{"id":"https://openalex.org/W2963524426","doi":"https://doi.org/10.1093/database/baz088","title":"An effective biomedical data migration tool from resource description framework to JSON","display_name":"An effective biomedical data migration tool from resource description framework to JSON","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2963524426","doi":"https://doi.org/10.1093/database/baz088","mag":"2963524426","pmid":"https://pubmed.ncbi.nlm.nih.gov/31343683"},"language":"en","primary_location":{"id":"doi:10.1093/database/baz088","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz088","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz088/29001039/baz088.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz088/29001039/baz088.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100414617","display_name":"Jian Liu","orcid":"https://orcid.org/0000-0001-6601-5748"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jian Liu","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101148687","display_name":"Mo Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mo Yang","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071798264","display_name":"Lei Zhang","orcid":"https://orcid.org/0000-0003-1592-9966"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Zhang","raw_affiliation_strings":["Zhejiang University of Science and Technology, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhejiang University of Science and Technology, Hangzhou, China","institution_ids":["https://openalex.org/I168879160"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103069911","display_name":"Weijun Zhou","orcid":"https://orcid.org/0000-0002-0137-7382"},"institutions":[{"id":"https://openalex.org/I4210120929","display_name":"Zhujiang Hospital","ror":"https://ror.org/02mhxa927","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210120929"]},{"id":"https://openalex.org/I58200834","display_name":"Southern Medical University","ror":"https://ror.org/01vjw4z39","country_code":"CN","type":"education","lineage":["https://openalex.org/I58200834"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Weijun Zhou","raw_affiliation_strings":["Department of Hematology, Zhujiang Hospital, Southern Medical University, Guangzhou, China"],"raw_orcid":"https://orcid.org/0000-0002-0137-7382","affiliations":[{"raw_affiliation_string":"Department of Hematology, Zhujiang Hospital, Southern Medical University, Guangzhou, China","institution_ids":["https://openalex.org/I4210120929","https://openalex.org/I58200834"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100414617","https://openalex.org/A5103069911"],"corresponding_institution_ids":["https://openalex.org/I204983213","https://openalex.org/I4210120929","https://openalex.org/I58200834"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":2.545,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.93557954,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"2019","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9865999817848206,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9865999817848206,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10679","display_name":"Service-Oriented Architecture and Web Services","score":0.9783999919891357,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9764000177383423,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/json","display_name":"JSON","score":0.9924947023391724},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.8325703144073486},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7437122464179993},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.592164158821106},{"id":"https://openalex.org/keywords/linked-data","display_name":"Linked data","score":0.5738796591758728},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5472433567047119},{"id":"https://openalex.org/keywords/rdf-schema","display_name":"RDF Schema","score":0.48730790615081787},{"id":"https://openalex.org/keywords/simple-knowledge-organization-system","display_name":"Simple Knowledge Organization System","score":0.46469447016716003},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.41175705194473267},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.31278374791145325},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2974238991737366},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.2758675515651703},{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.17820924520492554}],"concepts":[{"id":"https://openalex.org/C2780416260","wikidata":"https://www.wikidata.org/wiki/Q2063","display_name":"JSON","level":2,"score":0.9924947023391724},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.8325703144073486},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7437122464179993},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.592164158821106},{"id":"https://openalex.org/C69075417","wikidata":"https://www.wikidata.org/wiki/Q515701","display_name":"Linked data","level":3,"score":0.5738796591758728},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5472433567047119},{"id":"https://openalex.org/C15657843","wikidata":"https://www.wikidata.org/wiki/Q1751819","display_name":"RDF Schema","level":5,"score":0.48730790615081787},{"id":"https://openalex.org/C29321653","wikidata":"https://www.wikidata.org/wiki/Q2288360","display_name":"Simple Knowledge Organization System","level":5,"score":0.46469447016716003},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.41175705194473267},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.31278374791145325},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2974238991737366},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.2758675515651703},{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.17820924520492554}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baz088","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz088","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz088/29001039/baz088.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:31343683","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31343683","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:5624716","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6657663","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baz088","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz088","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz088/29001039/baz088.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.550000011920929,"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities"}],"awards":[{"id":"https://openalex.org/G1449101145","display_name":null,"funder_award_id":"2017YFC1200205","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G1630635859","display_name":null,"funder_award_id":"2016T90294","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"},{"id":"https://openalex.org/G2633203743","display_name":null,"funder_award_id":"2018YFC1603800","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G3381575362","display_name":null,"funder_award_id":"2017YFC1200200","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3677793330","display_name":null,"funder_award_id":"61602130","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4210662038","display_name":"\u6d77\u91cf\u57fa\u56e0\u7ec4\u53d8\u5f02\u6570\u636e\u7ba1\u7406\u5173\u952e\u6280\u672f\u7814\u7a76","funder_award_id":"61872115","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4532082391","display_name":null,"funder_award_id":"2018YFC1603802","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5397948391","display_name":null,"funder_award_id":"QC2015067","funder_id":"https://openalex.org/F4320323085","funder_display_name":"Natural Science Foundation of Heilongjiang Province"},{"id":"https://openalex.org/G5490754460","display_name":null,"funder_award_id":"QC2015067","funder_id":"https://openalex.org/F4320313615","funder_display_name":"Heilongjiang Youth Development Foundation"},{"id":"https://openalex.org/G7672982789","display_name":null,"funder_award_id":"HIT.NSRIF.2017036","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G7820713342","display_name":null,"funder_award_id":"2015M581449","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"},{"id":"https://openalex.org/G8146529561","display_name":null,"funder_award_id":"2017YFC1200200","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320313615","display_name":"Heilongjiang Youth Development Foundation","ror":null},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"},{"id":"https://openalex.org/F4320323085","display_name":"Natural Science Foundation of Heilongjiang Province","ror":null},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2963524426.pdf","grobid_xml":"https://content.openalex.org/works/W2963524426.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1528439060","https://openalex.org/W1529522905","https://openalex.org/W1596295448","https://openalex.org/W1996564262","https://openalex.org/W2100203037","https://openalex.org/W2102396102","https://openalex.org/W2113310608","https://openalex.org/W2114124738","https://openalex.org/W2122732537","https://openalex.org/W2132091595","https://openalex.org/W2133739876","https://openalex.org/W2165428180","https://openalex.org/W2166752826","https://openalex.org/W2169049983","https://openalex.org/W2296944025","https://openalex.org/W2313483714","https://openalex.org/W2341844252","https://openalex.org/W2341884156","https://openalex.org/W2405137555","https://openalex.org/W2535799819","https://openalex.org/W2585969625","https://openalex.org/W2587722541","https://openalex.org/W2596104398","https://openalex.org/W2619959750","https://openalex.org/W2625159393","https://openalex.org/W2735093675","https://openalex.org/W2739999456","https://openalex.org/W2766195206","https://openalex.org/W2770747919","https://openalex.org/W2799114782","https://openalex.org/W2913556077","https://openalex.org/W2915374113","https://openalex.org/W2944186186","https://openalex.org/W2952880826","https://openalex.org/W2970173331","https://openalex.org/W4210767115"],"related_works":["https://openalex.org/W1991234668","https://openalex.org/W1485690712","https://openalex.org/W68587154","https://openalex.org/W3166547639","https://openalex.org/W1532834088","https://openalex.org/W2195608580","https://openalex.org/W2616382218","https://openalex.org/W1963763425","https://openalex.org/W199330785","https://openalex.org/W1605890909"],"abstract_inverted_index":{"Resource":[0],"Description":[1],"Framework":[2],"(RDF)":[3],"is":[4,21],"widely":[5],"used":[6],"for":[7,32,49,58,86],"representing":[8],"biomedical":[9],"data":[10,36,62,80,90,137,143],"in":[11,46,69],"practical":[12],"applications.":[13],"With":[14],"the":[15,33,40,43,60,108,114,133,140],"increases":[16],"of":[17,25,42,99,135],"RDF-based":[18],"applications,":[19],"there":[20],"an":[22,74,104,123],"emerging":[23],"requirement":[24],"novel":[26],"architectures":[27],"to":[28,84],"provide":[29],"effective":[30,75,124],"supports":[31],"future":[34,88],"RDF":[35,83,105,136],"explosion.":[37],"Inspired":[38],"by":[39],"success":[41],"new":[44],"designs":[45],"National":[47],"Center":[48],"Biotechnology":[50],"Information":[51],"dbSNP":[52],"(The":[53],"Single":[54],"Nucleotide":[55],"Polymorphism":[56],"Database)":[57],"managing":[59],"increasing":[61],"volumes":[63],"using":[64],"JSON":[65,85,109,142],"(JavaScript":[66],"Object":[67],"Notation),":[68],"this":[70,119],"paper":[71],"we":[72,121],"present":[73,113],"mapping":[76,100],"tool":[77,127],"that":[78],"allows":[79],"migrations":[81],"from":[82],"supporting":[87],"massive":[89],"explosions":[91],"and":[92,111,125,139],"releases.":[93],"We":[94],"firstly":[95],"introduce":[96],"a":[97],"set":[98],"rules,":[101],"which":[102,130],"transform":[103],"format":[106],"into":[107],"format,":[110],"then":[112],"corresponding":[115,141],"transformation":[116],"algorithm.":[117],"On":[118],"basis,":[120],"develop":[122],"user-friendly":[126],"called":[128],"RDF2JSON,":[129],"enables":[131],"automating":[132],"process":[134],"extractions":[138],"generations.":[144]},"counts_by_year":[{"year":2021,"cited_by_count":4},{"year":2019,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
