{"id":"https://openalex.org/W2941179688","doi":"https://doi.org/10.1093/database/baz045","title":"An effective biomedical document classification scheme in support of biocuration: addressing class imbalance","display_name":"An effective biomedical document classification scheme in support of biocuration: addressing class imbalance","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2941179688","doi":"https://doi.org/10.1093/database/baz045","mag":"2941179688","pmid":"https://pubmed.ncbi.nlm.nih.gov/31032839"},"language":"en","primary_location":{"id":"doi:10.1093/database/baz045","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz045","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz045/28526358/baz045.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz045/28526358/baz045.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029696274","display_name":"Xiangying Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiangying Jiang","raw_affiliation_strings":["Department of Computer and Information Sciences, University of Delaware, Newark, DE, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070528752","display_name":"Martin Ringwald","orcid":"https://orcid.org/0000-0002-5696-5421"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin Ringwald","raw_affiliation_strings":["The Jackson Laboratory, 600 Main St., Bar Harbor, ME, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, 600 Main St., Bar Harbor, ME, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016349593","display_name":"Judith A. Blake","orcid":"https://orcid.org/0000-0001-8522-334X"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Judith A Blake","raw_affiliation_strings":["The Jackson Laboratory, 600 Main St., Bar Harbor, ME, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, 600 Main St., Bar Harbor, ME, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001355963","display_name":"Cecilia N. Arighi","orcid":"https://orcid.org/0000-0002-0803-4817"},"institutions":[{"id":"https://openalex.org/I1312106833","display_name":"Biotechnology Institute","ror":"https://ror.org/00s1jty20","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1312106833"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cecilia Arighi","raw_affiliation_strings":["Center of Bioinformatics and Computational Biology, Delaware Biotechnology Institute, Newark, DE, USA","Department of Computer and Information Sciences, University of Delaware, Newark, DE, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Bioinformatics and Computational Biology, Delaware Biotechnology Institute, Newark, DE, USA","institution_ids":["https://openalex.org/I1312106833"]},{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005232556","display_name":"Gongbo Zhang","orcid":"https://orcid.org/0009-0001-0077-3615"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gongbo Zhang","raw_affiliation_strings":["Department of Computer and Information Sciences, University of Delaware, Newark, DE, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043310715","display_name":"Hagit Shatkay","orcid":"https://orcid.org/0000-0001-6953-3970"},"institutions":[{"id":"https://openalex.org/I1312106833","display_name":"Biotechnology Institute","ror":"https://ror.org/00s1jty20","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1312106833"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hagit Shatkay","raw_affiliation_strings":["Center of Bioinformatics and Computational Biology, Delaware Biotechnology Institute, Newark, DE, USA","Department of Computer and Information Sciences, University of Delaware, Newark, DE, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Bioinformatics and Computational Biology, Delaware Biotechnology Institute, Newark, DE, USA","institution_ids":["https://openalex.org/I1312106833"]},{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5043310715"],"corresponding_institution_ids":["https://openalex.org/I1312106833","https://openalex.org/I86501945"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.9402,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.74197103,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"2019","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11652","display_name":"Imbalanced Data Classification Techniques","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11550","display_name":"Text and Document Classification Technologies","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7911549806594849},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6374181509017944},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.6248129606246948},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.5572195053100586},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5494807958602905},{"id":"https://openalex.org/keywords/classification-scheme","display_name":"Classification scheme","score":0.5353819131851196},{"id":"https://openalex.org/keywords/document-classification","display_name":"Document classification","score":0.5307801961898804},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.4920148551464081},{"id":"https://openalex.org/keywords/scheme","display_name":"Scheme (mathematics)","score":0.4892902076244354},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.4542073607444763},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37160351872444153},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3354567289352417}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7911549806594849},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6374181509017944},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.6248129606246948},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.5572195053100586},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5494807958602905},{"id":"https://openalex.org/C13460635","wikidata":"https://www.wikidata.org/wiki/Q85753676","display_name":"Classification scheme","level":2,"score":0.5353819131851196},{"id":"https://openalex.org/C2780479914","wikidata":"https://www.wikidata.org/wiki/Q302088","display_name":"Document classification","level":2,"score":0.5307801961898804},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.4920148551464081},{"id":"https://openalex.org/C77618280","wikidata":"https://www.wikidata.org/wiki/Q1155772","display_name":"Scheme (mathematics)","level":2,"score":0.4892902076244354},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.4542073607444763},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37160351872444153},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3354567289352417},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baz045","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz045","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz045/28526358/baz045.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:31032839","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31032839","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:mouseion.jax.org:stfb2019-1102","is_oa":true,"landing_page_url":"https://mouseion.jax.org/stfb2019/102","pdf_url":null,"source":{"id":"https://openalex.org/S4377196421","display_name":"The Mouseion at the JAXlibrary (Jackson Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210115256","host_organization_name":"Jackson Laboratory","host_organization_lineage":["https://openalex.org/I4210115256"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Research 2019","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6482935","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6482935","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baz045","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz045","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz045/28526358/baz045.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2877450027","display_name":null,"funder_award_id":"R01LM011945","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G3252387072","display_name":null,"funder_award_id":"P41 HD062499","funder_id":"https://openalex.org/F4320337364","funder_display_name":"National Institute of Child Health and Human Development"},{"id":"https://openalex.org/G3298807002","display_name":null,"funder_award_id":"HD062499","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4585225537","display_name":null,"funder_award_id":"R01LM012527","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G6462724340","display_name":null,"funder_award_id":"R56LM011354A","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G6716014248","display_name":null,"funder_award_id":"R56LM011354A","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7542757284","display_name":null,"funder_award_id":"R01LM011945","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8119267997","display_name":null,"funder_award_id":"R01LM012527","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337364","display_name":"National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"},{"id":"https://openalex.org/F4320337611","display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2941179688.pdf","grobid_xml":"https://content.openalex.org/works/W2941179688.grobid-xml"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W22986896","https://openalex.org/W1532325895","https://openalex.org/W1964670939","https://openalex.org/W2020278455","https://openalex.org/W2023299139","https://openalex.org/W2043566294","https://openalex.org/W2053724458","https://openalex.org/W2062707524","https://openalex.org/W2063389953","https://openalex.org/W2071810875","https://openalex.org/W2074156599","https://openalex.org/W2090559761","https://openalex.org/W2094726706","https://openalex.org/W2096601934","https://openalex.org/W2096777607","https://openalex.org/W2104544690","https://openalex.org/W2107432340","https://openalex.org/W2113769137","https://openalex.org/W2118582067","https://openalex.org/W2119697801","https://openalex.org/W2119821739","https://openalex.org/W2121780366","https://openalex.org/W2123579157","https://openalex.org/W2125848394","https://openalex.org/W2126276057","https://openalex.org/W2131904035","https://openalex.org/W2133990480","https://openalex.org/W2145224695","https://openalex.org/W2153635508","https://openalex.org/W2164330572","https://openalex.org/W2166633748","https://openalex.org/W2168866167","https://openalex.org/W2296725755","https://openalex.org/W2297432279","https://openalex.org/W2334028018","https://openalex.org/W2545753590","https://openalex.org/W2559482520","https://openalex.org/W2602583424","https://openalex.org/W2732651590","https://openalex.org/W2765384588","https://openalex.org/W2915391685","https://openalex.org/W2952894920","https://openalex.org/W4213009331","https://openalex.org/W4230856572","https://openalex.org/W4239510810","https://openalex.org/W4250877149","https://openalex.org/W4298861651","https://openalex.org/W6600942643","https://openalex.org/W6605271963","https://openalex.org/W6636191821","https://openalex.org/W6640462745","https://openalex.org/W6669296993","https://openalex.org/W6679539681","https://openalex.org/W6685079732"],"related_works":["https://openalex.org/W855278477","https://openalex.org/W2409268345","https://openalex.org/W2370299578","https://openalex.org/W1581172184","https://openalex.org/W2411463128","https://openalex.org/W4313035775","https://openalex.org/W2900292107","https://openalex.org/W1995014490","https://openalex.org/W3126735012","https://openalex.org/W2741401452"],"abstract_inverted_index":{"Published":[0],"literature":[1],"is":[2,85,127],"an":[3,23,94],"important":[4,24],"source":[5],"of":[6,17,46,69,77,106,149,174,181,224],"knowledge":[7],"supporting":[8],"biomedical":[9,27,30,47,59,107],"research.":[10,28],"Given":[11],"the":[12,40,118,147,164,194,222],"large":[13,104,154,218],"and":[14,55,140,205],"increasing":[15],"number":[16],"publications,":[18],"automated":[19],"document":[20,31,60],"classification":[21,61,96,212],"plays":[22],"role":[25],"in":[26,38,53,122,221],"Effective":[29],"classifiers":[32],"are":[33,120,187,196],"especially":[34],"needed":[35],"for":[36,98],"bio-databases,":[37],"which":[39,117,182],"information":[41,111],"stems":[42],"from":[43],"many":[44],"thousands":[45],"publications":[48,71,108],"that":[49,109,158,209],"curators":[50,119],"must":[51],"read":[52],"detail":[54],"annotate.":[56],"In":[57],"addition,":[58],"often":[62],"amounts":[63],"to":[64,87,113,191],"identifying":[65,100],"a":[66,73,88,103,114,130,153,217],"small":[67],"subset":[68],"relevant":[70,112,190],"within":[72],"much":[74],"larger":[75],"collection":[76],"available":[78],"documents.":[79],"As":[80],"such,":[81],"addressing":[82],"class":[83],"imbalance":[84],"essential":[86],"practical":[89],"classifier.":[90],"We":[91,145],"present":[92],"here":[93],"effective":[95],"scheme":[97,126,213],"automatically":[99],"papers":[101],"among":[102],"pool":[105],"contain":[110],"specific":[115],"topic,":[116],"interested":[121],"annotating.":[123],"The":[124,171],"proposed":[125,211],"based":[128],"on":[129],"meta-classification":[131],"framework":[132],"using":[133],"cluster-based":[134],"under-sampling":[135],"combined":[136],"with":[137],"named-entity":[138],"recognition":[139],"statistical":[141],"feature":[142],"selection":[143],"strategies.":[144],"examined":[146],"performance":[148],"our":[150,210],"method":[151],"over":[152],"imbalanced":[155],"data":[156,219,225],"set":[157,172,220],"was":[159],"originally":[160],"manually":[161],"curated":[162],"by":[163],"Jackson":[165],"Laboratory's":[166],"Gene":[167],"Expression":[168],"Database":[169],"(GXD).":[170],"consists":[173],"more":[175],"than":[176],"90":[177],"000":[178,185],"PubMed":[179],"abstracts,":[180],"about":[183],"13":[184],"documents":[186],"labeled":[188],"as":[189],"GXD":[192],"while":[193],"others":[195],"not":[197],"relevant.":[198],"Our":[199],"results,":[200],"0.72":[201],"precision,":[202],"0.80":[203],"recall":[204],"0.75":[206],"f-measure,":[207],"demonstrate":[208],"effectively":[214],"categorizes":[215],"such":[216],"face":[223],"imbalance.":[226]},"counts_by_year":[{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":2}],"updated_date":"2026-05-03T08:25:01.440150","created_date":"2025-10-10T00:00:00"}