{"id":"https://openalex.org/W2889480631","doi":"https://doi.org/10.1093/database/bay079","title":"A probabilistic automated tagger to identify human-related publications","display_name":"A probabilistic automated tagger to identify human-related publications","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2889480631","doi":"https://doi.org/10.1093/database/bay079","mag":"2889480631","pmid":"https://pubmed.ncbi.nlm.nih.gov/30184195"},"language":"en","primary_location":{"id":"doi:10.1093/database/bay079","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay079","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay079/27329169/bay079.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay079/27329169/bay079.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062561557","display_name":"Aaron Cohen","orcid":"https://orcid.org/0000-0002-4610-9912"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Aaron M Cohen","raw_affiliation_strings":["Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, OR, USA"],"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, OR, USA","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038664317","display_name":"Zackary O Dunivin","orcid":null},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zackary O Dunivin","raw_affiliation_strings":["Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, OR, USA"],"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, OR, USA","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033859037","display_name":"Neil R. Smalheiser","orcid":"https://orcid.org/0000-0003-1079-3406"},"institutions":[{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Neil R Smalheiser","raw_affiliation_strings":["Department of Psychiatry, University of Illinois at Chicago, Chicago, IL, USA"],"affiliations":[{"raw_affiliation_string":"Department of Psychiatry, University of Illinois at Chicago, Chicago, IL, USA","institution_ids":["https://openalex.org/I39422238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5062561557"],"corresponding_institution_ids":["https://openalex.org/I165690674"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.3723,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.60933419,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"2018","issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10206","display_name":"Meta-analysis and systematic reviews","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.8278255462646484},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7075327634811401},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5788995027542114},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.5534237623214722},{"id":"https://openalex.org/keywords/triage","display_name":"Triage","score":0.48250532150268555},{"id":"https://openalex.org/keywords/subject","display_name":"Subject (documents)","score":0.438294917345047},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3386209011077881},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3180423676967621},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2436271607875824},{"id":"https://openalex.org/keywords/medical-emergency","display_name":"Medical emergency","score":0.09577444195747375}],"concepts":[{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.8278255462646484},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7075327634811401},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5788995027542114},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.5534237623214722},{"id":"https://openalex.org/C2777120189","wikidata":"https://www.wikidata.org/wiki/Q780067","display_name":"Triage","level":2,"score":0.48250532150268555},{"id":"https://openalex.org/C2777855551","wikidata":"https://www.wikidata.org/wiki/Q12310021","display_name":"Subject (documents)","level":2,"score":0.438294917345047},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3386209011077881},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3180423676967621},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2436271607875824},{"id":"https://openalex.org/C545542383","wikidata":"https://www.wikidata.org/wiki/Q2751242","display_name":"Medical emergency","level":1,"score":0.09577444195747375},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002138","descriptor_name":"Calibration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002138","descriptor_name":"Calibration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002138","descriptor_name":"Calibration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bay079","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay079","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay079/27329169/bay079.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:30184195","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30184195","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:5099531","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6146117","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bay079","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay079","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay079/27329169/bay079.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8399999737739563,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G2291513218","display_name":null,"funder_award_id":"R01LM010817","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8732503268","display_name":null,"funder_award_id":"R01LM010817","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2889480631.pdf","grobid_xml":"https://content.openalex.org/works/W2889480631.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W74342042","https://openalex.org/W1539160141","https://openalex.org/W1981208470","https://openalex.org/W1996222277","https://openalex.org/W2014453502","https://openalex.org/W2118585731","https://openalex.org/W2122514515","https://openalex.org/W2142955026","https://openalex.org/W2150829828","https://openalex.org/W2160171761","https://openalex.org/W2428528690","https://openalex.org/W2516856487","https://openalex.org/W2562843520","https://openalex.org/W2777841127","https://openalex.org/W6602956537","https://openalex.org/W6677656871","https://openalex.org/W6683709678","https://openalex.org/W6747442897"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4394761728","https://openalex.org/W1975091423","https://openalex.org/W2144451503","https://openalex.org/W2033023095","https://openalex.org/W125325933","https://openalex.org/W2941176721","https://openalex.org/W2051773733","https://openalex.org/W2188505374","https://openalex.org/W1558342070"],"abstract_inverted_index":{"The":[0],"Medical":[1,65],"Subject":[2,66],"Heading":[3],"'Humans'":[4],"is":[5,45,59],"manually":[6],"curated":[7],"and":[8,25,40,86,111,166],"indicates":[9],"human-related":[10],"studies":[11],"within":[12],"MEDLINE.":[13],"However,":[14],"newly":[15],"published":[16,72],"MEDLINE":[17,70,147],"articles":[18,27,159],"may":[19],"take":[20],"months":[21],"to":[22,38,53,98,118,136,183,186],"be":[23,107],"indexed":[24,108,160],"non-MEDLINE":[26,191],"lack":[28,64],"consistent,":[29],"transparent":[30],"indexing":[31],"of":[32,141,143,199],"this":[33],"feature.":[34],"Therefore,":[35],"for":[36,48,190,202],"up":[37],"date":[39],"broad":[41],"literature":[42],"searches,":[43],"there":[44],"a":[46,56,103,180],"need":[47],"an":[49],"independent":[50],"automated":[51,153],"system":[52],"identify":[54],"whether":[55],"given":[57,104],"publication":[58],"human-related,":[60],"particularly":[61],"when":[62],"they":[63],"Headings.":[67],"One":[68],"million":[69],"records":[71,115],"in":[73,161,196],"1987-2014":[74],"were":[75,89],"randomly":[76],"selected.":[77],"Text-based":[78],"features":[79],"from":[80,116],"the":[81,100,126,152,169,197],"title,":[82],"abstract,":[83],"author":[84],"name":[85],"journal":[87],"fields":[88],"extracted.":[90],"A":[91],"linear":[92],"support":[93],"vector":[94],"machine":[95],"was":[96,112,122],"trained":[97],"estimate":[99],"probability":[101],"that":[102],"article":[105],"should":[106],"as":[109],"Humans":[110],"evaluated":[113],"on":[114],"2015":[117],"2016.":[119],"Overall":[120],"accuracy":[121],"high:":[123],"area":[124],"under":[125],"receiver":[127],"operating":[128],"curve":[129],"=":[130,133],"0.976,":[131],"F1":[132],"95%":[134],"relative":[135],"MeSH":[137],"indexing.":[138],"Manual":[139],"review":[140],"cases":[142],"extreme":[144],"disagreement":[145],"with":[146,151,163],"showed":[148],"73.5%":[149],"agreement":[150],"prediction.":[154],"We":[155,175],"have":[156,167,176],"tagged":[157],"all":[158],"PubMed":[162],"predictive":[164,188],"scores":[165,189],"made":[168,178],"information":[170],"publicly":[171],"available":[172,179],"at":[173],"http://arrowsmith.psych.uic.edu/evidence_based_medicine/index.html.":[174],"also":[177],"web-based":[181],"interface":[182],"allow":[184],"users":[185],"obtain":[187],"articles.":[192],"This":[193],"will":[194],"assist":[195],"triage":[198],"clinical":[200],"evidence":[201],"writing":[203],"systematic":[204],"reviews.":[205]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
