{"id":"https://openalex.org/W2914462559","doi":"https://doi.org/10.1093/database/bay129","title":"Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt","display_name":"Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2914462559","doi":"https://doi.org/10.1093/database/bay129","mag":"2914462559","pmid":"https://pubmed.ncbi.nlm.nih.gov/30576492"},"language":"en","primary_location":{"id":"doi:10.1093/database/bay129","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay129","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay129/27329435/bay129.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay129/27329435/bay129.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075849993","display_name":"Aurore Britan","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Aurore Britan","raw_affiliation_strings":["Computer and Laboratory Investigation of Proteins of Human Origin Group, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Laboratory Investigation of Proteins of Human Origin Group, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050374215","display_name":"Isabelle Cusin","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Isabelle Cusin","raw_affiliation_strings":["Computer and Laboratory Investigation of Proteins of Human Origin Group, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Laboratory Investigation of Proteins of Human Origin Group, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088175951","display_name":"Val\u00e9rie Hinard","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Val\u00e9rie Hinard","raw_affiliation_strings":["Computer and Laboratory Investigation of Proteins of Human Origin Group, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Laboratory Investigation of Proteins of Human Origin Group, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049986775","display_name":"Luc Mottin","orcid":"https://orcid.org/0000-0002-9614-9293"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I4210088449","display_name":"HES-SO Gen\u00e8ve","ror":"https://ror.org/007gfwn20","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891","https://openalex.org/I4210088449"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Luc Mottin","raw_affiliation_strings":["Haute \u00e9cole sp\u00e9cialis\u00e9e de Suisse occidentale, Haute Ecole de Gestion de Gen\u00e8ve, Carouge, Switzerland","SIB Text Mining, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-9614-9293","affiliations":[{"raw_affiliation_string":"Haute \u00e9cole sp\u00e9cialis\u00e9e de Suisse occidentale, Haute Ecole de Gestion de Gen\u00e8ve, Carouge, Switzerland","institution_ids":["https://openalex.org/I4210088449"]},{"raw_affiliation_string":"SIB Text Mining, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017034341","display_name":"Emilie Pasche","orcid":"https://orcid.org/0000-0002-9118-5762"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I4210088449","display_name":"HES-SO Gen\u00e8ve","ror":"https://ror.org/007gfwn20","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891","https://openalex.org/I4210088449"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Emilie Pasche","raw_affiliation_strings":["Haute \u00e9cole sp\u00e9cialis\u00e9e de Suisse occidentale, Haute Ecole de Gestion de Gen\u00e8ve, Carouge, Switzerland","SIB Text Mining, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Haute \u00e9cole sp\u00e9cialis\u00e9e de Suisse occidentale, Haute Ecole de Gestion de Gen\u00e8ve, Carouge, Switzerland","institution_ids":["https://openalex.org/I4210088449"]},{"raw_affiliation_string":"SIB Text Mining, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091440467","display_name":"Julien Gobeill","orcid":"https://orcid.org/0000-0001-9809-7741"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I4210088449","display_name":"HES-SO Gen\u00e8ve","ror":"https://ror.org/007gfwn20","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891","https://openalex.org/I4210088449"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Julien Gobeill","raw_affiliation_strings":["Haute \u00e9cole sp\u00e9cialis\u00e9e de Suisse occidentale, Haute Ecole de Gestion de Gen\u00e8ve, Carouge, Switzerland","SIB Text Mining, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Haute \u00e9cole sp\u00e9cialis\u00e9e de Suisse occidentale, Haute Ecole de Gestion de Gen\u00e8ve, Carouge, Switzerland","institution_ids":["https://openalex.org/I4210088449"]},{"raw_affiliation_string":"SIB Text Mining, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091766854","display_name":"Valentine Rech de Laval","orcid":"https://orcid.org/0000-0002-3020-1490"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Valentine Rech de Laval","raw_affiliation_strings":["Computer and Laboratory Investigation of Proteins of Human Origin Group, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Laboratory Investigation of Proteins of Human Origin Group, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055843264","display_name":"Anne Gleizes","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Anne Gleizes","raw_affiliation_strings":["Computer and Laboratory Investigation of Proteins of Human Origin Group, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Laboratory Investigation of Proteins of Human Origin Group, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102955015","display_name":"Daniel Teixeira","orcid":"https://orcid.org/0000-0003-2110-4725"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Daniel Teixeira","raw_affiliation_strings":["Computer and Laboratory Investigation of Proteins of Human Origin Group, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Laboratory Investigation of Proteins of Human Origin Group, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086411804","display_name":"Pierre-Andr\u00e9 Michel","orcid":"https://orcid.org/0000-0002-7023-1045"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Pierre-Andr\u00e9 Michel","raw_affiliation_strings":["Computer and Laboratory Investigation of Proteins of Human Origin Group, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Laboratory Investigation of Proteins of Human Origin Group, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042384742","display_name":"Patrick Ruch","orcid":"https://orcid.org/0000-0002-3374-2962"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I4210088449","display_name":"HES-SO Gen\u00e8ve","ror":"https://ror.org/007gfwn20","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891","https://openalex.org/I4210088449"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Patrick Ruch","raw_affiliation_strings":["Haute \u00e9cole sp\u00e9cialis\u00e9e de Suisse occidentale, Haute Ecole de Gestion de Gen\u00e8ve, Carouge, Switzerland","SIB Text Mining, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Haute \u00e9cole sp\u00e9cialis\u00e9e de Suisse occidentale, Haute Ecole de Gestion de Gen\u00e8ve, Carouge, Switzerland","institution_ids":["https://openalex.org/I4210088449"]},{"raw_affiliation_string":"SIB Text Mining, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014365246","display_name":"Pascale Gaudet","orcid":"https://orcid.org/0000-0003-1813-6857"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Pascale Gaudet","raw_affiliation_strings":["Computer and Laboratory Investigation of Proteins of Human Origin Group, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Laboratory Investigation of Proteins of Human Origin Group, SIB Swiss Institute of Bioinformatics, Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5014365246","https://openalex.org/A5042384742"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I4210088449"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.4638,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.64586349,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"2018","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9843000173568726,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.8506820797920227},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7847588062286377},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7577022314071655},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.7127276062965393},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6860815286636353},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6145435571670532},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.6030066609382629},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4561038613319397},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.4256702661514282},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.42011791467666626},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3232879042625427},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.26552098989486694},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13261345028877258},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.09742483496665955}],"concepts":[{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.8506820797920227},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7847588062286377},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7577022314071655},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.7127276062965393},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6860815286636353},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6145435571670532},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.6030066609382629},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4561038613319397},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.4256702661514282},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.42011791467666626},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3232879042625427},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.26552098989486694},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13261345028877258},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.09742483496665955},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bay129","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay129","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay129/27329435/bay129.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:30576492","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30576492","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:5276510","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6301339","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bay129","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay129","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay129/27329435/bay129.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2914462559.pdf"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W183866246","https://openalex.org/W1582394872","https://openalex.org/W1649793500","https://openalex.org/W1964670939","https://openalex.org/W1964985092","https://openalex.org/W1986657538","https://openalex.org/W2014182449","https://openalex.org/W2033735518","https://openalex.org/W2089712681","https://openalex.org/W2094726706","https://openalex.org/W2096525273","https://openalex.org/W2096537696","https://openalex.org/W2103017472","https://openalex.org/W2112227057","https://openalex.org/W2115382934","https://openalex.org/W2123808048","https://openalex.org/W2129522786","https://openalex.org/W2132784310","https://openalex.org/W2141773193","https://openalex.org/W2148130205","https://openalex.org/W2154139219","https://openalex.org/W2162965868","https://openalex.org/W2165612380","https://openalex.org/W2168644196","https://openalex.org/W2205636404","https://openalex.org/W2275721306","https://openalex.org/W2402320467","https://openalex.org/W2414319702","https://openalex.org/W2418383179","https://openalex.org/W2470124677","https://openalex.org/W2516150684","https://openalex.org/W2547366414","https://openalex.org/W2558841060","https://openalex.org/W2560310361","https://openalex.org/W2562810405","https://openalex.org/W2591418495","https://openalex.org/W2594625441","https://openalex.org/W2595875793","https://openalex.org/W2604808360","https://openalex.org/W2732651590","https://openalex.org/W2753488187","https://openalex.org/W2789889445","https://openalex.org/W2887377515","https://openalex.org/W2964023798","https://openalex.org/W2969719845","https://openalex.org/W4210702584","https://openalex.org/W4243601081","https://openalex.org/W4245751824","https://openalex.org/W6636842197","https://openalex.org/W6754501005"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W2169425537","https://openalex.org/W2295917292"],"abstract_inverted_index":{"The":[0,109,225],"development":[1],"of":[2,71,81,95,115,121,124,136,147,152,171,183,189,204,219,241,267],"efficient":[3],"text-mining":[4],"tools":[5],"promises":[6],"to":[7,18,85,117,213],"boost":[8],"the":[9,15,20,56,69,79,93,102,106,113,119,134,137,143,148,184,187,190,205,220,233,238,247,280,284],"curation":[10,29,51,58,120],"workflow":[11],"by":[12,73,155,223],"significantly":[13],"reducing":[14],"time":[16],"needed":[17],"process":[19],"literature":[21],"into":[22,45,251],"biological":[23,126],"databases.":[24],"We":[25,76,132],"have":[26],"developed":[27],"a":[28,35,46,87,260,288],"support":[30,118],"tool,":[31],"neXtA5,":[32,96],"that":[33,159,276],"provides":[34],"search":[36],"engine":[37],"coupled":[38],"with":[39,52,105,163,291],"an":[40,180,252],"annotation":[41,253],"system":[42,192,286],"directly":[43],"integrated":[44],"biocuration":[47],"workflow.":[48],"neXtA5":[49,72,103,116,156,164,206,209,242],"assists":[50],"modules":[53],"optimized":[54],"for":[55,89,165,235],"thevarious":[57],"tasks:":[59],"document":[60,153],"triage,":[61],"entity":[62],"recognition":[63],"and":[64,100,129,145,168,201,216,270],"information":[65,248],"extraction.Here,":[66],"we":[67,97,245],"describe":[68],"evaluation":[70,151],"expert":[74,292],"curators.":[75,224],"first":[77,265,281],"assessed":[78],"annotations":[80],"two":[82,122],"independent":[83],"curators":[84,161,174,197],"provide":[86],"baseline":[88],"comparison.":[90],"To":[91],"evaluate":[92],"performance":[94],"submitted":[98],"requests":[99],"compared":[101],"results":[104,258,274],"manual":[107],"curation.":[108],"analysis":[110],"focuses":[111],"on":[112,176],"usability":[114],"types":[123],"data:":[125],"processes":[127],"(BPs)":[128],"diseases":[130],"(Ds).":[131],"evaluated":[133],"relevance":[135],"papers":[138],"proposed":[139],"as":[140,142],"well":[141],"recall":[144],"precision":[146,157,188,262,289],"suggested":[149],"annotations.The":[150],"triage":[154,191],"showed":[158],"both":[160],"agree":[162,175],"67":[166],"(BP)":[167,200,215],"63%":[169,271],"(D)":[170,203,218,269],"abstracts,":[172],"while":[173],"accepting":[177],"or":[178],"rejecting":[179],"abstract":[181],"~80%":[182],"time.":[185],"Hence,":[186],"is":[193],"satisfactory.For":[194],"concept":[195],"extraction,":[196],"approved":[198],"35":[199],"25%":[202],"annotations.":[207,243],"Conversely,":[208],"successfully":[210],"annotated":[211],"up":[212],"36":[214],"68%":[217],"terms":[221],"identified":[222],"user":[226],"feedback":[227],"obtained":[228],"in":[229,237,259],"these":[230],"tests":[231],"highlighted":[232],"need":[234],"improvement":[236,257],"ranking":[239,254],"function":[240],"Therefore,":[244],"transformed":[246],"extraction":[249],"component":[250],"system.":[255],"This":[256],"top":[261],"(precision":[263],"at":[264],"rank)":[266],"59":[268],"(BP).":[272],"These":[273],"suggest":[275],"when":[277],"considering":[278],"only":[279],"extracted":[282],"entity,":[283],"current":[285],"achieves":[287],"comparable":[290],"biocurators.":[293]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1}],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2025-10-10T00:00:00"}
