{"id":"https://openalex.org/W2795434962","doi":"https://doi.org/10.1093/database/bay029","title":"An entropy-reducing data representation approach for bioinformatic data","display_name":"An entropy-reducing data representation approach for bioinformatic data","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2795434962","doi":"https://doi.org/10.1093/database/bay029","mag":"2795434962","pmid":"https://pubmed.ncbi.nlm.nih.gov/29688382"},"language":"en","primary_location":{"id":"doi:10.1093/database/bay029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay029","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay029/27438597/bay029.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay029/27438597/bay029.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031778115","display_name":"Alan McCulloch","orcid":null},"institutions":[{"id":"https://openalex.org/I41125697","display_name":"AgResearch","ror":"https://ror.org/0124gwh94","country_code":"NZ","type":"government","lineage":["https://openalex.org/I41125697","https://openalex.org/I4405260297"]}],"countries":["NZ"],"is_corresponding":true,"raw_author_name":"Alan F McCulloch","raw_affiliation_strings":["AgResearch, Invermay Agricultural Centre, Mosgiel, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AgResearch, Invermay Agricultural Centre, Mosgiel, New Zealand","institution_ids":["https://openalex.org/I41125697"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015518153","display_name":"Ruy J\u00e1uregui","orcid":"https://orcid.org/0000-0002-3484-8937"},"institutions":[{"id":"https://openalex.org/I41125697","display_name":"AgResearch","ror":"https://ror.org/0124gwh94","country_code":"NZ","type":"government","lineage":["https://openalex.org/I41125697","https://openalex.org/I4405260297"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Ruy Jauregui","raw_affiliation_strings":["AgResearch, Grasslands Research Centre, Palmerston North, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AgResearch, Grasslands Research Centre, Palmerston North, New Zealand","institution_ids":["https://openalex.org/I41125697"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082997561","display_name":"Paul Maclean","orcid":"https://orcid.org/0000-0001-8898-8276"},"institutions":[{"id":"https://openalex.org/I41125697","display_name":"AgResearch","ror":"https://ror.org/0124gwh94","country_code":"NZ","type":"government","lineage":["https://openalex.org/I41125697","https://openalex.org/I4405260297"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Paul H Maclean","raw_affiliation_strings":["AgResearch, Lincoln Research Centre, Christchurch, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AgResearch, Lincoln Research Centre, Christchurch, New Zealand","institution_ids":["https://openalex.org/I41125697"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045281781","display_name":"Rachael Ashby","orcid":"https://orcid.org/0000-0002-1938-3027"},"institutions":[{"id":"https://openalex.org/I41125697","display_name":"AgResearch","ror":"https://ror.org/0124gwh94","country_code":"NZ","type":"government","lineage":["https://openalex.org/I41125697","https://openalex.org/I4405260297"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Rachael L Ashby","raw_affiliation_strings":["AgResearch, Invermay Agricultural Centre, Mosgiel, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AgResearch, Invermay Agricultural Centre, Mosgiel, New Zealand","institution_ids":["https://openalex.org/I41125697"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019056306","display_name":"Roger Moraga","orcid":"https://orcid.org/0000-0001-7806-1135"},"institutions":[{"id":"https://openalex.org/I41125697","display_name":"AgResearch","ror":"https://ror.org/0124gwh94","country_code":"NZ","type":"government","lineage":["https://openalex.org/I41125697","https://openalex.org/I4405260297"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Roger A Moraga","raw_affiliation_strings":["AgResearch, Grasslands Research Centre, Palmerston North, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AgResearch, Grasslands Research Centre, Palmerston North, New Zealand","institution_ids":["https://openalex.org/I41125697"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032302491","display_name":"Aur\u00e9lie Laugraud","orcid":"https://orcid.org/0000-0002-5606-3428"},"institutions":[{"id":"https://openalex.org/I41125697","display_name":"AgResearch","ror":"https://ror.org/0124gwh94","country_code":"NZ","type":"government","lineage":["https://openalex.org/I41125697","https://openalex.org/I4405260297"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Aurelie Laugraud","raw_affiliation_strings":["AgResearch, Lincoln Research Centre, Christchurch, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AgResearch, Lincoln Research Centre, Christchurch, New Zealand","institution_ids":["https://openalex.org/I41125697"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030305018","display_name":"R\u00fcdiger Br\u00e4uning","orcid":"https://orcid.org/0000-0001-5068-9166"},"institutions":[{"id":"https://openalex.org/I41125697","display_name":"AgResearch","ror":"https://ror.org/0124gwh94","country_code":"NZ","type":"government","lineage":["https://openalex.org/I41125697","https://openalex.org/I4405260297"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Rudiger Brauning","raw_affiliation_strings":["AgResearch, Invermay Agricultural Centre, Mosgiel, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AgResearch, Invermay Agricultural Centre, Mosgiel, New Zealand","institution_ids":["https://openalex.org/I41125697"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058921217","display_name":"K. G. Dodds","orcid":"https://orcid.org/0000-0002-9347-6379"},"institutions":[{"id":"https://openalex.org/I41125697","display_name":"AgResearch","ror":"https://ror.org/0124gwh94","country_code":"NZ","type":"government","lineage":["https://openalex.org/I41125697","https://openalex.org/I4405260297"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Ken G Dodds","raw_affiliation_strings":["AgResearch, Invermay Agricultural Centre, Mosgiel, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AgResearch, Invermay Agricultural Centre, Mosgiel, New Zealand","institution_ids":["https://openalex.org/I41125697"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002736526","display_name":"John C. McEwan","orcid":"https://orcid.org/0000-0003-4801-6207"},"institutions":[{"id":"https://openalex.org/I41125697","display_name":"AgResearch","ror":"https://ror.org/0124gwh94","country_code":"NZ","type":"government","lineage":["https://openalex.org/I41125697","https://openalex.org/I4405260297"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"John C McEwan","raw_affiliation_strings":["AgResearch, Invermay Agricultural Centre, Mosgiel, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AgResearch, Invermay Agricultural Centre, Mosgiel, New Zealand","institution_ids":["https://openalex.org/I41125697"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5031778115"],"corresponding_institution_ids":["https://openalex.org/I41125697"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.0931,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.46727189,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"2018","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.836062490940094},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5464724898338318},{"id":"https://openalex.org/keywords/external-data-representation","display_name":"External Data Representation","score":0.5161791443824768},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4467217028141022},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4379972219467163},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3625119924545288},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33965328335762024},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3225543200969696}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.836062490940094},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5464724898338318},{"id":"https://openalex.org/C116409475","wikidata":"https://www.wikidata.org/wiki/Q1385056","display_name":"External Data Representation","level":2,"score":0.5161791443824768},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4467217028141022},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4379972219467163},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3625119924545288},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33965328335762024},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3225543200969696},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/bay029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay029","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay029/27438597/bay029.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:29688382","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29688382","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:4823659","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5887302","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/22738424","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/An_entropy-reducing_data_representation_approach_for_bioinformatic_data/22738424","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bay029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay029","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay029/27438597/bay029.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.8299999833106995}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309931","display_name":"AgResearch","ror":"https://ror.org/0124gwh94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2795434962.pdf","grobid_xml":"https://content.openalex.org/works/W2795434962.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W2055043387","https://openalex.org/W2110622871","https://openalex.org/W2140893882","https://openalex.org/W2159474015","https://openalex.org/W2174510006","https://openalex.org/W2544883878","https://openalex.org/W2549219766","https://openalex.org/W2915985519","https://openalex.org/W3145506661","https://openalex.org/W4206070770","https://openalex.org/W4230799834","https://openalex.org/W4251079740","https://openalex.org/W4396819889"],"related_works":["https://openalex.org/W2357241418","https://openalex.org/W2789919619","https://openalex.org/W2086064646","https://openalex.org/W2119135658","https://openalex.org/W2055387065","https://openalex.org/W2363235386","https://openalex.org/W1979539738","https://openalex.org/W1935423814","https://openalex.org/W2862718773","https://openalex.org/W1576701404"],"abstract_inverted_index":{"Database":[0],"URL:":[1],"https://github.com/AgResearch/data_prism.":[2]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2025-10-10T00:00:00"}
