{"id":"https://openalex.org/W2973078239","doi":"https://doi.org/10.1093/database/baz096","title":"Benchmarking database systems for Genomic Selection implementation","display_name":"Benchmarking database systems for Genomic Selection implementation","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2973078239","doi":"https://doi.org/10.1093/database/baz096","mag":"2973078239","pmid":"https://pubmed.ncbi.nlm.nih.gov/31508797"},"language":"en","primary_location":{"id":"doi:10.1093/database/baz096","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz096","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz096/29956991/baz096.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz096/29956991/baz096.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075658980","display_name":"Yaw Nti-Addae","orcid":"https://orcid.org/0000-0001-8398-9982"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210099114","display_name":"Czech Academy of Sciences, Institute of Biotechnology","ror":"https://ror.org/00wzqmx94","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210099114"]}],"countries":["CZ","US"],"is_corresponding":true,"raw_author_name":"Yaw Nti-Addae","raw_affiliation_strings":["Institute of Biotechnology, Cornell University"],"raw_orcid":"https://orcid.org/0000-0001-8398-9982","affiliations":[{"raw_affiliation_string":"Institute of Biotechnology, Cornell University","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4210099114"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103601205","display_name":"Dave Matthews","orcid":null},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dave Matthews","raw_affiliation_strings":["Boyce Thompson Institute"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boyce Thompson Institute","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004812183","display_name":"Victor Jun Ulat","orcid":null},"institutions":[{"id":"https://openalex.org/I21740220","display_name":"Centro Internacional de Mejoramiento de Ma\u00edz Y Trigo","ror":"https://ror.org/03gvhpa76","country_code":"MX","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I21740220"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Victor Jun Ulat","raw_affiliation_strings":["Centro Internacional de Mejoramiento de Ma\u00edz y Trigo (CIMMYT)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro Internacional de Mejoramiento de Ma\u00edz y Trigo (CIMMYT)","institution_ids":["https://openalex.org/I21740220"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019464082","display_name":"Raza M. Syed","orcid":"https://orcid.org/0000-0002-4047-2489"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210099114","display_name":"Czech Academy of Sciences, Institute of Biotechnology","ror":"https://ror.org/00wzqmx94","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210099114"]}],"countries":["CZ","US"],"is_corresponding":false,"raw_author_name":"Raza Syed","raw_affiliation_strings":["Institute of Biotechnology, Cornell University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biotechnology, Cornell University","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4210099114"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000218045","display_name":"Guilhem Semp\u00e9r\u00e9","orcid":"https://orcid.org/0000-0001-7429-2091"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Guilhem Semp\u00e9r\u00e9","raw_affiliation_strings":["INTERTRYP, Univ Montpellier, CIRAD, IRD"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INTERTRYP, Univ Montpellier, CIRAD, IRD","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I4210166444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090555367","display_name":"Adrien P\u00e9tel","orcid":null},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I4210135772","display_name":"Peuplements v\u00e9g\u00e9taux et bioagresseurs en milieu tropical","ror":"https://ror.org/03mj14b52","country_code":"RE","type":"facility","lineage":["https://openalex.org/I131077856","https://openalex.org/I24715933","https://openalex.org/I4210135772"]}],"countries":["FR","RE"],"is_corresponding":false,"raw_author_name":"Adrien P\u00e9tel","raw_affiliation_strings":["UMR PVBMT, CIRAD"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UMR PVBMT, CIRAD","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I4210135772"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072934276","display_name":"Jon Renner","orcid":null},"institutions":[{"id":"https://openalex.org/I2800403580","display_name":"University of Minnesota System","ror":"https://ror.org/03grvy078","country_code":"US","type":"education","lineage":["https://openalex.org/I2800403580"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jon Renner","raw_affiliation_strings":["University of Minnesota"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Minnesota","institution_ids":["https://openalex.org/I2800403580"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063266192","display_name":"Pierre Larmande","orcid":"https://orcid.org/0000-0002-2923-9790"},"institutions":[{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210117822","display_name":"Diversit\u00e9, adaptation et d\u00e9veloppement des plantes","ror":"https://ror.org/02banhz78","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210117822","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pierre Larmande","raw_affiliation_strings":["UMR DIADE, IRD, University of Montpellier"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UMR DIADE, IRD, University of Montpellier","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I4210117822","https://openalex.org/I4210166444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045221753","display_name":"Valentin Guignon","orcid":"https://orcid.org/0000-0003-0903-6811"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Valentin Guignon","raw_affiliation_strings":["Bioversity International"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioversity International","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018590590","display_name":"Elizabeth Jones","orcid":"https://orcid.org/0000-0002-6707-9660"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210099114","display_name":"Czech Academy of Sciences, Institute of Biotechnology","ror":"https://ror.org/00wzqmx94","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210099114"]}],"countries":["CZ","US"],"is_corresponding":false,"raw_author_name":"Elizabeth Jones","raw_affiliation_strings":["Institute of Biotechnology, Cornell University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biotechnology, Cornell University","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4210099114"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078307014","display_name":"Kelly R. Robbins","orcid":"https://orcid.org/0000-0001-9522-9585"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kelly Robbins","raw_affiliation_strings":["Section of Plant Breeding and Genetics, School of Integrative Plants Sciences, Cornell University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Section of Plant Breeding and Genetics, School of Integrative Plants Sciences, Cornell University","institution_ids":["https://openalex.org/I205783295"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5075658980"],"corresponding_institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4210099114"],"apc_list":{"value":2729,"currency":"USD","value_usd":2729},"apc_paid":{"value":2729,"currency":"USD","value_usd":2729},"fwci":1.1427,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.79631902,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2019","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.5781999826431274,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.5781999826431274,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.22100000083446503,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.0544000007212162,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.9362851977348328},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.6882221102714539},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6773762702941895},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5546082854270935},{"id":"https://openalex.org/keywords/genomic-selection","display_name":"Genomic selection","score":0.5545032024383545},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3472415804862976},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3331798315048218},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3330240845680237},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.14032360911369324},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.12139838933944702},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09825399518013}],"concepts":[{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.9362851977348328},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.6882221102714539},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6773762702941895},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5546082854270935},{"id":"https://openalex.org/C2992444039","wikidata":"https://www.wikidata.org/wiki/Q17145598","display_name":"Genomic selection","level":5,"score":0.5545032024383545},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3472415804862976},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3331798315048218},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3330240845680237},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.14032360911369324},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.12139838933944702},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09825399518013},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/baz096","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz096","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz096/29956991/baz096.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:31508797","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31508797","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6737464","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6737464","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"pmh:oai:HAL:hal-05174256v1","is_oa":true,"landing_page_url":"https://hal.science/hal-05174256v1/document","pdf_url":null,"source":{"id":"https://openalex.org/S4406922276","display_name":"INRIA a CCSD electronic archive server","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database - The journal of Biological Databases and Curation, 2019, 2019, pp.baz096. &#x27E8;10.1093/database/baz096&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:agritrop.cirad.fr:593557","is_oa":true,"landing_page_url":"http://agritrop.cirad.fr/593557/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402311","display_name":"Agritrop (Cirad)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I131077856","host_organization_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","host_organization_lineage":["https://openalex.org/I131077856"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/database/baz096","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz096","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz096/29956991/baz096.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3470913291","display_name":null,"funder_award_id":"1504\u2013004","funder_id":"https://openalex.org/F4320309924","funder_display_name":"Agropolis Fondation"},{"id":"https://openalex.org/G8291310743","display_name":null,"funder_award_id":"E-SPACE (1504-004)","funder_id":"https://openalex.org/F4320306137","funder_display_name":"Bill and Melinda Gates Foundation"}],"funders":[{"id":"https://openalex.org/F4320306137","display_name":"Bill and Melinda Gates Foundation","ror":"https://ror.org/0456r8d26"},{"id":"https://openalex.org/F4320309924","display_name":"Agropolis Fondation","ror":"https://ror.org/05kpkpg04"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2973078239.pdf","grobid_xml":"https://content.openalex.org/works/W2973078239.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W149722931","https://openalex.org/W1800630092","https://openalex.org/W1928998639","https://openalex.org/W1972216668","https://openalex.org/W2043116503","https://openalex.org/W2053135018","https://openalex.org/W2067072887","https://openalex.org/W2098919825","https://openalex.org/W2141040548","https://openalex.org/W2144844496","https://openalex.org/W2146371141","https://openalex.org/W2161403045","https://openalex.org/W2170726912","https://openalex.org/W2204224788","https://openalex.org/W2216827723","https://openalex.org/W2410507634","https://openalex.org/W2542459869","https://openalex.org/W2548107498","https://openalex.org/W2753094459","https://openalex.org/W2952480515","https://openalex.org/W7074186710"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W2099180796","https://openalex.org/W4293558767","https://openalex.org/W4226103311","https://openalex.org/W2476508363","https://openalex.org/W2374640358","https://openalex.org/W2550568080","https://openalex.org/W2778305812","https://openalex.org/W4319736153","https://openalex.org/W4300015639"],"abstract_inverted_index":{"MOTIVATION:":[0],"With":[1],"high-throughput":[2],"genotyping":[3,14,88,126],"systems":[4],"now":[5],"available,":[6],"it":[7,99,177],"has":[8],"become":[9],"feasible":[10],"to":[11,57,70,79,94,103,111],"fully":[12],"integrate":[13],"information":[15,24,96],"into":[16],"breeding":[17,119],"programs.":[18],"To":[19],"make":[20,71],"use":[21],"of":[22,41,68,118,185],"this":[23],"effectively":[25],"requires":[26],"DNA":[27],"extraction":[28],"facilities":[29,33],"and":[30,85,97,132,144],"marker":[31],"production":[32],"that":[34,50,151],"can":[35,178],"efficiently":[36,180],"deploy":[37],"the":[38,74,159,186],"desired":[39],"set":[40],"markers":[42],"across":[43],"samples":[44],"with":[45,182],"a":[46,65,92,168],"rapid":[47],"turnaround":[48],"time":[49,69,75],"allows":[51],"for":[52],"selection":[53,114],"before":[54],"crosses":[55],"needed":[56],"be":[58],"made.":[59],"In":[60,109],"reality,":[61],"breeders":[62],"often":[63],"have":[64],"short":[66],"window":[67],"decisions":[72,105],"by":[73,107,158],"they":[76],"are":[77,155],"able":[78],"collect":[80],"all":[81],"their":[82],"phenotyping":[83],"data":[84,127,137,152,164],"receive":[86],"corresponding":[87],"data.":[89],"This":[90],"presents":[91],"challenge":[93],"organize":[95],"utilize":[98],"in":[100,161,167,174],"downstream":[101],"analyses":[102],"support":[104],"made":[106],"breeders.":[108],"order":[110],"implement":[112],"genomic":[113],"routinely":[115],"as":[116],"part":[117,175],"programs,":[120],"one":[121],"would":[122],"need":[123],"an":[124],"efficient":[125],"storage":[128,138,146],"system.":[129,169],"We":[130,149],"selected":[131],"benchmarked":[133],"six":[134],"popular":[135],"open-source":[136],"systems,":[139],"including":[140],"relational":[141],"database":[142],"management":[143],"columnar":[145],"systems.":[147],"RESULTS:":[148],"found":[150],"extract":[153],"times":[154],"greatly":[156],"influenced":[157],"orientation":[160],"which":[162],"genotype":[163],"is":[165],"stored":[166],"HDF5":[170],"consistently":[171],"performed":[172],"best,":[173],"because":[176],"more":[179],"work":[181],"both":[183],"orientations":[184],"allele":[187],"matrix.":[188],"AVAILABILITY:":[189],"http://gobiin1.bti.cornell.edu:6083/projects/GBM/repos/benchmarking/browse.":[190]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3}],"updated_date":"2026-09-11T09:22:31.653822","created_date":"2025-10-10T00:00:00"}
