{"id":"https://openalex.org/W2952542919","doi":"https://doi.org/10.1093/database/baz059","title":"Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases","display_name":"Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2952542919","doi":"https://doi.org/10.1093/database/baz059","mag":"2952542919","pmid":"https://pubmed.ncbi.nlm.nih.gov/31210270"},"language":"en","primary_location":{"id":"doi:10.1093/database/baz059","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz059","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz059/28789729/baz059.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz059/28789729/baz059.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Marcos Mart\u00ednez-Romero","orcid":"https://orcid.org/0000-0002-9814-3258"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Marcos Mart\u00ednez-Romero","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, 1265 Welch Road, Stanford University School of Medicine, Stanford, CA 94305-5479, USA"],"raw_orcid":"https://orcid.org/0000-0002-9814-3258","affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, 1265 Welch Road, Stanford University School of Medicine, Stanford, CA 94305-5479, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Martin J O'Connor","orcid":"https://orcid.org/0000-0002-2256-2421"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin J O'Connor","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, 1265 Welch Road, Stanford University School of Medicine, Stanford, CA 94305-5479, USA"],"raw_orcid":"https://orcid.org/0000-0002-2256-2421","affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, 1265 Welch Road, Stanford University School of Medicine, Stanford, CA 94305-5479, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Attila L Egyedi","orcid":"https://orcid.org/0000-0003-0730-5053"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Attila L Egyedi","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, 1265 Welch Road, Stanford University School of Medicine, Stanford, CA 94305-5479, USA"],"raw_orcid":"https://orcid.org/0000-0003-0730-5053","affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, 1265 Welch Road, Stanford University School of Medicine, Stanford, CA 94305-5479, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Debra Willrett","orcid":"https://orcid.org/0000-0002-3767-2957"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Debra Willrett","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, 1265 Welch Road, Stanford University School of Medicine, Stanford, CA 94305-5479, USA"],"raw_orcid":"https://orcid.org/0000-0002-3767-2957","affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, 1265 Welch Road, Stanford University School of Medicine, Stanford, CA 94305-5479, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Josef Hardi","orcid":"https://orcid.org/0000-0002-2533-6681"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Josef Hardi","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, 1265 Welch Road, Stanford University School of Medicine, Stanford, CA 94305-5479, USA"],"raw_orcid":"https://orcid.org/0000-0002-2533-6681","affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, 1265 Welch Road, Stanford University School of Medicine, Stanford, CA 94305-5479, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":null,"display_name":"John Graybeal","orcid":"https://orcid.org/0000-0001-6875-5360"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Graybeal","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, 1265 Welch Road, Stanford University School of Medicine, Stanford, CA 94305-5479, USA"],"raw_orcid":"https://orcid.org/0000-0001-6875-5360","affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, 1265 Welch Road, Stanford University School of Medicine, Stanford, CA 94305-5479, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":null,"display_name":"Mark A Musen","orcid":"https://orcid.org/0000-0003-3325-793X"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark A Musen","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, 1265 Welch Road, Stanford University School of Medicine, Stanford, CA 94305-5479, USA"],"raw_orcid":"https://orcid.org/0000-0003-3325-793X","affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, 1265 Welch Road, Stanford University School of Medicine, Stanford, CA 94305-5479, USA","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.16,"has_fulltext":false,"cited_by_count":25,"citation_normalized_percentile":{"value":0.78067382,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"2019","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6600000262260437,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6600000262260437,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.163100004196167,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.022299999371170998,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.961899995803833},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5867999792098999},{"id":"https://openalex.org/keywords/meta-data-services","display_name":"Meta Data Services","score":0.5864999890327454},{"id":"https://openalex.org/keywords/metadata-repository","display_name":"Metadata repository","score":0.585099995136261},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5548999905586243},{"id":"https://openalex.org/keywords/workbench","display_name":"Workbench","score":0.5282999873161316},{"id":"https://openalex.org/keywords/data-element","display_name":"Data element","score":0.46700000762939453},{"id":"https://openalex.org/keywords/geospatial-metadata","display_name":"Geospatial metadata","score":0.4447999894618988}],"concepts":[{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.961899995803833},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.792900025844574},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.590399980545044},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5867999792098999},{"id":"https://openalex.org/C136976847","wikidata":"https://www.wikidata.org/wiki/Q6822297","display_name":"Meta Data Services","level":4,"score":0.5864999890327454},{"id":"https://openalex.org/C153048206","wikidata":"https://www.wikidata.org/wiki/Q3454922","display_name":"Metadata repository","level":3,"score":0.585099995136261},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5548999905586243},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.554099977016449},{"id":"https://openalex.org/C2779145975","wikidata":"https://www.wikidata.org/wiki/Q347690","display_name":"Workbench","level":3,"score":0.5282999873161316},{"id":"https://openalex.org/C30872290","wikidata":"https://www.wikidata.org/wiki/Q1172389","display_name":"Data element","level":3,"score":0.46700000762939453},{"id":"https://openalex.org/C193150823","wikidata":"https://www.wikidata.org/wiki/Q1477538","display_name":"Geospatial metadata","level":5,"score":0.4447999894618988},{"id":"https://openalex.org/C193524817","wikidata":"https://www.wikidata.org/wiki/Q386780","display_name":"Association rule learning","level":2,"score":0.43230000138282776},{"id":"https://openalex.org/C65610166","wikidata":"https://www.wikidata.org/wiki/Q5227399","display_name":"Database catalog","level":4,"score":0.4000000059604645},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.33709999918937683},{"id":"https://openalex.org/C110326360","wikidata":"https://www.wikidata.org/wiki/Q17149476","display_name":"Metadata modeling","level":4,"score":0.31700000166893005},{"id":"https://openalex.org/C98143201","wikidata":"https://www.wikidata.org/wiki/Q1147639","display_name":"Data dictionary","level":3,"score":0.3050999939441681},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3003999888896942},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.29989999532699585},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.2870999872684479},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.2849000096321106},{"id":"https://openalex.org/C137314826","wikidata":"https://www.wikidata.org/wiki/Q2330408","display_name":"Data mapping","level":2,"score":0.27090001106262207},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.26910001039505005},{"id":"https://openalex.org/C2779489174","wikidata":"https://www.wikidata.org/wiki/Q6822246","display_name":"Metadata management","level":3,"score":0.25949999690055847},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.25760000944137573}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baz059","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz059","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz059/28789729/baz059.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:31210270","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31210270","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:arXiv.org:1903.09270","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1903.09270","pdf_url":"https://arxiv.org/pdf/1903.09270","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:europepmc.org:5832979","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6866600","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baz059","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz059","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz059/28789729/baz059.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2225135173","display_name":null,"funder_award_id":"U54 HG004028","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G4406141169","display_name":null,"funder_award_id":"U54HG004028","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6873799469","display_name":null,"funder_award_id":"U54 AI117925","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W102787101","https://openalex.org/W1522211256","https://openalex.org/W1578151950","https://openalex.org/W1588436445","https://openalex.org/W1957272438","https://openalex.org/W1976258225","https://openalex.org/W2008322417","https://openalex.org/W2036288429","https://openalex.org/W2045487373","https://openalex.org/W2055049468","https://openalex.org/W2066415719","https://openalex.org/W2070896531","https://openalex.org/W2100453203","https://openalex.org/W2115866740","https://openalex.org/W2120908187","https://openalex.org/W2126777664","https://openalex.org/W2130430745","https://openalex.org/W2131660156","https://openalex.org/W2132609595","https://openalex.org/W2302501749","https://openalex.org/W2548298407","https://openalex.org/W2735212780","https://openalex.org/W2763682064","https://openalex.org/W2766414528","https://openalex.org/W2785897024","https://openalex.org/W2885074900","https://openalex.org/W2950750198","https://openalex.org/W4205355130","https://openalex.org/W6604181502","https://openalex.org/W6638831029"],"related_works":[],"abstract_inverted_index":{"Metadata-the":[0],"machine-readable":[1],"descriptions":[2],"of":[3,15,41,77,82,148,167,178,245],"the":[4,12,39,53,75,98,146,206],"data-are":[5],"increasingly":[6],"seen":[7],"as":[8,201],"crucial":[9],"for":[10,95,120,225],"describing":[11],"vast":[13],"array":[14],"biomedical":[16,220],"datasets":[17],"that":[18,33,52,102,122,171,237],"are":[19,153,170],"currently":[20],"being":[21],"deposited":[22],"in":[23,145],"public":[24,28,219],"repositories.":[25],"While":[26],"most":[27],"repositories":[29,182],"have":[30],"firm":[31],"requirements":[32],"metadata":[34,43,55,99,108,121,139,179,209,216,248],"must":[35],"accompany":[36],"submitted":[37],"datasets,":[38],"quality":[40],"those":[42,189],"is":[44,51,58,91,173,240],"generally":[45],"very":[46],"poor.":[47],"A":[48],"key":[49],"problem":[50],"typical":[54],"acquisition":[56,100],"process":[57,101],"onerous":[59],"and":[60,79,110,141,186,212,229],"time":[61],"consuming,":[62],"with":[63,159,194,250,256],"little":[64],"interactive":[65],"guidance":[66],"or":[67,85],"assistance":[68],"provided":[69],"to":[70,97,106,124,134,142,156,175,242,253],"users.":[71],"Secondary":[72],"problems":[73],"include":[74],"lack":[76],"validation":[78],"sparse":[80],"use":[81,243],"standardized":[83],"terms":[84],"ontologies":[86],"when":[87,162,183,259],"authoring":[88,163,210,260],"metadata.":[89,164,261],"There":[90],"a":[92,117,202],"pressing":[93],"need":[94],"improvements":[96],"will":[103],"help":[104],"users":[105,158,255],"enter":[107],"quickly":[109],"accurately.":[111],"In":[112],"this":[113,126],"paper,":[114],"we":[115],"outline":[116],"recommendation":[118],"system":[119],"aims":[123],"address":[125],"challenge.":[127],"Our":[128],"approach":[129,200,239],"uses":[130],"association":[131,149],"rule":[132],"mining":[133],"uncover":[135],"hidden":[136],"associations":[137],"among":[138],"values":[140],"represent":[143],"them":[144,193],"form":[147],"rules.":[150],"These":[151],"rules":[152],"then":[154],"used":[155],"present":[157,254],"real-time":[160],"recommendations":[161,185,190,258],"The":[165,234],"novelties":[166],"our":[168,199,238],"method":[169],"it":[172,214],"able":[174,241],"combine":[176],"analyses":[177,244],"from":[180,217],"multiple":[181],"generating":[184],"can":[187],"enhance":[188],"by":[191],"aligning":[192],"ontology":[195],"terms.":[196],"We":[197],"implemented":[198],"service":[203],"integrated":[204],"into":[205],"CEDAR":[207],"Workbench":[208],"platform,":[211],"evaluated":[213],"using":[215],"two":[218],"repositories:":[221],"US-based":[222],"National":[223],"Center":[224],"Biotechnology":[226],"Information":[227],"BioSample":[228],"European":[230],"Bioinformatics":[231],"Institute":[232],"BioSamples.":[233],"results":[235],"show":[236],"previously":[246],"entered":[247],"coupled":[249],"ontology-based":[251],"mappings":[252],"accurate":[257]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2019-06-27T00:00:00"}
