{"id":"https://openalex.org/W2952377671","doi":"https://doi.org/10.1093/database/baz058","title":"Chickspress: a resource for chicken gene expression","display_name":"Chickspress: a resource for chicken gene expression","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2952377671","doi":"https://doi.org/10.1093/database/baz058","mag":"2952377671","pmid":"https://pubmed.ncbi.nlm.nih.gov/31210271"},"language":"en","primary_location":{"id":"doi:10.1093/database/baz058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz058","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz058/28788275/baz058.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz058/28788275/baz058.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089552380","display_name":"Fiona McCarthy","orcid":"https://orcid.org/0000-0003-2175-5464"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Fiona M McCarthy","raw_affiliation_strings":["School of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson AZ, USA"],"raw_orcid":"https://orcid.org/0000-0003-2175-5464","affiliations":[{"raw_affiliation_string":"School of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson AZ, USA","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086928200","display_name":"Ken Pendarvis","orcid":null},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ken Pendarvis","raw_affiliation_strings":["School of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson AZ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson AZ, USA","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067225644","display_name":"Amanda M. Cooksey","orcid":"https://orcid.org/0000-0003-1320-6916"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amanda M Cooksey","raw_affiliation_strings":["School of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson AZ, USA"],"raw_orcid":"https://orcid.org/0000-0003-1320-6916","affiliations":[{"raw_affiliation_string":"School of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson AZ, USA","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079581975","display_name":"Cathy Gresham","orcid":null},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cathy R Gresham","raw_affiliation_strings":["Institute of Genomics, Biocomputing & Biotechnology, Mississippi State University, Starkville MS, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Genomics, Biocomputing & Biotechnology, Mississippi State University, Starkville MS, USA","institution_ids":["https://openalex.org/I4210151352","https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112528201","display_name":"Matt Bomhoff","orcid":null},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matt Bomhoff","raw_affiliation_strings":["School of Plant Sciences, CyVerse, University of Arizona, Tucson AZ , USA"],"raw_orcid":"https://orcid.org/0000-0002-8014-9184","affiliations":[{"raw_affiliation_string":"School of Plant Sciences, CyVerse, University of Arizona, Tucson AZ , USA","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057364340","display_name":"Sean Davey","orcid":"https://orcid.org/0000-0003-3710-0278"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sean Davey","raw_affiliation_strings":["School of Plant Sciences, CyVerse, University of Arizona, Tucson AZ , USA"],"raw_orcid":"https://orcid.org/0000-0003-3710-0278","affiliations":[{"raw_affiliation_string":"School of Plant Sciences, CyVerse, University of Arizona, Tucson AZ , USA","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017848789","display_name":"Eric Lyons","orcid":"https://orcid.org/0000-0002-3348-8845"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric Lyons","raw_affiliation_strings":["School of Plant Sciences, CyVerse, University of Arizona, Tucson AZ , USA"],"raw_orcid":"https://orcid.org/0000-0002-3348-8845","affiliations":[{"raw_affiliation_string":"School of Plant Sciences, CyVerse, University of Arizona, Tucson AZ , USA","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032158473","display_name":"Tad S. Sonstegard","orcid":"https://orcid.org/0000-0002-6446-9276"},"institutions":[{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I4210125976","display_name":"Beltsville Agricultural Research Center","ror":"https://ror.org/03b08sh51","country_code":"US","type":"facility","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210125976","https://openalex.org/I4210138094"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tad S Sonstegard","raw_affiliation_strings":["United States Department of Agriculture Agricultural Research Service Beltsville Agricultural Research Center, Beltsville MD, USA"],"raw_orcid":"https://orcid.org/0000-0002-6446-9276","affiliations":[{"raw_affiliation_string":"United States Department of Agriculture Agricultural Research Service Beltsville Agricultural Research Center, Beltsville MD, USA","institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210125976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112009477","display_name":"Susan M. Bridges","orcid":null},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Susan M Bridges","raw_affiliation_strings":["Department of Computer Science and Engineering, Mississippi State University, Starkville MS, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Mississippi State University, Starkville MS, USA","institution_ids":["https://openalex.org/I99041443"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060219125","display_name":"Shane C. Burgess","orcid":"https://orcid.org/0000-0003-0076-9461"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shane C Burgess","raw_affiliation_strings":["School of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson AZ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson AZ, USA","institution_ids":["https://openalex.org/I138006243"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5089552380"],"corresponding_institution_ids":["https://openalex.org/I138006243"],"apc_list":{"value":2729,"currency":"USD","value_usd":2729},"apc_paid":{"value":2729,"currency":"USD","value_usd":2729},"fwci":1.2185,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.7873754,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"2019","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.9590073823928833},{"id":"https://openalex.org/keywords/gene-nomenclature","display_name":"Gene nomenclature","score":0.6615642309188843},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6385082006454468},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.602653443813324},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5906129479408264},{"id":"https://openalex.org/keywords/gene-prediction","display_name":"Gene prediction","score":0.5635731220245361},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.5098342299461365},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.4955202341079712},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4792644679546356},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4765763282775879},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.4561838209629059},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.43629857897758484},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.37930071353912354},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.349832683801651},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26247429847717285},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.24988031387329102}],"concepts":[{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.9590073823928833},{"id":"https://openalex.org/C62177273","wikidata":"https://www.wikidata.org/wiki/Q5531556","display_name":"Gene nomenclature","level":4,"score":0.6615642309188843},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6385082006454468},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.602653443813324},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5906129479408264},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.5635731220245361},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.5098342299461365},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.4955202341079712},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4792644679546356},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4765763282775879},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.4561838209629059},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.43629857897758484},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.37930071353912354},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.349832683801651},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26247429847717285},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.24988031387329102},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C514705636","wikidata":"https://www.wikidata.org/wiki/Q863247","display_name":"Nomenclature","level":3,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019655","descriptor_name":"Quantitative Trait, Heritable","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019655","descriptor_name":"Quantitative Trait, Heritable","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019655","descriptor_name":"Quantitative Trait, Heritable","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019655","descriptor_name":"Quantitative Trait, Heritable","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030161","descriptor_name":"Avian Proteins","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D030161","descriptor_name":"Avian Proteins","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D030161","descriptor_name":"Avian Proteins","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D030161","descriptor_name":"Avian Proteins","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D030161","descriptor_name":"Avian Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030161","descriptor_name":"Avian Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030161","descriptor_name":"Avian Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030161","descriptor_name":"Avian Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/baz058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz058","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz058/28788275/baz058.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:31210271","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31210271","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":"Journal Article"},{"id":"pmh:oai:repository.arizona.edu:10150/633624","is_oa":true,"landing_page_url":"http://hdl.handle.net/10150/633624","pdf_url":null,"source":{"id":"https://openalex.org/S4306400271","display_name":"UA Campus Repository (The University of Arizona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138006243","host_organization_name":"University of Arizona","host_organization_lineage":["https://openalex.org/I138006243"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6556980","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6556980","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"doi:10.25504/fairsharing.cflglo","is_oa":true,"landing_page_url":"https://doi.org/10.25504/fairsharing.cflglo","pdf_url":null,"source":{"id":"https://openalex.org/S7407053452","display_name":"FAIRsharing.org","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1093/database/baz058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz058","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz058/28788275/baz058.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3153070493","display_name":null,"funder_award_id":"2011-67015","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G3198655336","display_name":"Experimental annotation of the chicken genome","funder_award_id":"7r24gm079326-04","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7572980005","display_name":null,"funder_award_id":"2011-67015-30332","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"},{"id":"https://openalex.org/G8254887172","display_name":null,"funder_award_id":"R24 GM079326","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320310013","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332299","display_name":"National Institute of Food and Agriculture","ror":"https://ror.org/05qx3fv49"},{"id":"https://openalex.org/F4320332564","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2952377671.pdf","grobid_xml":"https://content.openalex.org/works/W2952377671.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1511590410","https://openalex.org/W1981849943","https://openalex.org/W1992740075","https://openalex.org/W2006884793","https://openalex.org/W2006997805","https://openalex.org/W2017450535","https://openalex.org/W2020452253","https://openalex.org/W2021653707","https://openalex.org/W2027974246","https://openalex.org/W2045560914","https://openalex.org/W2055981636","https://openalex.org/W2081465448","https://openalex.org/W2093451145","https://openalex.org/W2094953050","https://openalex.org/W2096525273","https://openalex.org/W2097065948","https://openalex.org/W2118258530","https://openalex.org/W2121253798","https://openalex.org/W2121364586","https://openalex.org/W2128386749","https://openalex.org/W2130291707","https://openalex.org/W2131271579","https://openalex.org/W2133233871","https://openalex.org/W2141458291","https://openalex.org/W2146384771","https://openalex.org/W2146749911","https://openalex.org/W2163078532","https://openalex.org/W2167406239","https://openalex.org/W2168148721","https://openalex.org/W2170551349","https://openalex.org/W2552622217","https://openalex.org/W2952377671","https://openalex.org/W4210659358","https://openalex.org/W4234797890","https://openalex.org/W4292239814","https://openalex.org/W6679077759","https://openalex.org/W6681992442"],"related_works":["https://openalex.org/W2146014453","https://openalex.org/W2464717012","https://openalex.org/W2952377671","https://openalex.org/W1814949048","https://openalex.org/W2165640100","https://openalex.org/W3011496678","https://openalex.org/W4242415927","https://openalex.org/W4313572837","https://openalex.org/W3014906505","https://openalex.org/W4244562210"],"abstract_inverted_index":{"High-throughput":[0],"sequencing":[1],"and":[2,12,36,48,94,98,108,118,165,178,197],"proteomics":[3],"technologies":[4],"are":[5,16,21,52],"markedly":[6],"increasing":[7],"the":[8,31,70,126,152],"amount":[9],"of":[10,86,135,193],"RNA":[11],"peptide":[13],"data":[14,27,41,63,107,142,149,189],"that":[15],"available":[17,25,73,140],"to":[18,139,150],"researchers,":[19],"which":[20],"typically":[22],"made":[23],"publicly":[24,72],"via":[26],"repositories":[28],"such":[29],"as":[30],"NCBI":[32,93,117],"Sequence":[33],"Read":[34],"Archive":[35],"proteome":[37],"archives,":[38],"respectively.":[39],"These":[40],"sets":[42,102,171],"contain":[43],"valuable":[44],"information":[45,56],"about":[46],"when":[47],"where":[49],"gene":[50,74,88,96,101,105,113,120,131,156,170,187],"products":[51],"expressed,":[53],"but":[54],"this":[55,208],"is":[57,82],"not":[58],"readily":[59],"obtainable":[60],"from":[61,115,133],"archived":[62],"sets.":[64],"Here":[65],"we":[66],"report":[67],"Chickspress":[68,90,148,159,183],"(http://geneatlas.arl.arizona.edu),":[69],"first":[71,127,182],"expression":[75,106,188,192],"resource":[76],"for":[77,125,143,168],"chicken":[78,87,169],"tissues.":[79],"Since":[80],"there":[81],"no":[83],"single":[84],"source":[85],"models,":[89],"incorporates":[91],"both":[92,116],"Ensembl":[95,119],"models":[97,114,132],"links":[99],"these":[100,136,144,155],"with":[103],"experimental":[104,141],"QTL":[109],"information.":[110],"By":[111],"linking":[112],"prediction":[121,137],"pipelines,":[122],"researchers":[123,205],"can,":[124],"time,":[128],"easily":[129],"compare":[130],"each":[134],"workflows":[138],"products.":[145],"We":[146,199],"use":[147,207],"show":[151],"differences":[153],"between":[154],"annotation":[157],"pipelines.":[158],"also":[160],"provides":[161],"rapid":[162],"search,":[163],"visualization":[164],"download":[166],"capacity":[167],"based":[172],"upon":[173],"tissue":[174],"type,":[175],"developmental":[176],"stage":[177],"experiment":[179],"type.":[180],"This":[181],"release":[184],"contains":[185],"161":[186],"sets,":[190],"including":[191],"mRNAs,":[194],"miRNAs,":[195],"proteins":[196],"peptides.":[198],"provide":[200],"several":[201],"examples":[202],"demonstrating":[203],"how":[204],"may":[206],"resource.":[209]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2019-06-27T00:00:00"}
