{"id":"https://openalex.org/W2988432401","doi":"https://doi.org/10.1093/database/baz111","title":"SCNBase: a genomics portal for the soybean cyst nematode (Heterodera glycines)","display_name":"SCNBase: a genomics portal for the soybean cyst nematode (Heterodera glycines)","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2988432401","doi":"https://doi.org/10.1093/database/baz111","mag":"2988432401","pmid":"https://pubmed.ncbi.nlm.nih.gov/31680133"},"language":"en","primary_location":{"id":"doi:10.1093/database/baz111","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz111","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz111/30699152/baz111.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz111/30699152/baz111.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002599085","display_name":"Rick E. Masonbrink","orcid":null},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rick Masonbrink","raw_affiliation_strings":["Genome Informatics Facility, Iowa State University, Osborne Dr, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genome Informatics Facility, Iowa State University, Osborne Dr, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059174999","display_name":"Tom Maier","orcid":null},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tom R Maier","raw_affiliation_strings":["Department of Plant Pathology and Microbiology, Iowa State University, Pammel Dr, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology and Microbiology, Iowa State University, Pammel Dr, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011173783","display_name":"Arun S. Seetharam","orcid":"https://orcid.org/0000-0002-6789-9298"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arun S Seetharam","raw_affiliation_strings":["Genome Informatics Facility, Iowa State University, Osborne Dr, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genome Informatics Facility, Iowa State University, Osborne Dr, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023280122","display_name":"Parijat S. Juvale","orcid":"https://orcid.org/0000-0003-2700-2359"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Parijat S Juvale","raw_affiliation_strings":["Department of Plant Pathology and Microbiology, Iowa State University, Pammel Dr, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology and Microbiology, Iowa State University, Pammel Dr, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053074459","display_name":"Levi Baber","orcid":"https://orcid.org/0000-0002-0691-2962"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Levi Baber","raw_affiliation_strings":["Research IT, Iowa State University, Osborne Dr, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research IT, Iowa State University, Osborne Dr, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009054130","display_name":"Thomas J. Baum","orcid":"https://orcid.org/0000-0001-9241-3141"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas J Baum","raw_affiliation_strings":["Department of Plant Pathology and Microbiology, Iowa State University, Pammel Dr, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology and Microbiology, Iowa State University, Pammel Dr, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070520368","display_name":"Andrew Severin","orcid":"https://orcid.org/0000-0002-8015-9665"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Andrew J Severin","raw_affiliation_strings":["Genome Informatics Facility, Iowa State University, Osborne Dr, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genome Informatics Facility, Iowa State University, Osborne Dr, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5070520368"],"corresponding_institution_ids":["https://openalex.org/I173911158"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.8695,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.83129479,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"2019","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11179","display_name":"Nematode management and characterization studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11179","display_name":"Nematode management and characterization studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11470","display_name":"Legume Nitrogen Fixing Symbiosis","score":0.9623000025749207,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12683","display_name":"Studies on Chitinases and Chitosanases","score":0.9593999981880188,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/heterodera","display_name":"Heterodera","score":0.8857479095458984},{"id":"https://openalex.org/keywords/soybean-cyst-nematode","display_name":"Soybean cyst nematode","score":0.8837506771087646},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.533959686756134},{"id":"https://openalex.org/keywords/cyst","display_name":"Cyst","score":0.5223233103752136},{"id":"https://openalex.org/keywords/nematode","display_name":"Nematode","score":0.5082261562347412},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.44708847999572754},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15660634636878967},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15442019701004028},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.13243892788887024},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.12121668457984924},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.11601081490516663},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.07617166638374329}],"concepts":[{"id":"https://openalex.org/C2778364763","wikidata":"https://www.wikidata.org/wiki/Q2711313","display_name":"Heterodera","level":3,"score":0.8857479095458984},{"id":"https://openalex.org/C2779553229","wikidata":"https://www.wikidata.org/wiki/Q960305","display_name":"Soybean cyst nematode","level":3,"score":0.8837506771087646},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.533959686756134},{"id":"https://openalex.org/C2780597408","wikidata":"https://www.wikidata.org/wiki/Q193211","display_name":"Cyst","level":2,"score":0.5223233103752136},{"id":"https://openalex.org/C2778830712","wikidata":"https://www.wikidata.org/wiki/Q5185","display_name":"Nematode","level":2,"score":0.5082261562347412},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.44708847999572754},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15660634636878967},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15442019701004028},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.13243892788887024},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.12121668457984924},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.11601081490516663},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.07617166638374329}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017168","descriptor_name":"Rhabditida","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017168","descriptor_name":"Rhabditida","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017168","descriptor_name":"Rhabditida","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017168","descriptor_name":"Rhabditida","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049751","descriptor_name":"Genome, Helminth","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049751","descriptor_name":"Genome, Helminth","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049751","descriptor_name":"Genome, Helminth","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049751","descriptor_name":"Genome, Helminth","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baz111","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz111","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz111/30699152/baz111.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:31680133","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31680133","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:dr.lib.iastate.edu:20.500.12876/Yr3KgqPr","is_oa":false,"landing_page_url":"https://dr.lib.iastate.edu/handle/20.500.12876/Yr3KgqPr","pdf_url":null,"source":{"id":"https://openalex.org/S4377196104","display_name":"Iowa State University Digital Repository (Iowa State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173911158","host_organization_name":"Iowa State University","host_organization_lineage":["https://openalex.org/I173911158"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://doi.org/10.1093/database/baz111","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5823468","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6853641","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baz111","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz111","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz111/30699152/baz111.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1012619510","display_name":null,"funder_award_id":"ACI-1445606","funder_id":"https://openalex.org/F4320335353","funder_display_name":"National Science Foundation of Sri Lanka"},{"id":"https://openalex.org/G170854484","display_name":null,"funder_award_id":"ACI-1548562","funder_id":"https://openalex.org/F4320335353","funder_display_name":"National Science Foundation of Sri Lanka"}],"funders":[{"id":"https://openalex.org/F4320316793","display_name":"North Central Soybean Research Program","ror":null},{"id":"https://openalex.org/F4320335353","display_name":"National Science Foundation of Sri Lanka","ror":"https://ror.org/010xaa060"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2988432401.pdf"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W185728743","https://openalex.org/W568958565","https://openalex.org/W1411252395","https://openalex.org/W1519299348","https://openalex.org/W1574182225","https://openalex.org/W1900937478","https://openalex.org/W1967204795","https://openalex.org/W1980133202","https://openalex.org/W1988400448","https://openalex.org/W1990531747","https://openalex.org/W1991524220","https://openalex.org/W1994587807","https://openalex.org/W1996392212","https://openalex.org/W2027468968","https://openalex.org/W2043701535","https://openalex.org/W2060751879","https://openalex.org/W2092785838","https://openalex.org/W2103017472","https://openalex.org/W2103880356","https://openalex.org/W2104169239","https://openalex.org/W2106074364","https://openalex.org/W2106744560","https://openalex.org/W2115295497","https://openalex.org/W2116950295","https://openalex.org/W2122546565","https://openalex.org/W2123171788","https://openalex.org/W2125696074","https://openalex.org/W2127217885","https://openalex.org/W2129246904","https://openalex.org/W2131175425","https://openalex.org/W2131271579","https://openalex.org/W2140970550","https://openalex.org/W2151397621","https://openalex.org/W2151569078","https://openalex.org/W2155824171","https://openalex.org/W2156095709","https://openalex.org/W2159562655","https://openalex.org/W2161781345","https://openalex.org/W2165892239","https://openalex.org/W2168292723","https://openalex.org/W2170738491","https://openalex.org/W2179282661","https://openalex.org/W2336016333","https://openalex.org/W2411534650","https://openalex.org/W2414289123","https://openalex.org/W2474869522","https://openalex.org/W2478883405","https://openalex.org/W2559577985","https://openalex.org/W2588193867","https://openalex.org/W2729982306","https://openalex.org/W2806045771","https://openalex.org/W2896232663","https://openalex.org/W2911819023","https://openalex.org/W2951257985","https://openalex.org/W2951493739","https://openalex.org/W2952868040"],"related_works":["https://openalex.org/W16591529","https://openalex.org/W2106712563","https://openalex.org/W1967663500","https://openalex.org/W2140227801","https://openalex.org/W2332146152","https://openalex.org/W1491612156","https://openalex.org/W34201683","https://openalex.org/W2006521069","https://openalex.org/W2325683487","https://openalex.org/W2149597588"],"abstract_inverted_index":{"Soybean":[0],"is":[1,27],"an":[2],"important":[3,31],"worldwide":[4],"crop,":[5],"and":[6,74,82,99,103,115,127,138,150,156,162,176,233,240],"farmers":[7],"continue":[8],"to":[9,15,80,193,209,257,265],"experience":[10],"significant":[11],"yield":[12],"loss":[13],"due":[14],"the":[16,29,50,59,64,69,94,118,214],"soybean":[17,35],"cyst":[18],"nematode":[19,166,258],"(SCN),":[20],"Heterodera":[21],"glycines.":[22],"This":[23],"soil-borne":[24],"roundworm":[25],"parasite":[26],"rated":[28],"most":[30],"pathogen":[32],"problem":[33,66],"in":[34],"production.":[36],"The":[37],"infective":[38],"nematodes":[39],"enter":[40],"into":[41],"complex":[42],"interactions":[43],"with":[44,61,107,134,164,186,247],"their":[45],"host":[46],"plant":[47,54],"by":[48,245],"inducing":[49],"development":[51,70],"of":[52,71,78,120,125,158,204],"specialized":[53],"feeding":[55],"cells":[56],"that":[57],"provide":[58],"parasites":[60],"nourishment.":[62],"Addressing":[63],"SCN":[65,95,143,174,215,270],"will":[67,262],"require":[68],"genomic":[72,110,126,144,159,234],"resources":[73,235,256],"a":[75,90,123,191,210,228],"global":[76],"collaboration":[77],"scientists":[79,261],"analyze":[81],"use":[83,244],"these":[84,255],"resources.":[85],"SCNBase.org":[86],"was":[87],"designed":[88],"as":[89,227],"collaborative":[91],"hub":[92],"for":[93,202,243,250],"genome.":[96],"All":[97],"data":[98,129],"analyses":[100,145],"are":[101,131],"downloadable":[102],"can":[104,236],"be":[105,238,263],"analyzed":[106],"three":[108],"integrated":[109],"tools:":[111],"JBrowse,":[112],"Feature":[113],"Search":[114],"BLAST.":[116],"At":[117],"time":[119],"this":[121],"writing,":[122],"number":[124],"transcriptomic":[128],"sets":[130],"already":[132],"available,":[133],"43":[135],"JBrowse":[136],"tracks":[137],"21":[139],"category":[140],"pages":[141],"describing":[142],"on":[146,213],"gene":[147,182,188],"predictions,":[148],"transcriptome":[149],"read":[151],"alignments,":[152],"effector-like":[153],"genes,":[154],"expansion":[155],"contraction":[157],"repeats,":[160],"orthology":[161],"synteny":[163],"related":[165,195],"species,":[167],"Single":[168],"Nucleotide":[169],"Polymorphism":[170],"(SNPs)":[171],"from":[172],"15":[173],"populations":[175],"novel":[177],"splice":[178],"sites.":[179],"Standard":[180],"functional":[181,200],"annotations":[183,189,201,207],"were":[184],"supplemented":[185],"orthologous":[187],"using":[190],"comparison":[192],"nine":[194],"plant-parasitic":[196],"nematodes,":[197],"thereby":[198],"enabling":[199],"85%":[203],"genes.":[205,223],"These":[206],"led":[208],"greater":[211],"grasp":[212],"effectorome,":[216],"which":[217],"include":[218],"over":[219],"3324":[220],"putative":[221],"effector":[222],"By":[224,253],"designing":[225],"SCNBase":[226],"hub,":[229],"future":[230],"research":[231,259],"findings":[232],"easily":[237],"uploaded":[239],"made":[241],"available":[242],"others":[246],"minimal":[248],"needs":[249],"further":[251],"curation.":[252],"providing":[254],"community,":[260],"empowered":[264],"develop":[266],"novel,":[267],"more":[268],"effective":[269],"management":[271],"tools.":[272]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2026-06-23T13:55:30.953635","created_date":"2025-10-10T00:00:00"}
