{"id":"https://openalex.org/W2942130491","doi":"https://doi.org/10.1093/database/baz049","title":"The MACADAM database: a MetAboliC pAthways DAtabase for Microbial taxonomic groups for mining potential metabolic capacities of archaeal and bacterial taxonomic groups","display_name":"The MACADAM database: a MetAboliC pAthways DAtabase for Microbial taxonomic groups for mining potential metabolic capacities of archaeal and bacterial taxonomic groups","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2942130491","doi":"https://doi.org/10.1093/database/baz049","mag":"2942130491","pmid":"https://pubmed.ncbi.nlm.nih.gov/31032842"},"language":"en","primary_location":{"id":"doi:10.1093/database/baz049","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz049","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz049/28539718/baz049.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz049/28539718/baz049.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051543667","display_name":"Malo Le Boulch","orcid":null},"institutions":[{"id":"https://openalex.org/I176063091","display_name":"\u00c9cole Nationale V\u00e9t\u00e9rinaire de Toulouse","ror":"https://ror.org/03m3gzv89","country_code":"FR","type":"education","lineage":["https://openalex.org/I176063091","https://openalex.org/I4210117091","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I205747304","display_name":"Institut National Polytechnique de Toulouse","ror":"https://ror.org/033p9g875","country_code":"FR","type":"education","lineage":["https://openalex.org/I205747304","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210154939","display_name":"G\u00e9n\u00e9tique Physiologie et Syst\u00e8mes d'Elevage","ror":"https://ror.org/04gg6ne93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I176063091","https://openalex.org/I205747304","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210131653","https://openalex.org/I4210154939","https://openalex.org/I4405258862","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Malo Le Boulch","raw_affiliation_strings":["GenPhySE, Universit\u00e9 de Toulouse, INRA, INPT, ENVT, Castanet Tolosan, France"],"affiliations":[{"raw_affiliation_string":"GenPhySE, Universit\u00e9 de Toulouse, INRA, INPT, ENVT, Castanet Tolosan, France","institution_ids":["https://openalex.org/I4210154939","https://openalex.org/I17866349","https://openalex.org/I205747304","https://openalex.org/I176063091"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029150281","display_name":"Patrice D\u00e9hais","orcid":null},"institutions":[{"id":"https://openalex.org/I176063091","display_name":"\u00c9cole Nationale V\u00e9t\u00e9rinaire de Toulouse","ror":"https://ror.org/03m3gzv89","country_code":"FR","type":"education","lineage":["https://openalex.org/I176063091","https://openalex.org/I4210117091","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I205747304","display_name":"Institut National Polytechnique de Toulouse","ror":"https://ror.org/033p9g875","country_code":"FR","type":"education","lineage":["https://openalex.org/I205747304","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210154939","display_name":"G\u00e9n\u00e9tique Physiologie et Syst\u00e8mes d'Elevage","ror":"https://ror.org/04gg6ne93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I176063091","https://openalex.org/I205747304","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210131653","https://openalex.org/I4210154939","https://openalex.org/I4405258862","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Patrice D\u00e9hais","raw_affiliation_strings":["Sigenae Group, GenPhySE, Universit\u00e9 de Toulouse, INRA, INPT, ENVT, Castanet Tolosan, France"],"affiliations":[{"raw_affiliation_string":"Sigenae Group, GenPhySE, Universit\u00e9 de Toulouse, INRA, INPT, ENVT, Castanet Tolosan, France","institution_ids":["https://openalex.org/I4210154939","https://openalex.org/I17866349","https://openalex.org/I205747304","https://openalex.org/I176063091"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004311311","display_name":"Sylvie Combes","orcid":"https://orcid.org/0000-0002-2945-4423"},"institutions":[{"id":"https://openalex.org/I176063091","display_name":"\u00c9cole Nationale V\u00e9t\u00e9rinaire de Toulouse","ror":"https://ror.org/03m3gzv89","country_code":"FR","type":"education","lineage":["https://openalex.org/I176063091","https://openalex.org/I4210117091","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I205747304","display_name":"Institut National Polytechnique de Toulouse","ror":"https://ror.org/033p9g875","country_code":"FR","type":"education","lineage":["https://openalex.org/I205747304","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210154939","display_name":"G\u00e9n\u00e9tique Physiologie et Syst\u00e8mes d'Elevage","ror":"https://ror.org/04gg6ne93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I176063091","https://openalex.org/I205747304","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210131653","https://openalex.org/I4210154939","https://openalex.org/I4405258862","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sylvie Combes","raw_affiliation_strings":["GenPhySE, Universit\u00e9 de Toulouse, INRA, INPT, ENVT, Castanet Tolosan, France"],"affiliations":[{"raw_affiliation_string":"GenPhySE, Universit\u00e9 de Toulouse, INRA, INPT, ENVT, Castanet Tolosan, France","institution_ids":["https://openalex.org/I4210154939","https://openalex.org/I17866349","https://openalex.org/I205747304","https://openalex.org/I176063091"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083621153","display_name":"G\u00e9raldine Pascal","orcid":"https://orcid.org/0000-0002-5250-6594"},"institutions":[{"id":"https://openalex.org/I176063091","display_name":"\u00c9cole Nationale V\u00e9t\u00e9rinaire de Toulouse","ror":"https://ror.org/03m3gzv89","country_code":"FR","type":"education","lineage":["https://openalex.org/I176063091","https://openalex.org/I4210117091","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I205747304","display_name":"Institut National Polytechnique de Toulouse","ror":"https://ror.org/033p9g875","country_code":"FR","type":"education","lineage":["https://openalex.org/I205747304","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210154939","display_name":"G\u00e9n\u00e9tique Physiologie et Syst\u00e8mes d'Elevage","ror":"https://ror.org/04gg6ne93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I176063091","https://openalex.org/I205747304","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210131653","https://openalex.org/I4210154939","https://openalex.org/I4405258862","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"G\u00e9raldine Pascal","raw_affiliation_strings":["GenPhySE, Universit\u00e9 de Toulouse, INRA, INPT, ENVT, Castanet Tolosan, France"],"affiliations":[{"raw_affiliation_string":"GenPhySE, Universit\u00e9 de Toulouse, INRA, INPT, ENVT, Castanet Tolosan, France","institution_ids":["https://openalex.org/I4210154939","https://openalex.org/I17866349","https://openalex.org/I205747304","https://openalex.org/I176063091"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5051543667"],"corresponding_institution_ids":["https://openalex.org/I176063091","https://openalex.org/I17866349","https://openalex.org/I205747304","https://openalex.org/I4210154939"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":938,"currency":"EUR","value_usd":1011},"fwci":2.4906,"has_fulltext":false,"cited_by_count":45,"citation_normalized_percentile":{"value":0.90010799,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"2019","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/refseq","display_name":"RefSeq","score":0.6929823160171509},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6265803575515747},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.6196953654289246},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6096287965774536},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5631030201911926},{"id":"https://openalex.org/keywords/phylum","display_name":"Phylum","score":0.467888742685318},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36961859464645386},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.361466646194458},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.29539209604263306},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18922170996665955},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13287955522537231}],"concepts":[{"id":"https://openalex.org/C151810110","wikidata":"https://www.wikidata.org/wiki/Q7307074","display_name":"RefSeq","level":4,"score":0.6929823160171509},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6265803575515747},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.6196953654289246},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6096287965774536},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5631030201911926},{"id":"https://openalex.org/C91066513","wikidata":"https://www.wikidata.org/wiki/Q38348","display_name":"Phylum","level":3,"score":0.467888742685318},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36961859464645386},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.361466646194458},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.29539209604263306},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18922170996665955},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13287955522537231}],"mesh":[{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/baz049","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz049","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz049/28539718/baz049.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:31032842","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31032842","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:HAL:hal-02276653v1","is_oa":true,"landing_page_url":"https://hal.science/hal-02276653","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database - The journal of Biological Databases and Curation, 2019, 2019, pp.1-14. &#x27E8;10.1093/database/baz049&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:europepmc.org:5477908","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6487390","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:prodinra.inra.fr:469576","is_oa":true,"landing_page_url":"http://prodinra.inra.fr/record/469576","pdf_url":null,"source":{"id":"https://openalex.org/S4306400794","display_name":"Prodinra (INRA Bordeaux-Aquitaine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210088668","host_organization_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","host_organization_lineage":["https://openalex.org/I4210088668"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database  (2019), 1-14. (2019)","raw_type":"ARTICLE"}],"best_oa_location":{"id":"doi:10.1093/database/baz049","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz049","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz049/28539718/baz049.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320323910","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/01x3gbx83"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2942130491.pdf","grobid_xml":"https://content.openalex.org/works/W2942130491.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1961584840","https://openalex.org/W1964572291","https://openalex.org/W1989277387","https://openalex.org/W2042160423","https://openalex.org/W2083119773","https://openalex.org/W2088226054","https://openalex.org/W2096525273","https://openalex.org/W2106280674","https://openalex.org/W2120172561","https://openalex.org/W2128601422","https://openalex.org/W2134394193","https://openalex.org/W2142678031","https://openalex.org/W2148000475","https://openalex.org/W2168465568","https://openalex.org/W2180334400","https://openalex.org/W2416704236","https://openalex.org/W2428898156","https://openalex.org/W2470052926","https://openalex.org/W2517051411","https://openalex.org/W2520355709","https://openalex.org/W2559088283","https://openalex.org/W2559133556","https://openalex.org/W2559588208","https://openalex.org/W2603346833","https://openalex.org/W2739769226","https://openalex.org/W2749464300","https://openalex.org/W2767088268","https://openalex.org/W2767683865","https://openalex.org/W2767914218","https://openalex.org/W2774551105","https://openalex.org/W2951705055","https://openalex.org/W2988775587","https://openalex.org/W4207020367","https://openalex.org/W4212865600","https://openalex.org/W4230770774","https://openalex.org/W4233573641","https://openalex.org/W4233698560","https://openalex.org/W4236875018","https://openalex.org/W4250297812"],"related_works":["https://openalex.org/W2173732482","https://openalex.org/W2167922509","https://openalex.org/W4388652965","https://openalex.org/W2107903949","https://openalex.org/W12006945","https://openalex.org/W4386739095","https://openalex.org/W1981194976","https://openalex.org/W4234194328","https://openalex.org/W2940879789","https://openalex.org/W2037714584"],"abstract_inverted_index":{"Progress":[0],"in":[1,244,257],"genome":[2,14,36,82,112],"sequencing":[3],"and":[4,103,138,153,167,187,219,237,263,280],"bioinformatics":[5],"opens":[6],"up":[7],"new":[8],"possibilities,":[9],"including":[10],"that":[11,55,93,241],"of":[12,27,110,124,128,178,197,230,254],"correlating":[13],"annotations":[15,37,164],"with":[16,38,161,214,232,268,282],"functional":[17,28,39,113,135,163,211],"information":[18,212],"such":[19],"as":[20,97,99,276],"metabolic":[21,64,95,158,265],"pathways.":[22,270],"Thanks":[23],"to":[24,34,59,203,209],"the":[25,107,111,139,170,198,207,245,252,255,259,264,269],"development":[26],"annotation":[29,114,136],"databases,":[30],"scientists":[31],"are":[32,242,261],"able":[33],"link":[35],"annotations.":[40],"We":[41],"present":[42,243],"MetAboliC":[43],"pAthways":[44],"DAtabase":[45],"for":[46,63],"Microbial":[47],"taxonomic":[48,70],"groups":[49],"(MACADAM)":[50],"here,":[51],"a":[52,67,80,120,132,176,224,228,277,291],"user-friendly":[53],"database":[54,83,145],"makes":[56],"it":[57],"possible":[58],"find":[60],"presence/absence/completeness":[61],"statistics":[62],"pathways":[65,96,231,260],"at":[66,194],"given":[68],"microbial":[69],"position.":[71],"For":[72],"each":[73],"prokaryotic":[74],"'RefSeq":[75],"complete":[76],"genome',":[77],"MACADAM":[78,116,144,174,190,222,272],"builds":[79],"pathway":[81,238],"(PGDB)":[84],"using":[85],"Pathway":[86],"Tools":[87],"software":[88],"based":[89],"on":[90],"MetaCyc":[91],"data":[92],"includes":[94],"well":[98],"associated":[100,267],"metabolites,":[101,180,215],"reactions":[102,218],"enzymes.":[104,189],"To":[105],"ensure":[106],"highest":[108],"quality":[109],"data,":[115],"also":[117,250],"contains":[118,146,175,251],"MicroCyc,":[119],"manually":[121,133],"curated":[122,134],"collection":[123],"PGDBs;":[125],"Functional":[126],"Annotation":[127],"Prokaryotic":[129],"Taxa":[130],"(FAPROTAX),":[131],"database;":[137],"IJSEM":[140,171],"phenotypic":[141,172],"database.":[142,173],"The":[143,248],"13":[147],"509":[148],"PGDBs":[149],"(13":[150],"195":[151],"bacterial":[152],"314":[154],"archaeal),":[155],"1260":[156],"unique":[157],"pathways,":[159],"completed":[160,213],"82":[162],"from":[165,169],"FAPROTAX":[166],"16":[168],"total":[177],"7921":[179],"592":[181],"enzymatic":[182,217],"reactions,":[183],"2134":[184],"EC":[185,220],"numbers":[186],"7440":[188],"can":[191,273],"be":[192,274],"queried":[193,246,281],"any":[195],"rank":[196],"NCBI":[199],"taxonomy":[200],"(from":[201],"phyla":[202],"species).":[204],"It":[205],"provides":[206],"possibility":[208],"explore":[210],"enzymes,":[216],"numbers.":[221],"returns":[223],"tabulated":[225],"file":[226,249,279],"containing":[227],"list":[229],"two":[233],"scores":[234],"(pathway":[235],"score":[236],"frequency":[239],"score)":[240],"taxa.":[247],"names":[253],"organisms":[256],"which":[258],"found":[262],"hierarchy":[266],"Finally,":[271],"downloaded":[275],"single":[278],"SQLite":[283],"or":[284,288],"python":[285],"command":[286],"lines":[287],"explored":[289],"through":[290],"web":[292],"interface.":[293]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
