{"id":"https://openalex.org/W2940599395","doi":"https://doi.org/10.1093/database/baz047","title":"rPredictorDB: a predictive database of individual secondary structures of RNAs and their formatted plots","display_name":"rPredictorDB: a predictive database of individual secondary structures of RNAs and their formatted plots","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2940599395","doi":"https://doi.org/10.1093/database/baz047","mag":"2940599395","pmid":"https://pubmed.ncbi.nlm.nih.gov/31032840"},"language":"en","primary_location":{"id":"doi:10.1093/database/baz047","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz047","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz047/28519793/baz047.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz047/28519793/baz047.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089273107","display_name":"Jan Jel\u0131\u0301nek","orcid":"https://orcid.org/0000-0001-9720-1885"},"institutions":[{"id":"https://openalex.org/I202391551","display_name":"Czech Academy of Sciences","ror":"https://ror.org/053avzc18","country_code":"CZ","type":"funder","lineage":["https://openalex.org/I202391551"]},{"id":"https://openalex.org/I21250087","display_name":"Charles University","ror":"https://ror.org/024d6js02","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21250087"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jan Jel\u00ednek","raw_affiliation_strings":["Department of Software Engineering, Faculty of Mathematics and Physics, Charles University, Ke Karlovu, Praha","Laboratory of Bioinformatics, Institute of Microbiology, The Czech Academy of Sciences, Videnska, Praha"],"affiliations":[{"raw_affiliation_string":"Department of Software Engineering, Faculty of Mathematics and Physics, Charles University, Ke Karlovu, Praha","institution_ids":["https://openalex.org/I21250087"]},{"raw_affiliation_string":"Laboratory of Bioinformatics, Institute of Microbiology, The Czech Academy of Sciences, Videnska, Praha","institution_ids":["https://openalex.org/I202391551"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049617942","display_name":"David Hoksza","orcid":"https://orcid.org/0000-0003-4679-0557"},"institutions":[{"id":"https://openalex.org/I21250087","display_name":"Charles University","ror":"https://ror.org/024d6js02","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21250087"]},{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]}],"countries":["CZ","LU"],"is_corresponding":false,"raw_author_name":"David Hoksza","raw_affiliation_strings":["Department of Software Engineering, Faculty of Mathematics and Physics, Charles University, Ke Karlovu, Praha","Luxembourg Centre for Systems Biomedicine, University of Luxembourg, avenue du Swing, Belvaux"],"affiliations":[{"raw_affiliation_string":"Department of Software Engineering, Faculty of Mathematics and Physics, Charles University, Ke Karlovu, Praha","institution_ids":["https://openalex.org/I21250087"]},{"raw_affiliation_string":"Luxembourg Centre for Systems Biomedicine, University of Luxembourg, avenue du Swing, Belvaux","institution_ids":["https://openalex.org/I186903577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102738283","display_name":"Jan Haji\u010d","orcid":"https://orcid.org/0000-0002-3503-7730"},"institutions":[{"id":"https://openalex.org/I21250087","display_name":"Charles University","ror":"https://ror.org/024d6js02","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21250087"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jan Haji\u010d","raw_affiliation_strings":["Department of Software Engineering, Faculty of Mathematics and Physics, Charles University, Ke Karlovu, Praha"],"affiliations":[{"raw_affiliation_string":"Department of Software Engineering, Faculty of Mathematics and Physics, Charles University, Ke Karlovu, Praha","institution_ids":["https://openalex.org/I21250087"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074586326","display_name":"Jan Pe\u0161ek","orcid":null},"institutions":[{"id":"https://openalex.org/I21250087","display_name":"Charles University","ror":"https://ror.org/024d6js02","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21250087"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jan Pe\u0161ek","raw_affiliation_strings":["Department of Software Engineering, Faculty of Mathematics and Physics, Charles University, Ke Karlovu, Praha"],"affiliations":[{"raw_affiliation_string":"Department of Software Engineering, Faculty of Mathematics and Physics, Charles University, Ke Karlovu, Praha","institution_ids":["https://openalex.org/I21250087"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086092370","display_name":"Jan Drozen","orcid":null},"institutions":[{"id":"https://openalex.org/I21250087","display_name":"Charles University","ror":"https://ror.org/024d6js02","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21250087"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jan Drozen","raw_affiliation_strings":["Department of Software Engineering, Faculty of Mathematics and Physics, Charles University, Ke Karlovu, Praha"],"affiliations":[{"raw_affiliation_string":"Department of Software Engineering, Faculty of Mathematics and Physics, Charles University, Ke Karlovu, Praha","institution_ids":["https://openalex.org/I21250087"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037776795","display_name":"Tom\u00e1\u0161 Hlad\u00edk","orcid":null},"institutions":[{"id":"https://openalex.org/I21250087","display_name":"Charles University","ror":"https://ror.org/024d6js02","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21250087"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Tom\u00e1\u0161 Hlad\u00edk","raw_affiliation_strings":["Department of Software Engineering, Faculty of Mathematics and Physics, Charles University, Ke Karlovu, Praha"],"affiliations":[{"raw_affiliation_string":"Department of Software Engineering, Faculty of Mathematics and Physics, Charles University, Ke Karlovu, Praha","institution_ids":["https://openalex.org/I21250087"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011106406","display_name":"Michal Klimpera","orcid":null},"institutions":[{"id":"https://openalex.org/I21250087","display_name":"Charles University","ror":"https://ror.org/024d6js02","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21250087"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Michal Klimpera","raw_affiliation_strings":["Department of Software Engineering, Faculty of Mathematics and Physics, Charles University, Ke Karlovu, Praha"],"affiliations":[{"raw_affiliation_string":"Department of Software Engineering, Faculty of Mathematics and Physics, Charles University, Ke Karlovu, Praha","institution_ids":["https://openalex.org/I21250087"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103148872","display_name":"Ji\u0159\u00ed Vohradsk\u00fd","orcid":"https://orcid.org/0000-0003-2299-2496"},"institutions":[{"id":"https://openalex.org/I202391551","display_name":"Czech Academy of Sciences","ror":"https://ror.org/053avzc18","country_code":"CZ","type":"funder","lineage":["https://openalex.org/I202391551"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Ji\u0159\u00ed Vohradsk\u00fd","raw_affiliation_strings":["Laboratory of Bioinformatics, Institute of Microbiology, The Czech Academy of Sciences, Videnska, Praha"],"affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics, Institute of Microbiology, The Czech Academy of Sciences, Videnska, Praha","institution_ids":["https://openalex.org/I202391551"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058440863","display_name":"Josef P\u00e1nek","orcid":"https://orcid.org/0000-0002-3388-3570"},"institutions":[{"id":"https://openalex.org/I202391551","display_name":"Czech Academy of Sciences","ror":"https://ror.org/053avzc18","country_code":"CZ","type":"funder","lineage":["https://openalex.org/I202391551"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Josef P\u00e1nek","raw_affiliation_strings":["Laboratory of Bioinformatics, Institute of Microbiology, The Czech Academy of Sciences, Videnska, Praha"],"affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics, Institute of Microbiology, The Czech Academy of Sciences, Videnska, Praha","institution_ids":["https://openalex.org/I202391551"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5058440863"],"corresponding_institution_ids":["https://openalex.org/I202391551"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.4295,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.61665609,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"2019","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.7636151313781738},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.6948624849319458},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6330585479736328},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.5705970525741577},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5365884900093079},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.5068402886390686},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5035080313682556},{"id":"https://openalex.org/keywords/template","display_name":"Template","score":0.4955044984817505},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4756167531013489},{"id":"https://openalex.org/keywords/ribosomal-rna","display_name":"Ribosomal RNA","score":0.46688026189804077},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.42627307772636414},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.35906141996383667},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19905292987823486},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07242804765701294}],"concepts":[{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.7636151313781738},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6948624849319458},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6330585479736328},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.5705970525741577},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5365884900093079},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.5068402886390686},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5035080313682556},{"id":"https://openalex.org/C82714645","wikidata":"https://www.wikidata.org/wiki/Q438331","display_name":"Template","level":2,"score":0.4955044984817505},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4756167531013489},{"id":"https://openalex.org/C67905577","wikidata":"https://www.wikidata.org/wiki/Q215980","display_name":"Ribosomal RNA","level":3,"score":0.46688026189804077},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.42627307772636414},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35906141996383667},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19905292987823486},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07242804765701294},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/baz047","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz047","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz047/28519793/baz047.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:31032840","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31032840","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:orbilu.uni.lu:10993/40651","is_oa":true,"landing_page_url":"https://orbilu.uni.lu/handle/10993/40651","pdf_url":"https://academic.oup.com/database/article/doi/10.1093/database/baz047/5479229","source":{"id":"https://openalex.org/S4306401815","display_name":"Open Repository and Bibliography (University of Luxembourg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I186903577","host_organization_name":"University of Luxembourg","host_organization_lineage":["https://openalex.org/I186903577"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Database: The Journal of Biological Databases and Curation, 2019 (2019)","raw_type":"peer reviewed"},{"id":"pmh:oai:pubmedcentral.nih.gov:6482342","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6482342","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"doi:10.25504/fairsharing.6mmhzp","is_oa":true,"landing_page_url":"https://doi.org/10.25504/fairsharing.6mmhzp","pdf_url":null,"source":{"id":"https://openalex.org/S7407053452","display_name":"FAIRsharing.org","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.1093/database/baz047","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz047","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz047/28519793/baz047.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.4300000071525574,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G2061811189","display_name":null,"funder_award_id":"LM2015047","funder_id":"https://openalex.org/F4320321006","funder_display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky"},{"id":"https://openalex.org/G5384873034","display_name":null,"funder_award_id":"GA15-00885S","funder_id":"https://openalex.org/F4320321006","funder_display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky"}],"funders":[{"id":"https://openalex.org/F4320321006","display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky","ror":"https://ror.org/01pv73b02"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2940599395.pdf","grobid_xml":"https://content.openalex.org/works/W2940599395.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1585306636","https://openalex.org/W1970894523","https://openalex.org/W1994958501","https://openalex.org/W1997754637","https://openalex.org/W2012960603","https://openalex.org/W2028102516","https://openalex.org/W2034285706","https://openalex.org/W2046110709","https://openalex.org/W2086561953","https://openalex.org/W2088784401","https://openalex.org/W2096049571","https://openalex.org/W2098277723","https://openalex.org/W2098553089","https://openalex.org/W2105070391","https://openalex.org/W2105113868","https://openalex.org/W2106612397","https://openalex.org/W2109219778","https://openalex.org/W2127322768","https://openalex.org/W2131802866","https://openalex.org/W2137130445","https://openalex.org/W2141152740","https://openalex.org/W2141543393","https://openalex.org/W2142056356","https://openalex.org/W2142678478","https://openalex.org/W2143407915","https://openalex.org/W2157433191","https://openalex.org/W2159965062","https://openalex.org/W2162078089","https://openalex.org/W2162224067","https://openalex.org/W2725568163","https://openalex.org/W2766848373","https://openalex.org/W2770975418","https://openalex.org/W2949401548","https://openalex.org/W2980409393","https://openalex.org/W4237362000","https://openalex.org/W6819342968"],"related_works":["https://openalex.org/W2731937419","https://openalex.org/W2045062364","https://openalex.org/W2728406523","https://openalex.org/W2017505838","https://openalex.org/W3047450301","https://openalex.org/W2558432341","https://openalex.org/W4318218930","https://openalex.org/W2057388609","https://openalex.org/W2159621058","https://openalex.org/W2412575231"],"abstract_inverted_index":{"Secondary":[0],"data":[1],"structure":[2,30,106,209,212],"of":[3,13,21,53,66,103,110,163,174,191,213],"RNA":[4,29,67,104,112],"molecules":[5],"provides":[6],"insights":[7],"into":[8],"the":[9,19,108,111,129,134,164,168,189,220],"identity":[10],"and":[11,83,132,179,196,202,208],"function":[12],"RNAs.":[14,185],"With":[15],"RNAs":[16,157,175,187],"readily":[17],"sequenced,":[18],"question":[20],"their":[22,159],"structural":[23,130],"characterization":[24],"is":[25,31,38,45],"increasingly":[26],"important.":[27],"However,":[28],"difficult":[32,59],"to":[33,72,205],"acquire.":[34],"Its":[35],"experimental":[36],"identification":[37],"extremely":[39],"technically":[40],"demanding,":[41],"while":[42],"computational":[43],"prediction":[44,102,135],"not":[46],"accurate":[47],"enough,":[48],"especially":[49],"for":[50,100,107,171],"large":[51],"structures":[52,69,80,87,95,125,166],"long":[54,177],"sequences.":[55],"We":[56],"address":[57],"this":[58],"situation":[60],"with":[61,114,119,158,176],"rPredictorDB,":[62],"a":[63,74,98],"predictive":[64],"database":[65,91],"secondary":[68,86,94,105,160,165],"that":[70],"aims":[71],"form":[73],"middle":[75],"ground":[76],"between":[77],"experimentally":[78,120],"identified":[79,124],"in":[81,88,143,188,223],"PDB":[82],"predicted":[84,96,218],"consensus":[85],"Rfam.":[89,144],"The":[90,145,186],"contains":[92],"individual":[93],"using":[97,219],"tool":[99],"template-based":[101],"homologs":[109],"families":[113],"at":[115],"least":[116],"one":[117],"homolog":[118],"solved":[121],"structure.":[122],"Experimentally":[123],"are":[126,147,193],"used":[127],"as":[128,183],"templates":[131,221],"thus":[133],"has":[136],"higher":[137],"reliability":[138],"than":[139],"de":[140],"novo":[141],"predictions":[142],"sequences":[146,178,215],"downloaded":[148,203],"from":[149],"public":[150],"resources.":[151],"So":[152],"far":[153],"rPredictorDB":[154,192],"covers":[155],"7365":[156],"structures.":[161],"Plots":[162],"use":[167],"Traveler":[169],"package":[170],"readable":[172],"display":[173],"complex":[180],"structures,":[181],"such":[182],"ribosomal":[184],"output":[190],"extensively":[194],"annotated":[195],"can":[197,216],"be":[198,217],"viewed,":[199],"browsed,":[200],"searched":[201],"according":[204],"taxonomic,":[206],"sequence":[207],"data.":[210],"Additionally,":[211],"user-provided":[214],"stored":[222],"rPredictorDB.":[224]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2019-05-03T00:00:00"}