{"id":"https://openalex.org/W2888478394","doi":"https://doi.org/10.1093/database/bay076","title":"Hierarchical bi-directional attention-based RNNs for supporting document classification on protein\u2013protein interactions affected by genetic mutations","display_name":"Hierarchical bi-directional attention-based RNNs for supporting document classification on protein\u2013protein interactions affected by genetic mutations","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2888478394","doi":"https://doi.org/10.1093/database/bay076","mag":"2888478394","pmid":"https://pubmed.ncbi.nlm.nih.gov/30137284"},"language":"en","primary_location":{"id":"doi:10.1093/database/bay076","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay076","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay076/27438815/bay076.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay076/27438815/bay076.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010016053","display_name":"Aris Fergadis","orcid":null},"institutions":[{"id":"https://openalex.org/I174458059","display_name":"National Technical University of Athens","ror":"https://ror.org/03cx6bg69","country_code":"GR","type":"education","lineage":["https://openalex.org/I174458059"]},{"id":"https://openalex.org/I4210098364","display_name":"Institute for Language and Speech Processing","ror":"https://ror.org/00z24kr14","country_code":"GR","type":"nonprofit","lineage":["https://openalex.org/I4210098364"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Aris Fergadis","raw_affiliation_strings":["Institute for Language and Speech Processing, \u201cAthena\u201d Research and Innovation Center, Artemidos 6 & Epidavrou, Maroussi, Athens, Greece","School of Electrical and Computer Engineering, National Technical University of Athens, Zografou Campus 9, Iroon Polytechniou str, Athens, Greece","Institute for Language and Speech Processing, \"Athena\" Research and Innovation Center, Artemidos 6 & Epidavrou, Maroussi, Athens, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Language and Speech Processing, \u201cAthena\u201d Research and Innovation Center, Artemidos 6 & Epidavrou, Maroussi, Athens, Greece","institution_ids":["https://openalex.org/I4210098364"]},{"raw_affiliation_string":"School of Electrical and Computer Engineering, National Technical University of Athens, Zografou Campus 9, Iroon Polytechniou str, Athens, Greece","institution_ids":["https://openalex.org/I174458059"]},{"raw_affiliation_string":"Institute for Language and Speech Processing, \"Athena\" Research and Innovation Center, Artemidos 6 & Epidavrou, Maroussi, Athens, Greece","institution_ids":["https://openalex.org/I4210098364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035665045","display_name":"Christos Baziotis","orcid":null},"institutions":[{"id":"https://openalex.org/I174458059","display_name":"National Technical University of Athens","ror":"https://ror.org/03cx6bg69","country_code":"GR","type":"education","lineage":["https://openalex.org/I174458059"]},{"id":"https://openalex.org/I73142707","display_name":"Athens University of Economics and Business","ror":"https://ror.org/03s262162","country_code":"GR","type":"education","lineage":["https://openalex.org/I73142707"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Christos Baziotis","raw_affiliation_strings":["Department of Informatics, Athens University of Economics and Business, 76 Patission Str., Athens, Greece","School of Electrical and Computer Engineering, National Technical University of Athens, Zografou Campus 9, Iroon Polytechniou str, Athens, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Athens University of Economics and Business, 76 Patission Str., Athens, Greece","institution_ids":["https://openalex.org/I73142707"]},{"raw_affiliation_string":"School of Electrical and Computer Engineering, National Technical University of Athens, Zografou Campus 9, Iroon Polytechniou str, Athens, Greece","institution_ids":["https://openalex.org/I174458059"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001794274","display_name":"Dimitris Pappas","orcid":"https://orcid.org/0000-0001-5784-0658"},"institutions":[{"id":"https://openalex.org/I4210098364","display_name":"Institute for Language and Speech Processing","ror":"https://ror.org/00z24kr14","country_code":"GR","type":"nonprofit","lineage":["https://openalex.org/I4210098364"]},{"id":"https://openalex.org/I73142707","display_name":"Athens University of Economics and Business","ror":"https://ror.org/03s262162","country_code":"GR","type":"education","lineage":["https://openalex.org/I73142707"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Dimitris Pappas","raw_affiliation_strings":["Department of Informatics, Athens University of Economics and Business, 76 Patission Str., Athens, Greece","Institute for Language and Speech Processing, \u201cAthena\u201d Research and Innovation Center, Artemidos 6 & Epidavrou, Maroussi, Athens, Greece","Institute for Language and Speech Processing, \"Athena\" Research and Innovation Center, Artemidos 6 & Epidavrou, Maroussi, Athens, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Athens University of Economics and Business, 76 Patission Str., Athens, Greece","institution_ids":["https://openalex.org/I73142707"]},{"raw_affiliation_string":"Institute for Language and Speech Processing, \u201cAthena\u201d Research and Innovation Center, Artemidos 6 & Epidavrou, Maroussi, Athens, Greece","institution_ids":["https://openalex.org/I4210098364"]},{"raw_affiliation_string":"Institute for Language and Speech Processing, \"Athena\" Research and Innovation Center, Artemidos 6 & Epidavrou, Maroussi, Athens, Greece","institution_ids":["https://openalex.org/I4210098364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028083798","display_name":"Haris Papageorgiou","orcid":"https://orcid.org/0000-0002-7352-2403"},"institutions":[{"id":"https://openalex.org/I4210098364","display_name":"Institute for Language and Speech Processing","ror":"https://ror.org/00z24kr14","country_code":"GR","type":"nonprofit","lineage":["https://openalex.org/I4210098364"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Haris Papageorgiou","raw_affiliation_strings":["Institute for Language and Speech Processing, \u201cAthena\u201d Research and Innovation Center, Artemidos 6 & Epidavrou, Maroussi, Athens, Greece","Institute for Language and Speech Processing, \"Athena\" Research and Innovation Center, Artemidos 6 & Epidavrou, Maroussi, Athens, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Language and Speech Processing, \u201cAthena\u201d Research and Innovation Center, Artemidos 6 & Epidavrou, Maroussi, Athens, Greece","institution_ids":["https://openalex.org/I4210098364"]},{"raw_affiliation_string":"Institute for Language and Speech Processing, \"Athena\" Research and Innovation Center, Artemidos 6 & Epidavrou, Maroussi, Athens, Greece","institution_ids":["https://openalex.org/I4210098364"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084949286","display_name":"Alexandros Potamianos","orcid":"https://orcid.org/0009-0007-1532-5288"},"institutions":[{"id":"https://openalex.org/I174458059","display_name":"National Technical University of Athens","ror":"https://ror.org/03cx6bg69","country_code":"GR","type":"education","lineage":["https://openalex.org/I174458059"]},{"id":"https://openalex.org/I4210098364","display_name":"Institute for Language and Speech Processing","ror":"https://ror.org/00z24kr14","country_code":"GR","type":"nonprofit","lineage":["https://openalex.org/I4210098364"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Alexandros Potamianos","raw_affiliation_strings":["Institute for Language and Speech Processing, \u201cAthena\u201d Research and Innovation Center, Artemidos 6 & Epidavrou, Maroussi, Athens, Greece","School of Electrical and Computer Engineering, National Technical University of Athens, Zografou Campus 9, Iroon Polytechniou str, Athens, Greece","Institute for Language and Speech Processing, \"Athena\" Research and Innovation Center, Artemidos 6 & Epidavrou, Maroussi, Athens, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Language and Speech Processing, \u201cAthena\u201d Research and Innovation Center, Artemidos 6 & Epidavrou, Maroussi, Athens, Greece","institution_ids":["https://openalex.org/I4210098364"]},{"raw_affiliation_string":"School of Electrical and Computer Engineering, National Technical University of Athens, Zografou Campus 9, Iroon Polytechniou str, Athens, Greece","institution_ids":["https://openalex.org/I174458059"]},{"raw_affiliation_string":"Institute for Language and Speech Processing, \"Athena\" Research and Innovation Center, Artemidos 6 & Epidavrou, Maroussi, Athens, Greece","institution_ids":["https://openalex.org/I4210098364"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5010016053"],"corresponding_institution_ids":["https://openalex.org/I174458059","https://openalex.org/I4210098364"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.4948,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.62055399,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"2018","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8195240497589111},{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.6954748034477234},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6437364220619202},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.6379535794258118},{"id":"https://openalex.org/keywords/recurrent-neural-network","display_name":"Recurrent neural network","score":0.6189358234405518},{"id":"https://openalex.org/keywords/feature-vector","display_name":"Feature vector","score":0.5984242558479309},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5953691601753235},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.5197098255157471},{"id":"https://openalex.org/keywords/word-embedding","display_name":"Word embedding","score":0.48853620886802673},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.3770889639854431},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3674106001853943},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.20960521697998047}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8195240497589111},{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.6954748034477234},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6437364220619202},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.6379535794258118},{"id":"https://openalex.org/C147168706","wikidata":"https://www.wikidata.org/wiki/Q1457734","display_name":"Recurrent neural network","level":3,"score":0.6189358234405518},{"id":"https://openalex.org/C83665646","wikidata":"https://www.wikidata.org/wiki/Q42139305","display_name":"Feature vector","level":2,"score":0.5984242558479309},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5953691601753235},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.5197098255157471},{"id":"https://openalex.org/C2777462759","wikidata":"https://www.wikidata.org/wiki/Q18395344","display_name":"Word embedding","level":3,"score":0.48853620886802673},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.3770889639854431},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3674106001853943},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.20960521697998047},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bay076","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay076","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay076/27438815/bay076.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:30137284","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30137284","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:5052717","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6105093","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bay076","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay076","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay076/27438815/bay076.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.41999998688697815,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1337233005","display_name":null,"funder_award_id":"NSRF 2014-2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5634946813","display_name":null,"funder_award_id":"2014-2020","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G6870533126","display_name":null,"funder_award_id":"2014-2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7538097724","display_name":null,"funder_award_id":"NSRF 2014-2020","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2888478394.pdf","grobid_xml":"https://content.openalex.org/works/W2888478394.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1582774210","https://openalex.org/W1603229901","https://openalex.org/W1964670939","https://openalex.org/W2022888213","https://openalex.org/W2034551256","https://openalex.org/W2062707524","https://openalex.org/W2064030835","https://openalex.org/W2064675550","https://openalex.org/W2074162075","https://openalex.org/W2095705004","https://openalex.org/W2097998348","https://openalex.org/W2098740506","https://openalex.org/W2119387367","https://openalex.org/W2121570534","https://openalex.org/W2123579157","https://openalex.org/W2131774270","https://openalex.org/W2144890062","https://openalex.org/W2168905447","https://openalex.org/W2559034752","https://openalex.org/W2750747353","https://openalex.org/W2963082289","https://openalex.org/W6674330103","https://openalex.org/W6674385629"],"related_works":["https://openalex.org/W4225394202","https://openalex.org/W4298287631","https://openalex.org/W2953061907","https://openalex.org/W3032952384","https://openalex.org/W3034302643","https://openalex.org/W1847088711","https://openalex.org/W3036642985","https://openalex.org/W2964335273","https://openalex.org/W2944541365","https://openalex.org/W2507611421"],"abstract_inverted_index":{"In":[0,90],"this":[1,123,158,208],"paper,":[2],"we":[3,93,160,210,225],"describe":[4],"a":[5,14,56,60,102,151,162],"hierarchical":[6,71],"bi-directional":[7,37],"attention-based":[8],"Re-current":[9],"Neural":[10],"Network":[11],"(RNN)":[12],"as":[13,22,201],"reusable":[15],"sequence":[16,31],"encoder":[17,26,32],"architecture,":[18],"which":[19,75],"is":[20,33],"used":[21,200],"sentence":[23,153,183],"and":[24,46,82,189,224,231,237],"document":[25,28,57,197],"for":[27,63,113],"classification.":[29],"The":[30],"composed":[34,77,85],"of":[35,73,78,80,86,88,118,140,177,192,217],"two":[36],"RNN":[38],"equipped":[39],"with":[40,234],"an":[41],"attention":[42],"mechanism":[43],"that":[44,137,165,185],"identifies":[45],"captures":[47],"the":[48,64,70,99,115,138,141,155,167,173,178,182,187,190,193,196,204,213,218,235,240,245],"most":[49],"important":[50,146],"elements,":[51],"words":[52,100],"or":[53],"sentences,":[54],"in":[55,133,154,212],"followed":[58],"by":[59],"dense":[61],"layer":[62,117],"classification":[65],"task.":[66],"Our":[67],"approach":[68],"utilizes":[69],"nature":[72],"documents":[74],"are":[76,84],"sequences":[79,87],"sentences":[81,83],"words.":[89],"our":[91,119],"model,":[92],"use":[94],"word":[95,108],"embeddings":[96,109],"to":[97,101,125,172,195,203],"project":[98],"low-dimensional":[103],"vector":[104,169,184,199],"space.":[105],"We":[106,121,135,180],"leverage":[107],"trained":[110],"on":[111,129],"PubMed":[112],"initializing":[114],"embedding":[116],"network.":[120],"apply":[122],"model":[124],"biomedical":[126],"literature":[127],"specifically,":[128],"paper":[130,142],"abstracts":[131],"published":[132],"PubMed.":[134],"argue":[136],"title":[139,168,188],"itself":[143],"usually":[144],"contains":[145],"information":[147],"more":[148],"salient":[149],"than":[150],"typical":[152],"abstract.":[156],"For":[157],"reason,":[159],"propose":[161],"shortcut":[163],"connection":[164],"integrates":[166],"representation":[170,176],"directly":[171],"final":[174],"feature":[175,198],"document.":[179],"concatenate":[181],"represents":[186],"vectors":[191],"abstract":[194],"input":[202],"task":[205],"classifier.":[206],"With":[207],"system":[209],"participated":[211],"Document":[214],"Triage":[215],"Task":[216],"BioCreative":[219],"VI":[220],"Precision":[221,236],"Medicine":[222],"Track":[223],"achieved":[226],"0.6289":[227],"Precision,":[228],"0.7656":[229],"Recall":[230],"0.6906":[232],"F1-score":[233,238],"be":[239],"highest":[241],"ranking":[242],"first":[243],"among":[244],"other":[246],"systems.Database":[247],"URL:":[248],"https://github.com/afergadis/BC6PM-HRNN.":[249]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
