{"id":"https://openalex.org/W2889645044","doi":"https://doi.org/10.1093/database/bay091","title":"Assisting document triage for human kinome curation via machine learning","display_name":"Assisting document triage for human kinome curation via machine learning","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2889645044","doi":"https://doi.org/10.1093/database/bay091","mag":"2889645044","pmid":"https://pubmed.ncbi.nlm.nih.gov/30239677"},"language":"en","primary_location":{"id":"doi:10.1093/database/bay091","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay091","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay091/27329360/bay091.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay091/27329360/bay091.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084428660","display_name":"Yi-Yu Hsu","orcid":"https://orcid.org/0000-0003-4286-3181"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yi-Yu Hsu","raw_affiliation_strings":["National Center for Biotechnology Information, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210109390"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058918482","display_name":"Chih-Hsuan Wei","orcid":"https://orcid.org/0000-0001-5094-7321"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chih-Hsuan Wei","raw_affiliation_strings":["National Center for Biotechnology Information, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210109390"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083081872","display_name":"Zhiyong Lu","orcid":"https://orcid.org/0000-0001-9998-916X"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Zhiyong Lu","raw_affiliation_strings":["National Center for Biotechnology Information, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210109390"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5083081872"],"corresponding_institution_ids":["https://openalex.org/I4210109390"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.4914,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.73244078,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"2018","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kinome","display_name":"Kinome","score":0.9369678497314453},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7456892728805542},{"id":"https://openalex.org/keywords/triage","display_name":"Triage","score":0.6674144268035889},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.6587446928024292},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.46368876099586487},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4345674514770508},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.34724849462509155},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33791279792785645},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10656490921974182},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.10254213213920593},{"id":"https://openalex.org/keywords/cell-culture","display_name":"Cell culture","score":0.07972964644432068}],"concepts":[{"id":"https://openalex.org/C54174078","wikidata":"https://www.wikidata.org/wiki/Q3197188","display_name":"Kinome","level":3,"score":0.9369678497314453},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7456892728805542},{"id":"https://openalex.org/C2777120189","wikidata":"https://www.wikidata.org/wiki/Q780067","display_name":"Triage","level":2,"score":0.6674144268035889},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.6587446928024292},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.46368876099586487},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4345674514770508},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34724849462509155},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33791279792785645},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10656490921974182},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.10254213213920593},{"id":"https://openalex.org/C81885089","wikidata":"https://www.wikidata.org/wiki/Q189082","display_name":"Cell culture","level":2,"score":0.07972964644432068},{"id":"https://openalex.org/C194828623","wikidata":"https://www.wikidata.org/wiki/Q2861470","display_name":"Emergency medicine","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bay091","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay091","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay091/27329360/bay091.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:30239677","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30239677","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:5099548","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6146134","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bay091","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay091","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay091/27329360/bay091.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.6100000143051147,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320328486","display_name":"Narodowy Instytut Lek\u00f3w","ror":"https://ror.org/05m2pwn60"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2889645044.pdf","grobid_xml":"https://content.openalex.org/works/W2889645044.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1558788122","https://openalex.org/W1610821757","https://openalex.org/W1832693441","https://openalex.org/W2044703561","https://openalex.org/W2093519416","https://openalex.org/W2097360283","https://openalex.org/W2105481534","https://openalex.org/W2112543617","https://openalex.org/W2118582067","https://openalex.org/W2124798372","https://openalex.org/W2153635508","https://openalex.org/W2171374484","https://openalex.org/W2250539671","https://openalex.org/W2414378847","https://openalex.org/W2470124677","https://openalex.org/W2550419310","https://openalex.org/W2752636837","https://openalex.org/W2787247269","https://openalex.org/W2952894920","https://openalex.org/W2963083845","https://openalex.org/W4294541781","https://openalex.org/W6633596712","https://openalex.org/W6688533166","https://openalex.org/W6762744339"],"related_works":["https://openalex.org/W4327951657","https://openalex.org/W2087992115","https://openalex.org/W2044043190","https://openalex.org/W3135649715","https://openalex.org/W2148691504","https://openalex.org/W2415312861","https://openalex.org/W4306317641","https://openalex.org/W1488337274","https://openalex.org/W4287611188","https://openalex.org/W2216178707"],"abstract_inverted_index":{"In":[0],"the":[1,6,41,54,104,112,118,122,141,152,178,182,201,212],"era":[2],"of":[3,9,69,107],"data":[4],"explosion,":[5],"increasing":[7],"frequency":[8],"published":[10],"articles":[11,44,75,110,139,168],"presents":[12],"unorthodox":[13],"challenges":[14],"to":[15,39,77,102,158,227],"fulfill":[16],"specific":[17],"curation":[18,46,105,125],"requirements":[19],"for":[20,51,73,177,209],"bio-literature":[21],"databases.":[22],"Recognizing":[23],"these":[24],"demands,":[25],"we":[26,58,95],"designed":[27],"a":[28],"document":[29],"triage":[30],"system":[31,66,131,161,172,198,223],"with":[32,88,140,207],"automatic":[33],"methods":[34,86],"that":[35,221],"can":[36,132],"improve":[37],"efficiency":[38],"retrieve":[40,134],"most":[42],"relevant":[43,142],"in":[45,64,67,117,127,165,203,231],"workflows":[47],"and":[48,99,136,145,175,189,195,211],"reduce":[49],"workloads":[50],"biocurators.":[52],"Since":[53],"BioCreative":[55,128],"VI":[56],"(2017),":[57],"have":[59],"implemented":[60],"texting":[61],"mining":[62],"processing":[63],"our":[65,130,160,171,222],"hopes":[68],"providing":[70],"higher":[71],"effectiveness":[72],"curating":[74],"related":[76],"human":[78,108,123],"kinase":[79,138],"proteins.":[80],"We":[81],"tested":[82],"several":[83],"machine":[84],"learning":[85],"together":[87],"state-of-the-art":[89],"concept":[90],"extraction":[91],"tools.":[92],"For":[93],"features,":[94],"extracted":[96],"rich":[97],"co-occurrence":[98],"linguistic":[100],"information":[101],"model":[103],"process":[106,147],"kinome":[109,124],"by":[111],"neXtProt":[113,229],"database.":[114],"As":[115],"shown":[116],"official":[119],"evaluation":[120],"on":[121],"task":[126],"VI,":[129],"effectively":[133],"5.2":[135],"6.5":[137],"disease":[143],"(DIS)":[144],"biological":[146],"(BP)":[148],"information,":[149],"respectively,":[150],"among":[151],"top":[153],"100":[154],"returned":[155],"results.":[156],"Comparing":[157],"neXtA5,":[159],"demonstrates":[162],"significant":[163],"improvements":[164],"prioritizing":[166],"kinome-related":[167],"as":[169],"follows:":[170],"achieves":[173],"0.458":[174],"0.109":[176],"DIS":[179],"axis":[180,206],"whereas":[181],"neXtA5's":[183,213],"best-reported":[184],"mean":[185],"average":[186],"precision":[187,191],"(MAP)":[188],"maximum":[190],"observed":[192],"are":[193],"0.41":[194],"0.04.":[196],"Our":[197],"also":[199],"outperforms":[200],"neXtA5":[202],"retrieving":[204],"BP":[205],"0.195":[208],"MAP":[210],"reported":[214],"value":[215],"was":[216],"0.11.":[217],"These":[218],"results":[219],"suggest":[220],"may":[224],"be":[225],"able":[226],"assist":[228],"biocurators":[230],"practice.":[232]},"counts_by_year":[{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
