{"id":"https://openalex.org/W2964307465","doi":"https://doi.org/10.1093/database/baz077","title":"Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases","display_name":"Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2964307465","doi":"https://doi.org/10.1093/database/baz077","mag":"2964307465","pmid":"https://pubmed.ncbi.nlm.nih.gov/31328773"},"language":"en","primary_location":{"id":"doi:10.1093/database/baz077","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz077","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz077/28970812/baz077.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz077/28970812/baz077.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045265142","display_name":"Shawna Spoor","orcid":null},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shawna Spoor","raw_affiliation_strings":["Department of Horticulture, Washington State University, Pullman, WA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Horticulture, Washington State University, Pullman, WA, USA","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113727607","display_name":"Chun-Huai Cheng","orcid":null},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chun-Huai Cheng","raw_affiliation_strings":["Department of Horticulture, Washington State University, Pullman, WA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Horticulture, Washington State University, Pullman, WA, USA","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016623344","display_name":"Lacey-Anne Sanderson","orcid":"https://orcid.org/0000-0002-0149-2217"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Lacey-Anne Sanderson","raw_affiliation_strings":["Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034043439","display_name":"Bradford Condon","orcid":"https://orcid.org/0000-0003-4377-9205"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bradford Condon","raw_affiliation_strings":["Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071568297","display_name":"Abdullah Almsaeed","orcid":"https://orcid.org/0000-0002-3804-1188"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abdullah Almsaeed","raw_affiliation_strings":["Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100423262","display_name":"Ming Chen","orcid":"https://orcid.org/0000-0002-3164-8884"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ming Chen","raw_affiliation_strings":["Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003706908","display_name":"Anthony Bretaudeau","orcid":"https://orcid.org/0000-0003-0914-2470"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210141755","display_name":"Institut de G\u00e9n\u00e9tique, Environnement et Protection des Plantes","ror":"https://ror.org/038kxsm48","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2800285241","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210141755","https://openalex.org/I4399657933","https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Anthony Bretaudeau","raw_affiliation_strings":["INRA, UMR IGEPP, BIPAA/GenOuest, INRIA/Irisa - Campus de Beaulieu, Rennes Cedex, France"],"affiliations":[{"raw_affiliation_string":"INRA, UMR IGEPP, BIPAA/GenOuest, INRIA/Irisa - Campus de Beaulieu, Rennes Cedex, France","institution_ids":["https://openalex.org/I4210141755","https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040233488","display_name":"Helena Rasche","orcid":null},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Helena Rasche","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg im Breisgau, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg im Breisgau, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000749878","display_name":"Sook Jung","orcid":"https://orcid.org/0000-0003-3968-2769"},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sook Jung","raw_affiliation_strings":["Department of Horticulture, Washington State University, Pullman, WA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Horticulture, Washington State University, Pullman, WA, USA","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045435393","display_name":"Dorrie Main","orcid":"https://orcid.org/0000-0002-1162-2724"},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dorrie Main","raw_affiliation_strings":["Department of Horticulture, Washington State University, Pullman, WA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Horticulture, Washington State University, Pullman, WA, USA","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011124979","display_name":"Kirstin E. Bett","orcid":"https://orcid.org/0000-0001-7959-6959"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kirstin Bett","raw_affiliation_strings":["Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021572745","display_name":"Margaret Staton","orcid":"https://orcid.org/0000-0003-2971-9353"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Margaret Staton","raw_affiliation_strings":["Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061135911","display_name":"Jill Wegrzyn","orcid":"https://orcid.org/0000-0001-5923-0888"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jill L Wegrzyn","raw_affiliation_strings":["Computational Biology Core, Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA","Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA"],"affiliations":[{"raw_affiliation_string":"Computational Biology Core, Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA","institution_ids":["https://openalex.org/I140172145"]},{"raw_affiliation_string":"Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021360029","display_name":"F. Alex Feltus","orcid":null},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"F Alex Feltus","raw_affiliation_strings":["Dept. of Genetics and Biochemistry, Clemson University, Clemson, USA"],"affiliations":[{"raw_affiliation_string":"Dept. of Genetics and Biochemistry, Clemson University, Clemson, USA","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015114586","display_name":"Stephen Ficklin","orcid":"https://orcid.org/0000-0001-9138-6292"},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Stephen P Ficklin","raw_affiliation_strings":["Department of Horticulture, Washington State University, Pullman, WA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Horticulture, Washington State University, Pullman, WA, USA","institution_ids":["https://openalex.org/I72951846"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5015114586"],"corresponding_institution_ids":["https://openalex.org/I72951846"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":6.4437,"has_fulltext":false,"cited_by_count":32,"citation_normalized_percentile":{"value":0.96737513,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"2019","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9825000166893005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7259708642959595},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7206098437309265},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5792304873466492},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5402491092681885},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4111614525318146}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7259708642959595},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7206098437309265},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5792304873466492},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5402491092681885},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4111614525318146},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058448","descriptor_name":"Biota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058448","descriptor_name":"Biota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058448","descriptor_name":"Biota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/baz077","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz077","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz077/28970812/baz077.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:31328773","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31328773","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6643302","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6643302","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"pmh:oai:HAL:hal-02318314v1","is_oa":false,"landing_page_url":"https://hal.science/hal-02318314","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database - The journal of Biological Databases and Curation, 2019, 2019, pp.baz077. ⟨10.1093/database/baz077⟩","raw_type":"Journal articles"},{"id":"pmh:oai:freidok.uni-freiburg.de:267605","is_oa":false,"landing_page_url":"https://freidok.uni-freiburg.de/data/267605","pdf_url":null,"source":{"id":"https://openalex.org/S4306401057","display_name":"FreiDok plus (Universit\u00e4tsbibliothek Freiburg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I161046081","host_organization_name":"University of Freiburg","host_organization_lineage":["https://openalex.org/I161046081"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database. - 2019 (2019) , baz077, ISSN: 1758-0463","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/database/baz077","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz077","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz077/28970812/baz077.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5149791724","display_name":null,"funder_award_id":"8302","funder_id":"https://openalex.org/F4320310787","funder_display_name":"Genome Canada"},{"id":"https://openalex.org/G7033413450","display_name":null,"funder_award_id":"BRE060","funder_id":"https://openalex.org/F4320314113","funder_display_name":"Saskatchewan Pulse Growers"}],"funders":[{"id":"https://openalex.org/F4320309116","display_name":"Cotton Incorporated","ror":"https://ror.org/058bgdt55"},{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320313568","display_name":"Washington Tree Fruit Research Commission","ror":"https://ror.org/04mz0gg46"},{"id":"https://openalex.org/F4320314113","display_name":"Saskatchewan Pulse Growers","ror":"https://ror.org/05ff35k33"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2964307465.pdf","grobid_xml":"https://content.openalex.org/works/W2964307465.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1864021403","https://openalex.org/W1967204795","https://openalex.org/W2016676779","https://openalex.org/W2052522161","https://openalex.org/W2055961987","https://openalex.org/W2098229525","https://openalex.org/W2103017472","https://openalex.org/W2104432663","https://openalex.org/W2123171788","https://openalex.org/W2125004669","https://openalex.org/W2151397621","https://openalex.org/W2153804545","https://openalex.org/W2155983825","https://openalex.org/W2168670121","https://openalex.org/W2224343643","https://openalex.org/W2258062238","https://openalex.org/W2280109957","https://openalex.org/W2300677196","https://openalex.org/W2302501749","https://openalex.org/W2336957559","https://openalex.org/W2765384588","https://openalex.org/W2773787581","https://openalex.org/W2785580053","https://openalex.org/W2804762321","https://openalex.org/W2806816485","https://openalex.org/W2891264165","https://openalex.org/W2891678595","https://openalex.org/W2898204371","https://openalex.org/W2900255713","https://openalex.org/W2907489510","https://openalex.org/W2910442120","https://openalex.org/W4239696231","https://openalex.org/W4256726956"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"Community":[0],"biological":[1],"databases":[2],"provide":[3],"an":[4,96],"important":[5],"online":[6,47,62,104,208],"resource":[7],"for":[8,29,101,169],"both":[9,92],"public":[10],"and":[11,16,26,39,56,74,95,130,200,211,221],"private":[12],"data,":[13,44],"analysis":[14],"tools":[15,154],"community":[17,98,105],"engagement.":[18],"These":[19],"sites":[20,113],"house":[21],"genomic,":[22],"transcriptomic,":[23],"genetic,":[24],"breeding":[25],"ancillary":[27],"data":[28,69,128,131,149,158,195],"specific":[30],"species,":[31],"families":[32],"or":[33],"clades.":[34],"Due":[35],"to":[36,58,66,86,155,179,186,192],"the":[37,93,120,142,165,170,190,201],"complexity":[38],"increasing":[40],"quantities":[41],"of":[42,46,99,103,122,136],"these":[43,88],"construction":[45,102],"resources":[48],"is":[49],"increasingly":[50],"difficult":[51],"especially":[52],"with":[53,184,189],"limited":[54],"funding":[55],"access":[57],"technical":[59],"expertise.":[60],"Furthermore,":[61],"repositories":[63],"are":[64,214],"expected":[65],"promote":[67],"FAIR":[68],"principles":[70],"(findable,":[71],"accessible,":[72],"interoperable":[73],"reusable)":[75],"that":[76,126,162],"presents":[77],"additional":[78],"challenges.":[79],"The":[80],"open-source":[81],"Tripal":[82,112,123,140,178,202],"database":[83,145],"toolkit":[84],"seeks":[85],"mitigate":[87],"challenges":[89],"by":[90],"creating":[91],"software":[94],"interactive":[97],"developers":[100],"databases.":[106],"Additionally,":[107],"through":[108,133],"coordinated,":[109],"distributed":[110],"co-development,":[111],"encourage":[114],"community-wide":[115],"sustainability.":[116],"Here,":[117],"we":[118],"report":[119],"release":[121],"version":[124],"3":[125],"improves":[127],"accessibility":[129],"sharing":[132],"systematic":[134],"use":[135,177],"controlled":[137],"vocabularies":[138],"(CVs).":[139],"uses":[141],"community-developed":[143],"Chado":[144],"as":[146],"a":[147,181],"default":[148],"store,":[150],"but":[151],"now":[152],"provides":[153],"support":[156],"other":[157,194],"stores,":[159],"while":[160],"ensuring":[161],"CVs":[163],"remain":[164],"central":[166],"organizational":[167],"structure":[168],"data.":[171],"A":[172,206],"new":[173],"site":[174,183],"developer":[175],"can":[176],"develop":[180],"basic":[182],"little":[185],"no":[187],"programming,":[188],"ability":[191],"integrate":[193],"types":[196],"using":[197],"extension":[198],"modules":[199],"application":[203],"programming":[204],"interface.":[205],"thorough":[207],"User's":[209],"Guide":[210],"Developer's":[212],"Handbook":[213],"available":[215],"at":[216],"http://tripal.info,":[217],"providing":[218],"download,":[219],"installation":[220],"step-by-step":[222],"setup":[223],"instructions.":[224]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":2}],"updated_date":"2026-02-25T08:12:03.925757","created_date":"2025-10-10T00:00:00"}