{"id":"https://openalex.org/W2947152877","doi":"https://doi.org/10.1093/database/baz051","title":"GIDB: a knowledge database for the automated curation and multidimensional analysis of molecular signatures in gastrointestinal cancer","display_name":"GIDB: a knowledge database for the automated curation and multidimensional analysis of molecular signatures in gastrointestinal cancer","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2947152877","doi":"https://doi.org/10.1093/database/baz051","mag":"2947152877","pmid":"https://pubmed.ncbi.nlm.nih.gov/31089686"},"language":"en","primary_location":{"id":"doi:10.1093/database/baz051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz051","pdf_url":"https://watermark.silverchair.com/baz051.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAr4wggK6BgkqhkiG9w0BBwagggKrMIICpwIBADCCAqAGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQM8NPv_fRQepuW2Y2tAgEQgIICcY73cj80ECT-DZTMg_vjHn9A72W1fX-eJTzW5TNPF9rWlQ-mqBHdWCr9o-bM33G5AOKlNo35KcsKQo8CL0DM_b9m9EyOvojkqdxo3tb8s7sSvWLp9-JrtM6vKsvwJQN9llTAs59YwAh_xfKYvBX5DeWPqmzg5G6y4yWygha9qKOh-b92D8CKaOuluM-g03b7bdT4vUko8OM84GAOGMY0Hbl0XW-5wIJt-3UA4nELrtX-Bfa6N4lQvXHWBwrdlT8DgBSVdqL6mEkCZ1xsItMLbRI3GT5m6f36EOx_FRUIud_lEV4UC_zbL9PdICgGwMI8_7bRF4Iz9NcaXF2mVr6DHwxItFXCdV-1PQ-guKUxDYoxuHelqRuFBE6C-FUFgWyHaCodz1yasA1P6u6OLr5U1YeGCIUTO3lBOR6VfCleVTLKiXwq3UHaM7FRY1a-WyyKi1GXFiyGG0iVskQ5_bOSKWrkhM1nuX4jvBfl0rdfpsB1mbnPVGD0p2kJ_2i_OWly2PDZrtnM0CV_pfC-ajc7sbwvKljz883zux8yZEwf8moP_3XFEQSdTrS2rN_vlbYVKgo8wqWeKFcmxXg4umF4veEcxSHy82F8j2bNKLZpDOQZzRKeWhhPKoK1H4xLDFSGmsw8PQ8sePil8COwV9Yp_csy8nNy9SBHbHYC-sCccaZeKsfZTKW1Wp24U4EKYwFyyOdRsLpviV5iBwfOW7jTjnguUKjZASBoYK5Hy3iOhxhuMdxMk8y6ssYFmt7Csj6-q9GUQyOShLEoIUvdzzOpFjciLN_HfnE7ZXkBf4V9ejkf3iM4SIGs0Ng0bXSLLu7PCYY","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://watermark.silverchair.com/baz051.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAr4wggK6BgkqhkiG9w0BBwagggKrMIICpwIBADCCAqAGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQM8NPv_fRQepuW2Y2tAgEQgIICcY73cj80ECT-DZTMg_vjHn9A72W1fX-eJTzW5TNPF9rWlQ-mqBHdWCr9o-bM33G5AOKlNo35KcsKQo8CL0DM_b9m9EyOvojkqdxo3tb8s7sSvWLp9-JrtM6vKsvwJQN9llTAs59YwAh_xfKYvBX5DeWPqmzg5G6y4yWygha9qKOh-b92D8CKaOuluM-g03b7bdT4vUko8OM84GAOGMY0Hbl0XW-5wIJt-3UA4nELrtX-Bfa6N4lQvXHWBwrdlT8DgBSVdqL6mEkCZ1xsItMLbRI3GT5m6f36EOx_FRUIud_lEV4UC_zbL9PdICgGwMI8_7bRF4Iz9NcaXF2mVr6DHwxItFXCdV-1PQ-guKUxDYoxuHelqRuFBE6C-FUFgWyHaCodz1yasA1P6u6OLr5U1YeGCIUTO3lBOR6VfCleVTLKiXwq3UHaM7FRY1a-WyyKi1GXFiyGG0iVskQ5_bOSKWrkhM1nuX4jvBfl0rdfpsB1mbnPVGD0p2kJ_2i_OWly2PDZrtnM0CV_pfC-ajc7sbwvKljz883zux8yZEwf8moP_3XFEQSdTrS2rN_vlbYVKgo8wqWeKFcmxXg4umF4veEcxSHy82F8j2bNKLZpDOQZzRKeWhhPKoK1H4xLDFSGmsw8PQ8sePil8COwV9Yp_csy8nNy9SBHbHYC-sCccaZeKsfZTKW1Wp24U4EKYwFyyOdRsLpviV5iBwfOW7jTjnguUKjZASBoYK5Hy3iOhxhuMdxMk8y6ssYFmt7Csj6-q9GUQyOShLEoIUvdzzOpFjciLN_HfnE7ZXkBf4V9ejkf3iM4SIGs0Ng0bXSLLu7PCYY","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100347070","display_name":"Ying Wang","orcid":"https://orcid.org/0000-0002-1819-294X"},"institutions":[{"id":"https://openalex.org/I177933477","display_name":"Second Military Medical University","ror":"https://ror.org/04tavpn47","country_code":"CN","type":"education","lineage":["https://openalex.org/I177933477"]},{"id":"https://openalex.org/I4210128175","display_name":"Shanghai East Hospital","ror":"https://ror.org/038xmzj21","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128175"]},{"id":"https://openalex.org/I4210137389","display_name":"Eastern Hepatobiliary Surgery Hospital","ror":"https://ror.org/043sbvg03","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210137389"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying Wang","raw_affiliation_strings":["Department of Laboratory Medicine, Shanghai Eastern Hepatobiliary Surgery Hospital, Shanghai, China","Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Laboratory Medicine, Shanghai Eastern Hepatobiliary Surgery Hospital, Shanghai, China","institution_ids":["https://openalex.org/I4210137389","https://openalex.org/I177933477"]},{"raw_affiliation_string":"Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I4210128175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072664156","display_name":"Yueqian Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I177933477","display_name":"Second Military Medical University","ror":"https://ror.org/04tavpn47","country_code":"CN","type":"education","lineage":["https://openalex.org/I177933477"]},{"id":"https://openalex.org/I4210128175","display_name":"Shanghai East Hospital","ror":"https://ror.org/038xmzj21","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128175"]},{"id":"https://openalex.org/I4210137389","display_name":"Eastern Hepatobiliary Surgery Hospital","ror":"https://ror.org/043sbvg03","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210137389"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yueqian Wang","raw_affiliation_strings":["Department of Laboratory Medicine, Shanghai Eastern Hepatobiliary Surgery Hospital, Shanghai, China","Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Laboratory Medicine, Shanghai Eastern Hepatobiliary Surgery Hospital, Shanghai, China","institution_ids":["https://openalex.org/I4210137389","https://openalex.org/I177933477"]},{"raw_affiliation_string":"Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I4210128175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037874626","display_name":"Shuangkuai Wang","orcid":"https://orcid.org/0000-0003-2060-3688"},"institutions":[{"id":"https://openalex.org/I4210128175","display_name":"Shanghai East Hospital","ror":"https://ror.org/038xmzj21","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128175"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuangkuai Wang","raw_affiliation_strings":["Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I4210128175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042205353","display_name":"Yuantao Tong","orcid":"https://orcid.org/0000-0003-4929-7450"},"institutions":[{"id":"https://openalex.org/I4210128175","display_name":"Shanghai East Hospital","ror":"https://ror.org/038xmzj21","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128175"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuantao Tong","raw_affiliation_strings":["Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I4210128175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073313773","display_name":"Ling Jin","orcid":"https://orcid.org/0000-0002-1769-3996"},"institutions":[{"id":"https://openalex.org/I4210128175","display_name":"Shanghai East Hospital","ror":"https://ror.org/038xmzj21","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128175"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ling Jin","raw_affiliation_strings":["Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I4210128175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040755577","display_name":"Hui Zong","orcid":"https://orcid.org/0000-0002-9142-5017"},"institutions":[{"id":"https://openalex.org/I4210128175","display_name":"Shanghai East Hospital","ror":"https://ror.org/038xmzj21","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128175"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hui Zong","raw_affiliation_strings":["Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I4210128175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008039836","display_name":"Rongbin Zheng","orcid":"https://orcid.org/0000-0001-9928-2463"},"institutions":[{"id":"https://openalex.org/I4210128175","display_name":"Shanghai East Hospital","ror":"https://ror.org/038xmzj21","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128175"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rongbin Zheng","raw_affiliation_strings":["Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I4210128175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102834420","display_name":"Jin-Xuan Yang","orcid":"https://orcid.org/0000-0003-2368-0515"},"institutions":[{"id":"https://openalex.org/I4210128175","display_name":"Shanghai East Hospital","ror":"https://ror.org/038xmzj21","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128175"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinxuan Yang","raw_affiliation_strings":["Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I4210128175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100358746","display_name":"Zeyu Zhang","orcid":"https://orcid.org/0000-0003-0505-3112"},"institutions":[{"id":"https://openalex.org/I4210128175","display_name":"Shanghai East Hospital","ror":"https://ror.org/038xmzj21","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128175"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zeyu Zhang","raw_affiliation_strings":["Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I4210128175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013139237","display_name":"En Ouyang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210128175","display_name":"Shanghai East Hospital","ror":"https://ror.org/038xmzj21","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128175"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"En Ouyang","raw_affiliation_strings":["Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I4210128175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102398982","display_name":"Mengyan Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I4210128175","display_name":"Shanghai East Hospital","ror":"https://ror.org/038xmzj21","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128175"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengyan Zhou","raw_affiliation_strings":["Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I4210128175"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100352068","display_name":"Xiaoyan Zhang","orcid":"https://orcid.org/0000-0002-3085-2701"},"institutions":[{"id":"https://openalex.org/I4210128175","display_name":"Shanghai East Hospital","ror":"https://ror.org/038xmzj21","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128175"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaoyan Zhang","raw_affiliation_strings":["Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Center for Translational Medicine, Shanghai East Hospital, School of Life Sciences and Technology, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I4210128175"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5100352068"],"corresponding_institution_ids":["https://openalex.org/I4210128175"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.4435,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.65746375,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"2019","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11364","display_name":"Cholangiocarcinoma and Gallbladder Cancer Studies","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11364","display_name":"Cholangiocarcinoma and Gallbladder Cancer Studies","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11369","display_name":"Genetic factors in colorectal cancer","score":0.9801999926567078,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.9747999906539917,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.49883270263671875},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.48047202825546265},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.4462003707885742},{"id":"https://openalex.org/keywords/precision-medicine","display_name":"Precision medicine","score":0.43208375573158264},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41417303681373596},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.393659770488739},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3841262757778168},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3526362180709839},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2670367360115051},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2529169023036957},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.248739093542099},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.21792972087860107},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.16318455338478088},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1161094605922699},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.11589479446411133}],"concepts":[{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.49883270263671875},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.48047202825546265},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.4462003707885742},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.43208375573158264},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41417303681373596},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.393659770488739},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3841262757778168},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3526362180709839},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2670367360115051},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2529169023036957},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.248739093542099},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.21792972087860107},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.16318455338478088},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1161094605922699},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.11589479446411133},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D005770","descriptor_name":"Gastrointestinal Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baz051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz051","pdf_url":"https://watermark.silverchair.com/baz051.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAr4wggK6BgkqhkiG9w0BBwagggKrMIICpwIBADCCAqAGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQM8NPv_fRQepuW2Y2tAgEQgIICcY73cj80ECT-DZTMg_vjHn9A72W1fX-eJTzW5TNPF9rWlQ-mqBHdWCr9o-bM33G5AOKlNo35KcsKQo8CL0DM_b9m9EyOvojkqdxo3tb8s7sSvWLp9-JrtM6vKsvwJQN9llTAs59YwAh_xfKYvBX5DeWPqmzg5G6y4yWygha9qKOh-b92D8CKaOuluM-g03b7bdT4vUko8OM84GAOGMY0Hbl0XW-5wIJt-3UA4nELrtX-Bfa6N4lQvXHWBwrdlT8DgBSVdqL6mEkCZ1xsItMLbRI3GT5m6f36EOx_FRUIud_lEV4UC_zbL9PdICgGwMI8_7bRF4Iz9NcaXF2mVr6DHwxItFXCdV-1PQ-guKUxDYoxuHelqRuFBE6C-FUFgWyHaCodz1yasA1P6u6OLr5U1YeGCIUTO3lBOR6VfCleVTLKiXwq3UHaM7FRY1a-WyyKi1GXFiyGG0iVskQ5_bOSKWrkhM1nuX4jvBfl0rdfpsB1mbnPVGD0p2kJ_2i_OWly2PDZrtnM0CV_pfC-ajc7sbwvKljz883zux8yZEwf8moP_3XFEQSdTrS2rN_vlbYVKgo8wqWeKFcmxXg4umF4veEcxSHy82F8j2bNKLZpDOQZzRKeWhhPKoK1H4xLDFSGmsw8PQ8sePil8COwV9Yp_csy8nNy9SBHbHYC-sCccaZeKsfZTKW1Wp24U4EKYwFyyOdRsLpviV5iBwfOW7jTjnguUKjZASBoYK5Hy3iOhxhuMdxMk8y6ssYFmt7Csj6-q9GUQyOShLEoIUvdzzOpFjciLN_HfnE7ZXkBf4V9ejkf3iM4SIGs0Ng0bXSLLu7PCYY","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:31089686","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31089686","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6517830","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6517830","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baz051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz051","pdf_url":"https://watermark.silverchair.com/baz051.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAr4wggK6BgkqhkiG9w0BBwagggKrMIICpwIBADCCAqAGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQM8NPv_fRQepuW2Y2tAgEQgIICcY73cj80ECT-DZTMg_vjHn9A72W1fX-eJTzW5TNPF9rWlQ-mqBHdWCr9o-bM33G5AOKlNo35KcsKQo8CL0DM_b9m9EyOvojkqdxo3tb8s7sSvWLp9-JrtM6vKsvwJQN9llTAs59YwAh_xfKYvBX5DeWPqmzg5G6y4yWygha9qKOh-b92D8CKaOuluM-g03b7bdT4vUko8OM84GAOGMY0Hbl0XW-5wIJt-3UA4nELrtX-Bfa6N4lQvXHWBwrdlT8DgBSVdqL6mEkCZ1xsItMLbRI3GT5m6f36EOx_FRUIud_lEV4UC_zbL9PdICgGwMI8_7bRF4Iz9NcaXF2mVr6DHwxItFXCdV-1PQ-guKUxDYoxuHelqRuFBE6C-FUFgWyHaCodz1yasA1P6u6OLr5U1YeGCIUTO3lBOR6VfCleVTLKiXwq3UHaM7FRY1a-WyyKi1GXFiyGG0iVskQ5_bOSKWrkhM1nuX4jvBfl0rdfpsB1mbnPVGD0p2kJ_2i_OWly2PDZrtnM0CV_pfC-ajc7sbwvKljz883zux8yZEwf8moP_3XFEQSdTrS2rN_vlbYVKgo8wqWeKFcmxXg4umF4veEcxSHy82F8j2bNKLZpDOQZzRKeWhhPKoK1H4xLDFSGmsw8PQ8sePil8COwV9Yp_csy8nNy9SBHbHYC-sCccaZeKsfZTKW1Wp24U4EKYwFyyOdRsLpviV5iBwfOW7jTjnguUKjZASBoYK5Hy3iOhxhuMdxMk8y6ssYFmt7Csj6-q9GUQyOShLEoIUvdzzOpFjciLN_HfnE7ZXkBf4V9ejkf3iM4SIGs0Ng0bXSLLu7PCYY","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.44999998807907104,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G4061517120","display_name":"\u8fd0\u7528\u6bd4\u8f83\u57fa\u56e0\u7ec4\u5b66\u57fa\u4e8e\u57fa\u56e0\u5173\u7cfb\u4f20\u9012\u6a21\u5f0f\u7814\u7a76\u57fa\u56e0\u8868\u8fbe\u8c03\u63a7\u7684\u8fdb\u5316\u673a\u5236","funder_award_id":"31100912","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4640815934","display_name":null,"funder_award_id":"2016YFC1303200","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5331904183","display_name":null,"funder_award_id":"81573023","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7374314784","display_name":null,"funder_award_id":"2019CXJQ03","funder_id":"https://openalex.org/F4320317789","funder_display_name":"Shanghai Municipal Health Commission"},{"id":"https://openalex.org/G8540364620","display_name":null,"funder_award_id":"31571363","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8771003233","display_name":null,"funder_award_id":"31601075","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320317789","display_name":"Shanghai Municipal Health Commission","ror":null},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W286875401","https://openalex.org/W1532325895","https://openalex.org/W1597406287","https://openalex.org/W1757407923","https://openalex.org/W1892546454","https://openalex.org/W1964670939","https://openalex.org/W1983963079","https://openalex.org/W1992039182","https://openalex.org/W1994567940","https://openalex.org/W2008676682","https://openalex.org/W2010595044","https://openalex.org/W2020541351","https://openalex.org/W2027210742","https://openalex.org/W2033166921","https://openalex.org/W2064821112","https://openalex.org/W2073656689","https://openalex.org/W2082668371","https://openalex.org/W2086974931","https://openalex.org/W2096525273","https://openalex.org/W2097935031","https://openalex.org/W2098201295","https://openalex.org/W2108592277","https://openalex.org/W2111808908","https://openalex.org/W2118151336","https://openalex.org/W2119412782","https://openalex.org/W2121784595","https://openalex.org/W2121906867","https://openalex.org/W2122402213","https://openalex.org/W2134163365","https://openalex.org/W2144177425","https://openalex.org/W2144211451","https://openalex.org/W2144692208","https://openalex.org/W2149441684","https://openalex.org/W2207548736","https://openalex.org/W2317582029","https://openalex.org/W2342405165","https://openalex.org/W2479105158","https://openalex.org/W2536723267","https://openalex.org/W2563886529","https://openalex.org/W2572693230","https://openalex.org/W2621488998","https://openalex.org/W2625559053","https://openalex.org/W2750294332","https://openalex.org/W4230784961","https://openalex.org/W4231041617","https://openalex.org/W6671494326","https://openalex.org/W6681383825","https://openalex.org/W6681420820","https://openalex.org/W6688096752","https://openalex.org/W6703831376"],"related_works":["https://openalex.org/W2701062589","https://openalex.org/W4308914582","https://openalex.org/W4388126069","https://openalex.org/W2567393658","https://openalex.org/W2995122411","https://openalex.org/W2736466919","https://openalex.org/W3200944274","https://openalex.org/W4200407670","https://openalex.org/W2400390830","https://openalex.org/W4399666404"],"abstract_inverted_index":{"Gastrointestinal":[0],"(GI)":[1],"cancer":[2,36,96,193],"is":[3,28,83,279],"common,":[4],"characterized":[5],"by":[6,112],"high":[7],"mortality,":[8],"and":[9,18,24,38,48,57,77,109,116,143,155,170,185,213,240,247,253,258,263,270,290],"includes":[10],"oesophagus,":[11],"gastric,":[12],"liver,":[13],"bile":[14],"duct,":[15],"pancreas,":[16],"rectal":[17],"colon":[19],"cancers.":[20],"The":[21,41],"insufficient":[22],"specificity":[23],"sensitivity":[25],"of":[26,43,62,104,135,201,216,219,274],"biomarkers":[27],"still":[29],"a":[30,101,125,176,244],"key":[31],"clinical":[32,110],"hindrance":[33],"for":[34,53,59,188,255,295],"GI":[35,91,120,192,222],"diagnosis":[37],"successful":[39],"treatment.":[40],"emergence":[42],"`precision":[44],"medicine',":[45],"`basket":[46],"trial'":[47],"`field":[49],"cancerization'":[50],"concepts":[51],"calls":[52],"an":[54,280],"urgent":[55],"need":[56],"importance":[58],"the":[60,69,75,87,133,198,207,214,267,272,292],"understanding":[61],"how":[63],"organ":[64],"system":[65],"cancers":[66],"occur":[67],"at":[68],"molecular":[70,88,107,136,203],"levels.":[71],"Knowledge":[72],"from":[73],"both":[74,153],"literature":[76,154],"data":[78,117,156,186,262],"available":[79,95],"in":[80,85,119,181,196,221,229],"public":[81],"databases":[82,97],"informative":[84],"elucidating":[86],"alterations":[89,108],"underlying":[90],"cancer.":[92,121,223],"Currently,":[93],"most":[94,208],"have":[98],"not":[99,179],"offered":[100],"comprehensive":[102,177,209],"discovery":[103],"gene-disease":[105],"associations,":[106],"information":[111,148],"integrated":[113],"text":[114],"mining":[115,118],"We":[122],"develop":[123],"GIDB,":[124],"panoptic":[126],"knowledge":[127,218],"database":[128],"that":[129,284],"attempts":[130],"to":[131,260,287],"automate":[132],"curation":[134],"signatures":[137,189],"using":[138],"natural":[139],"language":[140],"processing":[141],"approaches":[142],"multidimensional":[144],"analyses.":[145],"GIDB":[146,225,242,278],"covers":[147],"on":[149],"8730":[150],"genes":[151,169,220],"with":[152,191],"supporting":[157,183],"evidence,":[158],"248":[159],"miRNAs,":[160],"58":[161],"lncRNAs,":[162],"320":[163],"copy":[164],"number":[165],"variations,":[166],"49":[167],"fusion":[168],"2381":[171],"semantic":[172],"networks.":[173],"It":[174,205],"presents":[175],"database,":[178],"only":[180],"parallelizing":[182],"evidence":[184],"integration":[187],"associated":[190],"but":[194],"also":[195],"providing":[197],"timeline":[199],"feature":[200],"major":[202],"discoveries.":[204],"highlights":[206],"overview,":[210],"research":[211,282],"hotspots":[212],"development":[215],"historical":[217],"Furthermore,":[224],"characterizes":[226],"genomic":[227],"abnormalities":[228],"multilevel":[230],"analysis,":[231],"including":[232],"simple":[233],"somatic":[234],"mutations,":[235],"gene":[236],"expression,":[237],"DNA":[238],"methylation":[239],"prognosis.":[241],"offers":[243],"user-friendly":[245],"interface":[246],"two":[248],"customizable":[249],"online":[250],"tools":[251],"(Heatmap":[252],"Network)":[254],"experimental":[256],"researchers":[257],"clinicians":[259],"explore":[261],"help":[264],"them":[265],"shorten":[266],"learning":[268],"curve":[269],"broaden":[271],"scope":[273],"knowledge.":[275],"More":[276],"importantly,":[277],"ongoing":[281],"project":[283],"will":[285],"continue":[286],"be":[288],"updated":[289],"improve":[291],"automated":[293],"method":[294],"reducing":[296],"manual":[297],"work.":[298]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
