{"id":"https://openalex.org/W2896378533","doi":"https://doi.org/10.1093/database/bay108","title":"LPTK: a linguistic pattern-aware dependency tree kernel approach for the BioCreative VI CHEMPROT task","display_name":"LPTK: a linguistic pattern-aware dependency tree kernel approach for the BioCreative VI CHEMPROT task","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2896378533","doi":"https://doi.org/10.1093/database/bay108","mag":"2896378533","pmid":"https://pubmed.ncbi.nlm.nih.gov/30346607"},"language":"en","primary_location":{"id":"doi:10.1093/database/bay108","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay108","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay108/27329121/bay108.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay108/27329121/bay108.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021745312","display_name":"Neha Warikoo","orcid":"https://orcid.org/0000-0003-4222-8970"},"institutions":[{"id":"https://openalex.org/I96323854","display_name":"National Yang Ming Chiao Tung University","ror":null,"country_code":"TW","type":null,"lineage":["https://openalex.org/I96323854"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Neha Warikoo","raw_affiliation_strings":["Bioinformatics Program, Taiwan International Graduate Program, Institute of Information Science, Academia Sinica, Taipei, Taiwan","Institute of Biomedical Informatics, National Yang-Ming University, Taipei, Taiwan","Institute of Information Science, Academia Sinica, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Program, Taiwan International Graduate Program, Institute of Information Science, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366"]},{"raw_affiliation_string":"Institute of Biomedical Informatics, National Yang-Ming University, Taipei, Taiwan","institution_ids":["https://openalex.org/I148366613","https://openalex.org/I96323854"]},{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018928362","display_name":"Yung\u2010Chun Chang","orcid":"https://orcid.org/0000-0002-9634-8380"},"institutions":[{"id":"https://openalex.org/I47519274","display_name":"Taipei Medical University","ror":"https://ror.org/05031qk94","country_code":"TW","type":"education","lineage":["https://openalex.org/I47519274"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Yung-Chun Chang","raw_affiliation_strings":["Graduate Institute of Data Science, Taipei Medical University, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"Graduate Institute of Data Science, Taipei Medical University, Taipei, Taiwan","institution_ids":["https://openalex.org/I47519274"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112054430","display_name":"Wen-Lian Hsu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Wen-Lian Hsu","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5018928362","https://openalex.org/A5112054430"],"corresponding_institution_ids":["https://openalex.org/I4210098366","https://openalex.org/I47519274"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.4707,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.82572055,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"2018","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7497429847717285},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6643068194389343},{"id":"https://openalex.org/keywords/tree-kernel","display_name":"Tree kernel","score":0.5982220768928528},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5672505497932434},{"id":"https://openalex.org/keywords/dependency","display_name":"Dependency (UML)","score":0.5530430674552917},{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.5499741435050964},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.5372412800788879},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4796869456768036},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.44568315148353577},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4232103228569031},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40529564023017883},{"id":"https://openalex.org/keywords/kernel-method","display_name":"Kernel method","score":0.3639342784881592},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.2351524531841278},{"id":"https://openalex.org/keywords/polynomial-kernel","display_name":"Polynomial kernel","score":0.16651251912117004},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13001927733421326},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.10794791579246521}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7497429847717285},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6643068194389343},{"id":"https://openalex.org/C140417398","wikidata":"https://www.wikidata.org/wiki/Q16933942","display_name":"Tree kernel","level":5,"score":0.5982220768928528},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5672505497932434},{"id":"https://openalex.org/C19768560","wikidata":"https://www.wikidata.org/wiki/Q320727","display_name":"Dependency (UML)","level":2,"score":0.5530430674552917},{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.5499741435050964},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.5372412800788879},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4796869456768036},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.44568315148353577},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4232103228569031},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40529564023017883},{"id":"https://openalex.org/C122280245","wikidata":"https://www.wikidata.org/wiki/Q620622","display_name":"Kernel method","level":3,"score":0.3639342784881592},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.2351524531841278},{"id":"https://openalex.org/C160446489","wikidata":"https://www.wikidata.org/wiki/Q7226642","display_name":"Polynomial kernel","level":4,"score":0.16651251912117004},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13001927733421326},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.10794791579246521},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008037","descriptor_name":"Linguistics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008037","descriptor_name":"Linguistics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008037","descriptor_name":"Linguistics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/bay108","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay108","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay108/27329121/bay108.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:30346607","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30346607","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:5147216","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6196310","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6196310","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6196310","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bay108","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay108","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay108/27329121/bay108.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1264396806","display_name":null,"funder_award_id":"MOST105-2221-E-001-008-MY3","funder_id":"https://openalex.org/F4320309618","funder_display_name":"Ministry of Science and Technology"},{"id":"https://openalex.org/G2339313840","display_name":null,"funder_award_id":"MOST106-3114-E-001-002","funder_id":"https://openalex.org/F4320309618","funder_display_name":"Ministry of Science and Technology"},{"id":"https://openalex.org/G782990970","display_name":null,"funder_award_id":"MOST106-2218-E-038-004-MY2","funder_id":"https://openalex.org/F4320309618","funder_display_name":"Ministry of Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320309618","display_name":"Ministry of Science and Technology","ror":"https://ror.org/02b207r52"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2896378533.pdf","grobid_xml":"https://content.openalex.org/works/W2896378533.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W151685798","https://openalex.org/W151785663","https://openalex.org/W192665053","https://openalex.org/W626058384","https://openalex.org/W1540550673","https://openalex.org/W1574901103","https://openalex.org/W1604792744","https://openalex.org/W1911287661","https://openalex.org/W1954715867","https://openalex.org/W1965324211","https://openalex.org/W1973406306","https://openalex.org/W1975048439","https://openalex.org/W1990794790","https://openalex.org/W1992442866","https://openalex.org/W2014036760","https://openalex.org/W2023736097","https://openalex.org/W2098551466","https://openalex.org/W2112543617","https://openalex.org/W2116786260","https://openalex.org/W2118864375","https://openalex.org/W2121075355","https://openalex.org/W2121111666","https://openalex.org/W2123442489","https://openalex.org/W2131297983","https://openalex.org/W2133280805","https://openalex.org/W2142572836","https://openalex.org/W2153348060","https://openalex.org/W2163922914","https://openalex.org/W2166111585","https://openalex.org/W2250861254","https://openalex.org/W2251444615","https://openalex.org/W2331398706","https://openalex.org/W2334487059","https://openalex.org/W2339107443","https://openalex.org/W2346452181","https://openalex.org/W2356285354","https://openalex.org/W2397012302","https://openalex.org/W2512456704","https://openalex.org/W2604372572","https://openalex.org/W2610394652","https://openalex.org/W2620949368","https://openalex.org/W2741609678","https://openalex.org/W2786724030","https://openalex.org/W2884871361","https://openalex.org/W4251294798","https://openalex.org/W4292907187","https://openalex.org/W6606143919","https://openalex.org/W6635263265","https://openalex.org/W6640904281","https://openalex.org/W6656420512","https://openalex.org/W6678152709","https://openalex.org/W6679915538","https://openalex.org/W6682321141","https://openalex.org/W6691269490","https://openalex.org/W6704842505","https://openalex.org/W6747927332","https://openalex.org/W6753968421"],"related_works":["https://openalex.org/W1983263273","https://openalex.org/W2179275589","https://openalex.org/W2089892314","https://openalex.org/W4291669689","https://openalex.org/W2167608136","https://openalex.org/W1603091392","https://openalex.org/W2095626363","https://openalex.org/W3123056048","https://openalex.org/W2031510368","https://openalex.org/W2001173190"],"abstract_inverted_index":{"Identifying":[0],"the":[1,14,22,73,93,117],"interactions":[2],"between":[3],"chemical":[4],"compounds":[5],"and":[6,119,146,159],"genes":[7],"from":[8],"biomedical":[9,54],"literatures":[10],"is":[11,157],"one":[12],"of":[13,18,78,83,95,111,121,128],"frequently":[15],"discussed":[16],"topics":[17],"text":[19],"mining":[20],"in":[21,86,124],"life":[23],"science":[24],"field.":[25],"In":[26,113],"this":[27],"paper,":[28],"we":[29,131],"describe":[30],"Linguistic":[31],"Pattern-Aware":[32],"Dependency":[33],"Tree":[34],"Kernel,":[35],"a":[36,59],"linguistic":[37,64,84],"interaction":[38,50],"pattern":[39],"learning":[40],"method":[41,77,156],"developed":[42],"for":[43,98,164],"CHEMPROT":[44,141],"task-BioCreative":[45],"VI,":[46],"to":[47,61,71,115],"capture":[48],"chemical-protein":[49],"(CPI)":[51],"patterns":[52,65],"within":[53],"literatures.":[55],"We":[56],"also":[57,101],"introduce":[58],"framework":[60,134],"integrate":[62],"these":[63],"with":[66],"smooth":[67],"partial":[68],"tree":[69],"kernel":[70],"extract":[72],"CPIs.":[74],"This":[75],"new":[76],"feature":[79,96],"representation":[80],"models":[81],"aspects":[82],"probability":[85],"geometric":[87],"representation,":[88],"which":[89],"not":[90],"only":[91],"optimizes":[92],"sufficiency":[94],"dimension":[97],"classification,":[99],"but":[100],"defines":[102],"features":[103],"as":[104],"interpretable":[105],"contexts":[106],"rather":[107],"than":[108],"long":[109],"vectors":[110],"numbers.":[112],"order":[114],"test":[116],"robustness":[118],"efficiency":[120],"our":[122,133,155],"system":[123],"identifying":[125],"different":[126],"kinds":[127],"biological":[129],"interactions,":[130],"evaluated":[132],"on":[135],"three":[136],"separate":[137],"data":[138,166],"sets,":[139],"i.e.":[140],"corpus,":[142],"Chemical-Disease":[143],"Relation":[144],"corpus":[145],"Protein-Protein":[147],"Interaction":[148],"corpus.":[149],"Corresponding":[150],"experiment":[151],"results":[152],"demonstrate":[153],"that":[154],"effective":[158],"outperforms":[160],"several":[161],"compared":[162],"systems":[163],"each":[165],"set.":[167]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":6}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
