{"id":"https://openalex.org/W2950796078","doi":"https://doi.org/10.1093/database/baz068","title":"Re-curation and rational enrichment of knowledge graphs in Biological Expression Language","display_name":"Re-curation and rational enrichment of knowledge graphs in Biological Expression Language","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2950796078","doi":"https://doi.org/10.1093/database/baz068","mag":"2950796078","pmid":"https://pubmed.ncbi.nlm.nih.gov/31225582"},"language":"en","primary_location":{"id":"doi:10.1093/database/baz068","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz068","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz068/28850182/baz068.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz068/28850182/baz068.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065488553","display_name":"Charles Tapley Hoyt","orcid":"https://orcid.org/0000-0003-4423-4370"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Charles Tapley Hoyt","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, Bonn, Germany","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany"],"raw_orcid":"https://orcid.org/0000-0003-4423-4370","affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043459521","display_name":"Daniel Domingo\u2010Fern\u00e1nd\u00e9z","orcid":"https://orcid.org/0000-0002-2046-6145"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniel Domingo-Fern\u00e1ndez","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, Bonn, Germany","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany"],"raw_orcid":"https://orcid.org/0000-0002-2046-6145","affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051454986","display_name":"Rana Aldisi","orcid":"https://orcid.org/0000-0002-3034-9970"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Rana Aldisi","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, Bonn, Germany","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany"],"raw_orcid":"https://orcid.org/0000-0002-3034-9970","affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018126929","display_name":"Lingling Xu","orcid":"https://orcid.org/0000-0002-0303-8616"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lingling Xu","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, Bonn, Germany","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany"],"raw_orcid":"https://orcid.org/0000-0002-0303-8616","affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062248350","display_name":"Kristian Kolpeja","orcid":"https://orcid.org/0000-0001-9661-5277"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kristian Kolpeja","raw_affiliation_strings":["Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany"],"raw_orcid":"https://orcid.org/0000-0001-9661-5277","affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005600104","display_name":"Sandra Spalek","orcid":"https://orcid.org/0000-0002-6117-4413"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sandra Spalek","raw_affiliation_strings":["Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany"],"raw_orcid":"https://orcid.org/0000-0002-6117-4413","affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072913981","display_name":"Esther Wollert","orcid":"https://orcid.org/0000-0002-7128-929X"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Esther Wollert","raw_affiliation_strings":["Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany"],"raw_orcid":"https://orcid.org/0000-0002-7128-929X","affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016902970","display_name":"John A. Bachman","orcid":"https://orcid.org/0000-0001-6095-2466"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210155419","display_name":"Center for Systems Biology","ror":"https://ror.org/05r3dyn47","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210155419","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Bachman","raw_affiliation_strings":["Laboratory of Systems Pharmacology, Harvard Medical School, 200 Longwood Ave, Boston, MA, USA"],"raw_orcid":"https://orcid.org/0000-0001-6095-2466","affiliations":[{"raw_affiliation_string":"Laboratory of Systems Pharmacology, Harvard Medical School, 200 Longwood Ave, Boston, MA, USA","institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4210155419"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022188333","display_name":"Benjamin M. Gyori","orcid":"https://orcid.org/0000-0001-9439-5346"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210155419","display_name":"Center for Systems Biology","ror":"https://ror.org/05r3dyn47","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210155419","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin M Gyori","raw_affiliation_strings":["Laboratory of Systems Pharmacology, Harvard Medical School, 200 Longwood Ave, Boston, MA, USA"],"raw_orcid":"https://orcid.org/0000-0001-9439-5346","affiliations":[{"raw_affiliation_string":"Laboratory of Systems Pharmacology, Harvard Medical School, 200 Longwood Ave, Boston, MA, USA","institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4210155419"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050422055","display_name":"Patrick Greene","orcid":"https://orcid.org/0000-0001-7052-0608"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210155419","display_name":"Center for Systems Biology","ror":"https://ror.org/05r3dyn47","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210155419","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Patrick Greene","raw_affiliation_strings":["Laboratory of Systems Pharmacology, Harvard Medical School, 200 Longwood Ave, Boston, MA, USA"],"raw_orcid":"https://orcid.org/0000-0001-7052-0608","affiliations":[{"raw_affiliation_string":"Laboratory of Systems Pharmacology, Harvard Medical School, 200 Longwood Ave, Boston, MA, USA","institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4210155419"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003139478","display_name":"Martin Hofmann\u2010Apitius","orcid":"https://orcid.org/0000-0001-9012-6720"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Hofmann-Apitius","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, Bonn, Germany","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany"],"raw_orcid":"https://orcid.org/0000-0001-9012-6720","affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology, Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5065488553"],"corresponding_institution_ids":["https://openalex.org/I135140700","https://openalex.org/I4210098248","https://openalex.org/I4210164149"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.7444,"has_fulltext":true,"cited_by_count":38,"citation_normalized_percentile":{"value":0.85154523,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"2019","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9789999723434448,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8987758159637451},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8329853415489197},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.5664729475975037},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5191049575805664},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4784640967845917},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.42544180154800415},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3978721499443054},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3269096910953522},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.25439590215682983},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.19242432713508606}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8987758159637451},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8329853415489197},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.5664729475975037},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5191049575805664},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4784640967845917},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.42544180154800415},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3978721499443054},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3269096910953522},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.25439590215682983},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.19242432713508606}],"mesh":[{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/baz068","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz068","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz068/28850182/baz068.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:31225582","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31225582","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:fraunhofer.de:N-558913","is_oa":true,"landing_page_url":"http://publica.fraunhofer.de/documents/N-558913.html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400801","display_name":"Publikationsdatenbank der Fraunhofer-Gesellschaft (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fraunhofer SCAI","raw_type":"Journal Article"},{"id":"pmh:oai:publica.fraunhofer.de:publica/259541","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/259541","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6587072","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6587072","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baz068","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz068","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz068/28850182/baz068.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8199999928474426,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G3130801505","display_name":"Aetionomy \u2013 Organising Mechanistic Knowledge about Neurodegenerative Diseases for the Improvement of Drug Development and Therapy","funder_award_id":"115568","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3829048491","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5593277320","display_name":null,"funder_award_id":"2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5702163051","display_name":null,"funder_award_id":"FP7/2007","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6002116566","display_name":null,"funder_award_id":"115568","funder_id":"https://openalex.org/F4320314178","funder_display_name":"European Federation of Pharmaceutical Industries and Associations"},{"id":"https://openalex.org/G7364720146","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320314178","funder_display_name":"European Federation of Pharmaceutical Industries and Associations"},{"id":"https://openalex.org/G8796945004","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320334960","funder_display_name":"Seventh Framework Programme"}],"funders":[{"id":"https://openalex.org/F4320314178","display_name":"European Federation of Pharmaceutical Industries and Associations","ror":"https://ror.org/00g1x4v36"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321773","display_name":"Fraunhofer-Gesellschaft","ror":"https://ror.org/05hkkdn48"},{"id":"https://openalex.org/F4320334960","display_name":"Seventh Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2950796078.pdf","grobid_xml":"https://content.openalex.org/works/W2950796078.grobid-xml"},"referenced_works_count":81,"referenced_works":["https://openalex.org/W1482386307","https://openalex.org/W1529533208","https://openalex.org/W1697889365","https://openalex.org/W1871096589","https://openalex.org/W1871852719","https://openalex.org/W1894267660","https://openalex.org/W1958105284","https://openalex.org/W1961098424","https://openalex.org/W1964880353","https://openalex.org/W1969709265","https://openalex.org/W1978715206","https://openalex.org/W1989842786","https://openalex.org/W2001758733","https://openalex.org/W2041187413","https://openalex.org/W2060871034","https://openalex.org/W2069435157","https://openalex.org/W2070042847","https://openalex.org/W2082704315","https://openalex.org/W2084641677","https://openalex.org/W2092168208","https://openalex.org/W2097903116","https://openalex.org/W2105836514","https://openalex.org/W2116238734","https://openalex.org/W2122139846","https://openalex.org/W2127589936","https://openalex.org/W2128601422","https://openalex.org/W2128763542","https://openalex.org/W2133614244","https://openalex.org/W2140611297","https://openalex.org/W2147018385","https://openalex.org/W2150420891","https://openalex.org/W2150908245","https://openalex.org/W2164298117","https://openalex.org/W2165428180","https://openalex.org/W2166602627","https://openalex.org/W2171599819","https://openalex.org/W2177317049","https://openalex.org/W2178639092","https://openalex.org/W2196234005","https://openalex.org/W2215240956","https://openalex.org/W2228907620","https://openalex.org/W2251392452","https://openalex.org/W2257876130","https://openalex.org/W2274879598","https://openalex.org/W2295176399","https://openalex.org/W2466023026","https://openalex.org/W2517051411","https://openalex.org/W2528662265","https://openalex.org/W2542446037","https://openalex.org/W2558999090","https://openalex.org/W2561675875","https://openalex.org/W2563558056","https://openalex.org/W2604808360","https://openalex.org/W2610815847","https://openalex.org/W2656695974","https://openalex.org/W2745929478","https://openalex.org/W2754782024","https://openalex.org/W2763682064","https://openalex.org/W2765869690","https://openalex.org/W2766482558","https://openalex.org/W2767683865","https://openalex.org/W2767914218","https://openalex.org/W2771692618","https://openalex.org/W2808852567","https://openalex.org/W2888304237","https://openalex.org/W2894374770","https://openalex.org/W2896830080","https://openalex.org/W2899915536","https://openalex.org/W2901332105","https://openalex.org/W2912621306","https://openalex.org/W2949333191","https://openalex.org/W2949978823","https://openalex.org/W2951651936","https://openalex.org/W2951846550","https://openalex.org/W2952755768","https://openalex.org/W2957016348","https://openalex.org/W3103899470","https://openalex.org/W3103983128","https://openalex.org/W6628808577","https://openalex.org/W6692126448","https://openalex.org/W6764249749"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W2701062589","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W4308914582","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W188202134","https://openalex.org/W4255934811"],"abstract_inverted_index":{"The":[0],"rapid":[1],"accumulation":[2],"of":[3],"new":[4],"biomedical":[5],"literature":[6,42],"not":[7],"only":[8],"causes":[9],"curated":[10],"knowledge":[11],"graphs":[12],"(KGs)":[13],"to":[14,35,43,59,88],"become":[15],"outdated":[16],"and":[17,26,39,45,63,66,108],"incomplete,":[18],"but":[19],"also":[20],"makes":[21],"manual":[22],"curation":[23],"an":[24],"impractical":[25],"unsustainable":[27],"solution.":[28],"Automated":[29],"or":[30],"semi-automated":[31],"workflows":[32,87],"are":[33],"necessary":[34],"assist":[36],"in":[37,92],"prioritizing":[38],"curating":[40],"the":[41,89,97],"update":[44],"enrich":[46],"KGs.":[47],"We":[48,84,120],"have":[49,121],"developed":[50],"two":[51],"workflows:":[52],"one":[53],"for":[54,68,78],"re-curating":[55],"a":[56],"given":[57],"KG":[58],"assure":[60],"its":[61],"syntactic":[62],"semantic":[64],"quality":[65],"another":[67],"rationally":[69],"enriching":[70],"it":[71],"by":[72,118],"manually":[73],"revising":[74],"automatically":[75],"extracted":[76],"relations":[77],"nodes":[79],"with":[80],"low":[81],"information":[82],"density.":[83],"applied":[85],"these":[86],"KGs":[90],"encoded":[91],"Biological":[93],"Expression":[94],"Language":[95],"from":[96,105],"NeuroMMSig":[98],"database":[99],"using":[100,113],"content":[101],"that":[102],"was":[103],"pre-extracted":[104],"MEDLINE":[106],"abstracts":[107],"PubMed":[109],"Central":[110],"full-text":[111],"articles":[112],"text":[114],"mining":[115],"output":[116],"integrated":[117],"INDRA.":[119],"made":[122],"this":[123],"workflow":[124],"freely":[125],"available":[126],"at":[127],"https://github.com/bel-enrichment/bel-enrichment.":[128]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
