiliation_string":"Monarch Initiative, monarchinitiative.org","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050577151","display_name":"Julie A. McMurry","orcid":"https://orcid.org/0000-0002-9353-5498"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Julie A McMurry","raw_affiliation_strings":["Linus Pauling Institute, Oregon State University, Corvallis, OR 97331, USA","Monarch Initiative, monarchinitiative.org"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Linus Pauling Institute, Oregon State University, Corvallis, OR 97331, USA","institution_ids":["https://openalex.org/I131249849"]},{"raw_affiliation_string":"Monarch Initiative, monarchinitiative.org","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101701029","display_name":"Xingmin Zhang","orcid":"https://orcid.org/0000-0002-7284-3950"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xingmin Aaron Zhang","raw_affiliation_strings":["Monarch Initiative, monarchinitiative.org","The Jackson Laboratory for Genomic Medicine, Farmington, CT 06032, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Monarch Initiative, monarchinitiative.org","institution_ids":[]},{"raw_affiliation_string":"The Jackson Laboratory for Genomic Medicine, Farmington, CT 06032, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033225381","display_name":"Peter N. Robinson","orcid":"https://orcid.org/0000-0002-0736-9199"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter N Robinson","raw_affiliation_strings":["Monarch Initiative, monarchinitiative.org","The Jackson Laboratory for Genomic Medicine, Farmington, CT 06032, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Monarch Initiative, monarchinitiative.org","institution_ids":[]},{"raw_affiliation_string":"The Jackson Laboratory for Genomic Medicine, Farmington, CT 06032, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064320417","display_name":"Melissa Haendel","orcid":"https://orcid.org/0000-0001-9114-8737"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]},{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]},{"id":"https://openalex.org/I4210107577","display_name":"Oregon Clinic","ror":"https://ror.org/01eadrh05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210107577"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Melissa A Haendel","raw_affiliation_strings":["Linus Pauling Institute, Oregon State University, Corvallis, OR 97331, USA","Monarch Initiative, monarchinitiative.org","Oregon Clinical & Translational Research Institute, Oregon Health & Science University, Portland, OR 97239, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Linus Pauling Institute, Oregon State University, Corvallis, OR 97331, USA","institution_ids":["https://openalex.org/I131249849"]},{"raw_affiliation_string":"Monarch Initiative, monarchinitiative.org","institution_ids":[]},{"raw_affiliation_string":"Oregon Clinical & Translational Research Institute, Oregon Health & Science University, Portland, OR 97239, USA","institution_ids":["https://openalex.org/I165690674","https://openalex.org/I4210107577"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5001674341"],"corresponding_institution_ids":["https://openalex.org/I165690674","https://openalex.org/I4210107577"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.3419,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.59210794,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"2019","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9854999780654907,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/glycobiology","display_name":"Glycobiology","score":0.8000264167785645},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6900283694267273},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5553457140922546},{"id":"https://openalex.org/keywords/glycomics","display_name":"Glycomics","score":0.5362076163291931},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5281636118888855},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4944934546947479},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.4608219861984253},{"id":"https://openalex.org/keywords/glycan","display_name":"Glycan","score":0.4500772953033447},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3497287631034851},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.29109442234039307},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.27330252528190613},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2580989599227905},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.19193395972251892},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.1340292990207672},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10224118828773499}],"concepts":[{"id":"https://openalex.org/C204641814","wikidata":"https://www.wikidata.org/wiki/Q899224","display_name":"Glycobiology","level":4,"score":0.8000264167785645},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6900283694267273},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5553457140922546},{"id":"https://openalex.org/C106686826","wikidata":"https://www.wikidata.org/wiki/Q741206","display_name":"Glycomics","level":4,"score":0.5362076163291931},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5281636118888855},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4944934546947479},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.4608219861984253},{"id":"https://openalex.org/C206212055","wikidata":"https://www.wikidata.org/wiki/Q2553138","display_name":"Glycan","level":3,"score":0.4500772953033447},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3497287631034851},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.29109442234039307},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.27330252528190613},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2580989599227905},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.19193395972251892},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.1340292990207672},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10224118828773499},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C108625454","wikidata":"https://www.wikidata.org/wiki/Q187126","display_name":"Glycoprotein","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054794","descriptor_name":"Glycomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054794","descriptor_name":"Glycomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054794","descriptor_name":"Glycomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/database/baz114","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz114","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz114/30858102/baz114.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:31735951","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31735951","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:ark:/13030/qt3dr3k3v5","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt3dr3k3v5","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/3dr3k3v5","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database, vol 2019","raw_type":"article"},{"id":"pmh:oai:mouseion.jax.org:stfb2019-1233","is_oa":true,"landing_page_url":"https://mouseion.jax.org/stfb2019/233","pdf_url":null,"source":{"id":"https://openalex.org/S4377196421","display_name":"The Mouseion at the JAXlibrary (Jackson Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210115256","host_organization_name":"Jackson Laboratory","host_organization_lineage":["https://openalex.org/I4210115256"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Research 2019","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6859258","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6859258","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baz114","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz114","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz114/30858102/baz114.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2174079239","display_name":null,"funder_award_id":"U01 TR001395","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G5372621345","display_name":null,"funder_award_id":"U2CHL138346","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7424006909","display_name":null,"funder_award_id":"U2C HL138346","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G7616222319","display_name":null,"funder_award_id":"5 R24 OD011883","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8299004767","display_name":null,"funder_award_id":"R24 OD011883","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2951325282.pdf","grobid_xml":"https://content.openalex.org/works/W2951325282.grobid-xml"},"referenced_works_count":128,"referenced_works":["https://openalex.org/W145329232","https://openalex.org/W1138236323","https://openalex.org/W1544375765","https://openalex.org/W1578331290","https://openalex.org/W1802346448","https://openalex.org/W1820870565","https://openalex.org/W1865473340","https://openalex.org/W1935434993","https://openalex.org/W1963726924","https://openalex.org/W1964255443","https://openalex.org/W1966909343","https://openalex.org/W1971165852","https://openalex.org/W1977432663","https://openalex.org/W1978010807","https://openalex.org/W1983883185","https://openalex.org/W1984900579","https://openalex.org/W1989277387","https://openalex.org/W1989568128","https://openalex.org/W1994089342","https://openalex.org/W1996185349","https://openalex.org/W1996933969","https://openalex.org/W1998795659","https://openalex.org/W2007058211","https://openalex.org/W2007236926","https://openalex.org/W2008857142","https://openalex.org/W2012361142","https://openalex.org/W2013180631","https://openalex.org/W2014865312","https://openalex.org/W2018586077","https://openalex.org/W2019151266","https://openalex.org/W2025349319","https://openalex.org/W2029586927","https://openalex.org/W2031291557","https://openalex.org/W2038976546","https://openalex.org/W2040712196","https://openalex.org/W2042304168","https://openalex.org/W2057267126","https://openalex.org/W2057574223","https://openalex.org/W2059282001","https://openalex.org/W2064222888","https://openalex.org/W2070903093","https://openalex.org/W2071754924","https://openalex.org/W2072865927","https://openalex.org/W2089542491","https://openalex.org/W2097906936","https://openalex.org/W2098940647","https://openalex.org/W2103017472","https://openalex.org/W2106689890","https://openalex.org/W2113142309","https://openalex.org/W2114530797","https://openalex.org/W2122559203","https://openalex.org/W2124769526","https://openalex.org/W2127003135","https://openalex.org/W2127006085","https://openalex.org/W2128508252","https://openalex.org/W2131342458","https://openalex.org/W2136630347","https://openalex.org/W2146047637","https://openalex.org/W2149369491","https://openalex.org/W2153996114","https://openalex.org/W2155158051","https://openalex.org/W2157079123","https://openalex.org/W2158922990","https://openalex.org/W2159225614","https://openalex.org/W2160871722","https://openalex.org/W2162151166","https://openalex.org/W2174602966","https://openalex.org/W2177317049","https://openalex.org/W2230203535","https://openalex.org/W2246559112","https://openalex.org/W2253891902","https://openalex.org/W2289948253","https://openalex.org/W2294516783","https://openalex.org/W2320983896","https://openalex.org/W2401254175","https://openalex.org/W2405784650","https://openalex.org/W2524986635","https://openalex.org/W2528779404","https://openalex.org/W2558643140","https://openalex.org/W2559588208","https://openalex.org/W2560829579","https://openalex.org/W2572747554","https://openalex.org/W2605130544","https://openalex.org/W2612033696","https://openalex.org/W2617609986","https://openalex.org/W2618894344","https://openalex.org/W2624086276","https://openalex.org/W2735021552","https://openalex.org/W2736977076","https://openalex.org/W2743571801","https://openalex.org/W2753100975","https://openalex.org/W2761866254","https://openalex.org/W2781129201","https://openalex.org/W2790402282","https://openalex.org/W2796918229","https://openalex.org/W2799324424","https://openalex.org/W2799883338","https://openalex.org/W2802451879","https://openalex.org/W2802673730","https://openalex.org/W2805955461","https://openalex.org/W2807175130","https://openalex.org/W2887578848","https://openalex.org/W2888058690","https://openalex.org/W2889721499","https://openalex.org/W2896020849","https://openalex.org/W2896169521","https://openalex.org/W2897030725","https://openalex.org/W2898031839","https://openalex.org/W2898588487","https://openalex.org/W2899915536","https://openalex.org/W2901332105","https://openalex.org/W2905274981","https://openalex.org/W2906452116","https://openalex.org/W2909934462","https://openalex.org/W2918819576","https://openalex.org/W2953110573","https://openalex.org/W2963784716","https://openalex.org/W3103232823","https://openalex.org/W4211068592","https://openalex.org/W4212995480","https://openalex.org/W4233698560","https://openalex.org/W4234674830","https://openalex.org/W4236273750","https://openalex.org/W4293048996","https://openalex.org/W4300411805","https://openalex.org/W6750965312","https://openalex.org/W6756920221","https://openalex.org/W6842136665"],"related_works":["https://openalex.org/W3123053326","https://openalex.org/W2344851944","https://openalex.org/W2296117609","https://openalex.org/W4407475330","https://openalex.org/W4386770953","https://openalex.org/W2191209888","https://openalex.org/W2477333915","https://openalex.org/W4391748392","https://openalex.org/W1974060054","https://openalex.org/W125629381"],"abstract_inverted_index":{"While":[0],"abnormalities":[1],"related":[2,151],"to":[3,52,54,147,168,182,185],"carbohydrates":[4],"(glycans)":[5],"are":[6,26],"frequent":[7],"for":[8,49,173],"patients":[9],"with":[10,43],"rare":[11,63,190],"and":[12,41,87,111,115,125,143,150,161,180],"undiagnosed":[13],"diseases":[14,36,64,152],"as":[15,17,92],"well":[16,28],"in":[18,30,97,175],"many":[19],"common":[20],"diseases,":[21],"these":[22,45],"glycan-related":[23,35,120],"phenotypes":[24],"(glycophenotypes)":[25],"not":[27],"represented":[29,40],"knowledge":[31,133],"bases":[32],"(KBs).":[33],"If":[34],"were":[37],"more":[38],"robustly":[39],"curated":[42],"glycophenotypes,":[44],"could":[46,139],"be":[47],"used":[48],"molecular":[50],"phenotyping":[51],"help":[53],"realize":[55],"the":[56,98,101,109,117,135,154,166],"goals":[57],"of":[58,62,69,79,100,113,119,137,177,189],"precision":[59],"medicine.":[60],"Diagnosis":[61],"by":[65,75],"computational":[66],"cross-species":[67],"comparison":[68],"genotype-phenotype":[70],"data":[71],"has":[72],"been":[73],"facilitated":[74],"leveraging":[76],"ontological":[77],"representations":[78],"clinical":[80],"phenotypes,":[81],"using":[82],"Human":[83],"Phenotype":[84,94,156],"Ontology":[85,95,157],"(HPO),":[86],"model":[88],"organism":[89],"ontologies":[90],"such":[91],"Mammalian":[93],"(MP)":[96],"context":[99],"Monarch":[102,160],"Initiative.":[103],"In":[104],"this":[105],"article,":[106],"we":[107],"discuss":[108],"importance":[110],"complexity":[112],"glycobiology":[114],"review":[116],"structure":[118],"content":[121],"from":[122],"existing":[123],"KBs":[124],"biological":[126],"ontologies.":[127],"We":[128,164],"show":[129],"how":[130],"semantically":[131],"structuring":[132],"about":[134],"annotation":[136],"glycophenotypes":[138,149],"enhance":[140],"disease":[141],"diagnosis,":[142],"propose":[144],"a":[145],"solution":[146],"integrate":[148],"into":[153],"Unified":[155],"(uPheno),":[158],"HPO,":[159],"other":[162],"KBs.":[163],"encourage":[165],"community":[167],"practice":[169],"good":[170],"identifier":[171],"hygiene":[172],"glycans":[174],"support":[176],"semantic":[178],"analysis,":[179],"clinicians":[181],"add":[183],"glycomics":[184],"their":[186],"diagnostic":[187],"analyses":[188],"diseases.":[191]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2018,"cited_by_count":2}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
