{"id":"https://openalex.org/W2949725218","doi":"https://doi.org/10.1093/database/bay054","title":"RBPMetaDB: a comprehensive annotation of mouse RNA-Seq datasets with perturbations of RNA-binding proteins","display_name":"RBPMetaDB: a comprehensive annotation of mouse RNA-Seq datasets with perturbations of RNA-binding proteins","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2949725218","doi":"https://doi.org/10.1093/database/bay054","mag":"2949725218","pmid":"https://pubmed.ncbi.nlm.nih.gov/29931156"},"language":"en","primary_location":{"id":"doi:10.1093/database/bay054","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay054","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay054/27438707/bay054.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay054/27438707/bay054.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100364832","display_name":"Jin Li","orcid":"https://orcid.org/0000-0003-2875-3314"},"institutions":[{"id":"https://openalex.org/I173268674","display_name":"Texas A&M University System","ror":"https://ror.org/0034eay46","country_code":"US","type":"education","lineage":["https://openalex.org/I173268674"]},{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jin Li","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, USA","TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering, Texas A&M University, College Station, TX 77843, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, USA","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering, Texas A&M University, College Station, TX 77843, USA","institution_ids":["https://openalex.org/I173268674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010612686","display_name":"Su-Ping Deng","orcid":"https://orcid.org/0000-0001-6619-6497"},"institutions":[{"id":"https://openalex.org/I173268674","display_name":"Texas A&M University System","ror":"https://ror.org/0034eay46","country_code":"US","type":"education","lineage":["https://openalex.org/I173268674"]},{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Su-Ping Deng","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, USA","TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering, Texas A&M University, College Station, TX 77843, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, USA","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering, Texas A&M University, College Station, TX 77843, USA","institution_ids":["https://openalex.org/I173268674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046992774","display_name":"Jacob Vieira","orcid":"https://orcid.org/0000-0002-7627-4943"},"institutions":[{"id":"https://openalex.org/I24603500","display_name":"University of Massachusetts Amherst","ror":"https://ror.org/0072zz521","country_code":"US","type":"education","lineage":["https://openalex.org/I24603500"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jacob Vieira","raw_affiliation_strings":["The Department of Microbiology, University of Massachusetts Amherst, Amherst, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Department of Microbiology, University of Massachusetts Amherst, Amherst, MA, USA","institution_ids":["https://openalex.org/I24603500"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101901661","display_name":"James D. Thomas","orcid":"https://orcid.org/0000-0002-8893-6350"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James Thomas","raw_affiliation_strings":["Department of Molecular Genetics and Microbiology, Center for NeuroGenetics and the Genetics Institute, College of Medicine, University of Florida, Gainesville, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Genetics and Microbiology, Center for NeuroGenetics and the Genetics Institute, College of Medicine, University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028820532","display_name":"Valerio Costa","orcid":"https://orcid.org/0000-0002-7294-6933"},"institutions":[{"id":"https://openalex.org/I4210137461","display_name":"Institute of Genetics and Biophysics","ror":"https://ror.org/04hadk112","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210137461","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Valerio Costa","raw_affiliation_strings":["Institute of Genetics and Biophysics \u201cAdriano Buzzati-Traverso\u201d, Consiglio Nazionale delle Ricerche, Via P. Castellino 111, 80131 Naples, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Genetics and Biophysics \u201cAdriano Buzzati-Traverso\u201d, Consiglio Nazionale delle Ricerche, Via P. Castellino 111, 80131 Naples, Italy","institution_ids":["https://openalex.org/I4210137461","https://openalex.org/I4210155236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004810166","display_name":"Ching-San Tseng","orcid":"https://orcid.org/0000-0002-9591-0896"},"institutions":[{"id":"https://openalex.org/I4210132902","display_name":"Institute of Cellular and Organismic Biology, Academia Sinica","ror":"https://ror.org/048evbw70","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210132902","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Ching-San Tseng","raw_affiliation_strings":["Institute of Cellular and Organismic Biology, Academia Sinica, Taipei 11529, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Cellular and Organismic Biology, Academia Sinica, Taipei 11529, Taiwan","institution_ids":["https://openalex.org/I4210132902"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090243609","display_name":"Franjo Ivankovic","orcid":"https://orcid.org/0000-0002-6776-8626"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Franjo Ivankovic","raw_affiliation_strings":["Department of Molecular Genetics and Microbiology, Center for NeuroGenetics and the Genetics Institute, College of Medicine, University of Florida, Gainesville, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Genetics and Microbiology, Center for NeuroGenetics and the Genetics Institute, College of Medicine, University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009911982","display_name":"Alfredo Ciccodicola","orcid":"https://orcid.org/0000-0002-9924-1482"},"institutions":[{"id":"https://openalex.org/I183638586","display_name":"Parthenope University of Naples","ror":"https://ror.org/05pcv4v03","country_code":"IT","type":"education","lineage":["https://openalex.org/I183638586"]},{"id":"https://openalex.org/I4210137461","display_name":"Institute of Genetics and Biophysics","ror":"https://ror.org/04hadk112","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210137461","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alfredo Ciccodicola","raw_affiliation_strings":["Department of Science and Technology, University Parthenope of Naples, 80131 Naples, Italy","Institute of Genetics and Biophysics \u201cAdriano Buzzati-Traverso\u201d, Consiglio Nazionale delle Ricerche, Via P. Castellino 111, 80131 Naples, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Science and Technology, University Parthenope of Naples, 80131 Naples, Italy","institution_ids":["https://openalex.org/I183638586"]},{"raw_affiliation_string":"Institute of Genetics and Biophysics \u201cAdriano Buzzati-Traverso\u201d, Consiglio Nazionale delle Ricerche, Via P. Castellino 111, 80131 Naples, Italy","institution_ids":["https://openalex.org/I4210137461","https://openalex.org/I4210155236"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004456961","display_name":"Peng Yu","orcid":"https://orcid.org/0000-0002-3948-3340"},"institutions":[{"id":"https://openalex.org/I173268674","display_name":"Texas A&M University System","ror":"https://ror.org/0034eay46","country_code":"US","type":"education","lineage":["https://openalex.org/I173268674"]},{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Peng Yu","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, USA","TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering, Texas A&M University, College Station, TX 77843, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, USA","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering, Texas A&M University, College Station, TX 77843, USA","institution_ids":["https://openalex.org/I173268674"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5004456961"],"corresponding_institution_ids":["https://openalex.org/I173268674","https://openalex.org/I91045830"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.4638,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.6460931,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"2018","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-binding-protein","display_name":"RNA-binding protein","score":0.6502696871757507},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6294814944267273},{"id":"https://openalex.org/keywords/polyadenylation","display_name":"Polyadenylation","score":0.5975507497787476},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5879994630813599},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.5181766748428345},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.48154786229133606},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4698713421821594},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.40068042278289795},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.33963340520858765}],"concepts":[{"id":"https://openalex.org/C41282012","wikidata":"https://www.wikidata.org/wiki/Q3928341","display_name":"RNA-binding protein","level":4,"score":0.6502696871757507},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6294814944267273},{"id":"https://openalex.org/C142575336","wikidata":"https://www.wikidata.org/wiki/Q412148","display_name":"Polyadenylation","level":4,"score":0.5975507497787476},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5879994630813599},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.5181766748428345},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48154786229133606},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4698713421821594},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.40068042278289795},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.33963340520858765}],"mesh":[{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/bay054","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay054","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay054/27438707/bay054.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:29931156","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29931156","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:4966280","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6009576","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6009576","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6009576","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"pmh:oai:ricerca.uniparthenope.it:11367/81488","is_oa":false,"landing_page_url":"http://database.oxfordjournals.org/","pdf_url":null,"source":{"id":"https://openalex.org/S4377196432","display_name":"CINECA IRIS Institutial research information system (Parthenope University of Naples)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I183638586","host_organization_name":"Parthenope University of Naples","host_organization_lineage":["https://openalex.org/I183638586"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/database/bay054","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay054","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay054/27438707/bay054.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310164","display_name":"Texas A and M University","ror":"https://ror.org/01f5ytq51"},{"id":"https://openalex.org/F4320333554","display_name":"College of Engineering, Texas A and M University","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1843824229","https://openalex.org/W1865161519","https://openalex.org/W1936861715","https://openalex.org/W1964904043","https://openalex.org/W1984574291","https://openalex.org/W2005140272","https://openalex.org/W2024955503","https://openalex.org/W2047603136","https://openalex.org/W2063614307","https://openalex.org/W2074236586","https://openalex.org/W2076563297","https://openalex.org/W2103017472","https://openalex.org/W2104109395","https://openalex.org/W2118258530","https://openalex.org/W2124425346","https://openalex.org/W2146749911","https://openalex.org/W2153668970","https://openalex.org/W2224056471","https://openalex.org/W2229032859","https://openalex.org/W2506844760","https://openalex.org/W2613784941","https://openalex.org/W2712900661","https://openalex.org/W2739999456","https://openalex.org/W2800190581","https://openalex.org/W2804522001","https://openalex.org/W2951403620","https://openalex.org/W2951764713","https://openalex.org/W2952559245","https://openalex.org/W2952849455","https://openalex.org/W2952856419","https://openalex.org/W2952877677","https://openalex.org/W3106930452","https://openalex.org/W6725437648"],"related_works":["https://openalex.org/W2116965031","https://openalex.org/W1959417209","https://openalex.org/W2140894105","https://openalex.org/W2410356291","https://openalex.org/W2024593827","https://openalex.org/W4311197738","https://openalex.org/W2100377381","https://openalex.org/W2736233016","https://openalex.org/W2912872496","https://openalex.org/W2188974066"],"abstract_inverted_index":{"RNA-binding":[0,180,189,208],"proteins":[1],"(RBPs)":[2],"may":[3],"play":[4],"a":[5,43,53,83,100,112,145,233],"critical":[6],"role":[7],"in":[8,11,40,52,129,170],"gene":[9,41],"regulation":[10],"various":[12],"diseases":[13],"or":[14],"biological":[15,241],"processes":[16],"by":[17],"controlling":[18],"post-transcriptional":[19],"events":[20],"such":[21],"as":[22],"polyadenylation,":[23],"splicing":[24],"and":[25,97,179,221],"mRNA":[26],"stabilization":[27],"via":[28],"binding":[29],"activities":[30,164,186],"to":[31,35,153,196,217],"RNA":[32],"molecules.":[33],"Owing":[34],"the":[36,80,194,204,240],"importance":[37],"of":[38,46,56,68,82,86,115,124,148,176,188,203,206,224,239,243],"RBPs":[39,94,119,127,150,169],"regulation,":[42],"great":[44,146,234],"number":[45],"studies":[47,175],"have":[48,65],"been":[49,215],"conducted,":[50],"resulting":[51],"large":[54],"amount":[55],"RNA-Seq":[57,90,109],"datasets.":[58],"However,":[59],"these":[60,177,199],"datasets":[61,91,110],"usually":[62],"do":[63],"not":[64],"structured":[66],"organization":[67],"metadata,":[69],"which":[70],"limits":[71],"their":[72,207],"potentially":[73],"wide":[74,222],"use.":[75],"To":[76],"bridge":[77],"this":[78],"gap,":[79],"metadata":[81],"comprehensive":[84,113],"set":[85],"publicly":[87],"available":[88],"mouse":[89,108],"with":[92],"perturbed":[93],"were":[95],"collected":[96],"integrated":[98],"into":[99],"database":[101,105],"called":[102],"RBPMetaDB.":[103,225],"This":[104,141,191],"contains":[106],"292":[107],"for":[111,121,151,201,236],"list":[114],"187":[116],"RBPs.":[117],"These":[118],"account":[120],"only":[122],"\u223c10%":[123],"all":[125],"known":[126],"annotated":[128],"Gene":[130],"Ontology,":[131],"indicating":[132],"that":[133,162,173,229],"most":[134],"are":[135,165],"still":[136],"unexplored":[137],"using":[138],"high-throughput":[139],"sequencing.":[140],"negative":[142],"information":[143],"provides":[144],"pool":[147],"candidate":[149],"biologists":[152],"conduct":[154],"future":[155],"experimental":[156],"studies.":[157],"In":[158],"addition,":[159],"we":[160],"found":[161],"DNA-binding":[163,185],"significantly":[166],"enriched":[167],"among":[168],"RBPMetaDB,":[171],"suggesting":[172],"prior":[174],"DNA-":[178],"factors":[181],"focus":[182],"more":[183],"on":[184],"instead":[187],"activities.":[190,209],"result":[192],"reveals":[193],"opportunity":[195],"efficiently":[197],"reuse":[198],"data":[200],"investigation":[202],"roles":[205,242],"A":[210],"web":[211],"application":[212],"has":[213],"also":[214],"implemented":[216],"enable":[218],"easy":[219],"access":[220],"use":[223],"It":[226],"is":[227],"expected":[228],"RBPMetaDB":[230],"will":[231],"be":[232],"resource":[235],"improving":[237],"understanding":[238],"RBPs.Database":[244],"URL:":[245],"http://rbpmetadb.yubiolab.org.":[246]},"counts_by_year":[{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":3}],"updated_date":"2026-05-19T21:40:30.786675","created_date":"2025-10-10T00:00:00"}
