{"id":"https://openalex.org/W2950250031","doi":"https://doi.org/10.1093/database/baz016","title":"Increased interactivity and improvements to the <i>GigaScience</i> database, GigaDB","display_name":"Increased interactivity and improvements to the <i>GigaScience</i> database, GigaDB","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2950250031","doi":"https://doi.org/10.1093/database/baz016","mag":"2950250031","pmid":"https://pubmed.ncbi.nlm.nih.gov/30753480"},"language":"en","primary_location":{"id":"doi:10.1093/database/baz016","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz016","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz016/27781275/baz016.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz016/27781275/baz016.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Si Zhe Xiao","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Si Zhe Xiao","raw_affiliation_strings":["BGI-Hong Kong, GigaScience"],"affiliations":[{"raw_affiliation_string":"BGI-Hong Kong, GigaScience","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043488880","display_name":"Chris Armit","orcid":"https://orcid.org/0000-0002-9952-8141"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chris Armit","raw_affiliation_strings":["BGI-Hong Kong, GigaScience"],"affiliations":[{"raw_affiliation_string":"BGI-Hong Kong, GigaScience","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091565842","display_name":"Scott Edmunds","orcid":"https://orcid.org/0000-0001-6444-1436"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Scott Edmunds","raw_affiliation_strings":["BGI-Hong Kong, GigaScience"],"affiliations":[{"raw_affiliation_string":"BGI-Hong Kong, GigaScience","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010268074","display_name":"Laurie Goodman","orcid":"https://orcid.org/0000-0001-9724-5976"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Laurie Goodman","raw_affiliation_strings":["BGI-Hong Kong, GigaScience"],"affiliations":[{"raw_affiliation_string":"BGI-Hong Kong, GigaScience","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064435741","display_name":"Peter Li","orcid":"https://orcid.org/0000-0001-9602-9550"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Peter Li","raw_affiliation_strings":["BGI-Hong Kong, GigaScience"],"affiliations":[{"raw_affiliation_string":"BGI-Hong Kong, GigaScience","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026096278","display_name":"Mary Ann Tuli","orcid":"https://orcid.org/0000-0002-4667-9528"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mary Ann Tuli","raw_affiliation_strings":["BGI-Hong Kong, GigaScience"],"affiliations":[{"raw_affiliation_string":"BGI-Hong Kong, GigaScience","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009068138","display_name":"Chris Hunter","orcid":"https://orcid.org/0000-0002-1335-0881"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Christopher Ian Hunter","raw_affiliation_strings":["BGI-Hong Kong, GigaScience"],"affiliations":[{"raw_affiliation_string":"BGI-Hong Kong, GigaScience","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5009068138"],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":4.4099,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.95823289,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"2019","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9860000014305115,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9825999736785889,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interactivity","display_name":"Interactivity","score":0.8864271640777588},{"id":"https://openalex.org/keywords/codebase","display_name":"Codebase","score":0.8507290482521057},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7420639395713806},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.5444995760917664},{"id":"https://openalex.org/keywords/volume","display_name":"Volume (thermodynamics)","score":0.5018937587738037},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.47081905603408813},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.35119545459747314},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.16664081811904907},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.12232565879821777}],"concepts":[{"id":"https://openalex.org/C144430266","wikidata":"https://www.wikidata.org/wiki/Q839721","display_name":"Interactivity","level":2,"score":0.8864271640777588},{"id":"https://openalex.org/C51929080","wikidata":"https://www.wikidata.org/wiki/Q2425187","display_name":"Codebase","level":3,"score":0.8507290482521057},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7420639395713806},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.5444995760917664},{"id":"https://openalex.org/C20556612","wikidata":"https://www.wikidata.org/wiki/Q4469374","display_name":"Volume (thermodynamics)","level":2,"score":0.5018937587738037},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.47081905603408813},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.35119545459747314},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.16664081811904907},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.12232565879821777},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baz016","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz016","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz016/27781275/baz016.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:30753480","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30753480","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:5368704","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6376146","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baz016","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baz016","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baz016/27781275/baz016.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.47999998927116394,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2950250031.pdf","grobid_xml":"https://content.openalex.org/works/W2950250031.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1991056282","https://openalex.org/W2054496673","https://openalex.org/W2097124003","https://openalex.org/W2135667536","https://openalex.org/W2406164431","https://openalex.org/W2785725776","https://openalex.org/W2792716363","https://openalex.org/W2934450419","https://openalex.org/W3104081400","https://openalex.org/W6894264354"],"related_works":["https://openalex.org/W2319020389","https://openalex.org/W2001821990","https://openalex.org/W2272707781","https://openalex.org/W2747851897","https://openalex.org/W1975913006","https://openalex.org/W4240086805","https://openalex.org/W1513662110","https://openalex.org/W2063506784","https://openalex.org/W2013411520","https://openalex.org/W2521348551"],"abstract_inverted_index":{"With":[0],"a":[1],"large":[2],"increase":[3],"in":[4,12,19],"the":[5,24,31,67,71,75,78,90,100,105,114],"volume":[6],"and":[7,26,39,49,52,85,96,102],"type":[8],"of":[9,66,74,82,104],"data":[10],"archived":[11],"GigaScience":[13],"Database":[14],"(GigaDB)":[15],"since":[16],"its":[17],"launch":[18],"2011,":[20],"we":[21,62,108],"have":[22],"studied":[23],"metrics":[25,81],"user":[27,57],"patterns":[28],"to":[29,35,45,98],"assess":[30],"important":[32],"aspects":[33],"needed":[34],"best":[36],"suit":[37],"current":[38,68],"future":[40,111],"use.":[41],"This":[42],"has":[43,93],"led":[44],"new":[46],"front-end":[47],"developments":[48],"enhanced":[50,97],"interactivity":[51],"functionality":[53,103],"that":[54],"greatly":[55],"improve":[56,99],"experience.":[58],"In":[59],"this":[60],"article,":[61],"present":[63],"an":[64,86],"overview":[65],"practices":[69],"including":[70],"Biocurational":[72],"role":[73],"GigaDB":[76,83,91,115],"staff,":[77],"broad":[79],"usage":[80],"datasets":[84],"update":[87],"on":[88,110],"how":[89],"platform":[92],"been":[94],"overhauled":[95],"stability":[101],"codebase.":[106],"Finally,":[107],"report":[109],"directions":[112],"for":[113],"resource.":[116]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":3}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2019-06-27T00:00:00"}
