{"id":"https://openalex.org/W2809365035","doi":"https://doi.org/10.1093/database/bay061","title":"LncCeRBase: a database of experimentally validated human competing endogenous long non-coding RNAs","display_name":"LncCeRBase: a database of experimentally validated human competing endogenous long non-coding RNAs","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2809365035","doi":"https://doi.org/10.1093/database/bay061","mag":"2809365035","pmid":"https://pubmed.ncbi.nlm.nih.gov/29961817"},"language":"en","primary_location":{"id":"doi:10.1093/database/bay061","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay061","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay061/28860732/bay061.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay061/28860732/bay061.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024796378","display_name":"Cong Pian","orcid":"https://orcid.org/0000-0001-7401-2926"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Cong Pian","raw_affiliation_strings":["Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Science, Zhejiang University, 866 Yuhangtang Road, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Science, Zhejiang University, 866 Yuhangtang Road, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102349179","display_name":"Guangle Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guangle Zhang","raw_affiliation_strings":["Department of Mathematics, College of Science, Nanjing Agricultural University, Nanjing, Jiangsu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, College of Science, Nanjing Agricultural University, Nanjing, Jiangsu, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046654644","display_name":"Tengfei Tu","orcid":"https://orcid.org/0000-0001-5683-5347"},"institutions":[{"id":"https://openalex.org/I139759216","display_name":"Beijing University of Posts and Telecommunications","ror":"https://ror.org/04w9fbh59","country_code":"CN","type":"education","lineage":["https://openalex.org/I139759216"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tengfei Tu","raw_affiliation_strings":["Network Security Research Group, Institute of Network Technology, Beijing University of Posts and Telecommunications, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Network Security Research Group, Institute of Network Technology, Beijing University of Posts and Telecommunications, Beijing, China","institution_ids":["https://openalex.org/I139759216"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100775558","display_name":"Xiangyu Ma","orcid":"https://orcid.org/0000-0001-7967-3950"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangyu Ma","raw_affiliation_strings":["School of Life Science, Anhui Agriculture University, Hefei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science, Anhui Agriculture University, Hefei, China","institution_ids":["https://openalex.org/I140221134"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100325856","display_name":"Fei Li","orcid":"https://orcid.org/0000-0002-8410-5250"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fei Li","raw_affiliation_strings":["Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Science, Zhejiang University, 866 Yuhangtang Road, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Science, Zhejiang University, 866 Yuhangtang Road, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100325856"],"corresponding_institution_ids":["https://openalex.org/I76130692"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.6008,"has_fulltext":true,"cited_by_count":35,"citation_normalized_percentile":{"value":0.81510689,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"2018","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/competing-endogenous-rna","display_name":"Competing endogenous RNA","score":0.9585899114608765},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.806901216506958},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6302367448806763},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6078181862831116},{"id":"https://openalex.org/keywords/endogeny","display_name":"Endogeny","score":0.536539614200592},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5264109969139099},{"id":"https://openalex.org/keywords/long-non-coding-rna","display_name":"Long non-coding RNA","score":0.4503905475139618},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.3987123370170593},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.29242461919784546}],"concepts":[{"id":"https://openalex.org/C60365752","wikidata":"https://www.wikidata.org/wiki/Q5156306","display_name":"Competing endogenous RNA","level":5,"score":0.9585899114608765},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.806901216506958},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6302367448806763},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6078181862831116},{"id":"https://openalex.org/C16613235","wikidata":"https://www.wikidata.org/wiki/Q285982","display_name":"Endogeny","level":2,"score":0.536539614200592},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5264109969139099},{"id":"https://openalex.org/C62203573","wikidata":"https://www.wikidata.org/wiki/Q15087973","display_name":"Long non-coding RNA","level":4,"score":0.4503905475139618},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.3987123370170593},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.29242461919784546},{"id":"https://openalex.org/C134018914","wikidata":"https://www.wikidata.org/wiki/Q162606","display_name":"Endocrinology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/database/bay061","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay061","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay061/28860732/bay061.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:29961817","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29961817","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmid:31236560","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31236560","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:4969399","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6014130","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6014130","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6014130","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6591534","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6591534","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bay061","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay061","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay061/28860732/bay061.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2799957510","display_name":null,"funder_award_id":"2017YFC1200602","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8161196759","display_name":null,"funder_award_id":"2016YFC1200600","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2809365035.pdf","grobid_xml":"https://content.openalex.org/works/W2809365035.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1685280444","https://openalex.org/W1966498224","https://openalex.org/W1974720903","https://openalex.org/W1985205042","https://openalex.org/W2006556963","https://openalex.org/W2009695080","https://openalex.org/W2010040849","https://openalex.org/W2023691360","https://openalex.org/W2046387002","https://openalex.org/W2052250375","https://openalex.org/W2052893861","https://openalex.org/W2068517905","https://openalex.org/W2071271349","https://openalex.org/W2077327925","https://openalex.org/W2093404711","https://openalex.org/W2102364475","https://openalex.org/W2103152808","https://openalex.org/W2119726708","https://openalex.org/W2128983843","https://openalex.org/W2136222002","https://openalex.org/W2141248654","https://openalex.org/W2165697084","https://openalex.org/W2169777381","https://openalex.org/W2202471480","https://openalex.org/W2523970725","https://openalex.org/W2596417560","https://openalex.org/W2613389355","https://openalex.org/W2624144301","https://openalex.org/W2744472828","https://openalex.org/W6727704602","https://openalex.org/W6738881864"],"related_works":["https://openalex.org/W2927233132","https://openalex.org/W2400832891","https://openalex.org/W2962733257","https://openalex.org/W2901590794","https://openalex.org/W2912601922","https://openalex.org/W3162111133","https://openalex.org/W3011100609","https://openalex.org/W2903735212","https://openalex.org/W3110530940","https://openalex.org/W2905497924"],"abstract_inverted_index":{"Long":[0],"non-coding":[1],"RNAs":[2,27],"(lncRNAs)":[3],"are":[4,21],"endogenous":[5,26],"molecules":[6],"longer":[7],"than":[8],"200":[9],"nucleotides,":[10],"and":[11,29,49,85],"lack":[12],"coding":[13],"potential.":[14],"LncRNAs":[15],"that":[16],"interact":[17],"with":[18,99],"microRNAs":[19],"(miRNAs)":[20],"known":[22],"as":[23,104],"a":[24,60,63,105],"competing":[25],"(ceRNAs)":[28],"have":[30],"the":[31,35,47,72,95,100,116],"ability":[32],"to":[33,107],"regulate":[34],"expression":[36],"of":[37,51,65,119],"target":[38],"genes.":[39],"The":[40],"ceRNAs":[41],"play":[42],"an":[43],"important":[44],"role":[45],"in":[46],"initiation":[48],"progression":[50],"various":[52],"cancers.":[53],"However,":[54],"until":[55],"now,":[56],"there":[57],"is":[58,112],"no":[59],"database":[61],"including":[62,80],"collection":[64],"experimentally":[66],"verified,":[67],"human":[68],"ceRNAs.":[69],"We":[70],"developed":[71],"LncCeRBase":[73,111],"database,":[74],"which":[75],"encompasses":[76],"432":[77],"lncRNA-miRNA-mRNA":[78,102],"interactions,":[79],"130":[81],"lncRNAs,":[82],"214":[83],"miRNAs":[84],"245":[86],"genes":[87],"from":[88],"300":[89],"publications.":[90],"In":[91],"addition,":[92],"we":[93],"compiled":[94],"signaling":[96],"pathways":[97],"associated":[98],"included":[101],"interactions":[103],"tool":[106],"explore":[108],"their":[109],"functions.":[110],"useful":[113],"for":[114],"understanding":[115],"regulatory":[117],"mechanisms":[118],"lncRNA.Database":[120],"URL:":[121],"http://lnccerbase.it1004.com.":[122]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":2}],"updated_date":"2026-05-03T08:25:01.440150","created_date":"2018-06-29T00:00:00"}
