{"id":"https://openalex.org/W4231083228","doi":"https://doi.org/10.1093/database/bay028","title":"TISSUES 2.0: an integrative web resource on mammalian tissue expression","display_name":"TISSUES 2.0: an integrative web resource on mammalian tissue expression","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W4231083228","doi":"https://doi.org/10.1093/database/bay028"},"language":"en","primary_location":{"id":"doi:10.1093/database/bay028","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay028","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"erratum","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/database/bay028","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054041780","display_name":"Oana Palasca","orcid":"https://orcid.org/0000-0002-8825-8465"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Oana Palasca","raw_affiliation_strings":["Center for non-coding RNA in Technology and Health, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark","Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark","Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for non-coding RNA in Technology and Health, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I124055696"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061383495","display_name":"Alberto Santos","orcid":"https://orcid.org/0000-0002-9163-7730"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Alberto Santos","raw_affiliation_strings":["Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I124055696"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006225456","display_name":"Christian Stolte","orcid":"https://orcid.org/0000-0002-8228-4195"},"institutions":[{"id":"https://openalex.org/I4210151462","display_name":"New York Genome Center","ror":"https://ror.org/05wf2ga96","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210151462"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christian Stolte","raw_affiliation_strings":["New York Genome Center, New York, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"New York Genome Center, New York, NY, USA","institution_ids":["https://openalex.org/I4210151462"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004614832","display_name":"Jan Gorodkin","orcid":"https://orcid.org/0000-0001-5823-4000"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"Jan Gorodkin","raw_affiliation_strings":["Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark","Center for non-coding RNA in Technology and Health, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Center for non-coding RNA in Technology and Health, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005772961","display_name":"Lars Juhl Jensen","orcid":"https://orcid.org/0000-0001-7885-715X"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"Lars Juhl Jensen","raw_affiliation_strings":["Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark","Center for non-coding RNA in Technology and Health, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I124055696"]},{"raw_affiliation_string":"Center for non-coding RNA in Technology and Health, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5004614832","https://openalex.org/A5005772961"],"corresponding_institution_ids":["https://openalex.org/I124055696","https://openalex.org/I2801134892"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":3.1538,"has_fulltext":false,"cited_by_count":61,"citation_normalized_percentile":{"value":0.92940108,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"2018","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9599999785423279,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.6408132314682007},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5885704755783081},{"id":"https://openalex.org/keywords/model-organism","display_name":"Model organism","score":0.5530993938446045},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4956299066543579},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.4653030037879944},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.410773366689682},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.38673973083496094},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3857038617134094},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.36536315083503723},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32383352518081665},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19557201862335205},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.18157535791397095},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.107516348361969}],"concepts":[{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.6408132314682007},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5885704755783081},{"id":"https://openalex.org/C19843653","wikidata":"https://www.wikidata.org/wiki/Q213907","display_name":"Model organism","level":3,"score":0.5530993938446045},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4956299066543579},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.4653030037879944},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.410773366689682},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.38673973083496094},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3857038617134094},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.36536315083503723},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32383352518081665},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19557201862335205},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.18157535791397095},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.107516348361969},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/database/bay028","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay028","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:4775458","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5855096","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bay028","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay028","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4223896405","https://openalex.org/W2059629050","https://openalex.org/W2074740504","https://openalex.org/W3013644380","https://openalex.org/W1996935079","https://openalex.org/W3210243923","https://openalex.org/W2145833061","https://openalex.org/W2258998699","https://openalex.org/W1998405066","https://openalex.org/W2171737904"],"abstract_inverted_index":{"Physiological":[0],"and":[1,42,69,82,88,108,137,155,158],"molecular":[2,48],"similarities":[3,41],"between":[4,44,152],"organisms":[5,45,179],"make":[6],"it":[7],"possible":[8],"to":[9,38,119],"translate":[10],"findings":[11],"from":[12,90],"simpler":[13],"experimental":[14],"systems\u2014model":[15],"organisms\u2014into":[16],"more":[17],"complex":[18],"ones,":[19],"such":[20],"as":[21,138],"human.":[22],"This":[23],"translation":[24],"facilitates":[25],"the":[26,40,47,91,112,122,141,150,161,167,170,175],"understanding":[27],"of":[28,62,75,106,121,140,169],"biological":[29],"processes":[30],"under":[31],"normal":[32],"or":[33,178],"disease":[34],"conditions.":[35],"Researchers":[36],"aiming":[37],"identify":[39],"differences":[43],"at":[46],"level":[49],"need":[50],"resources":[51],"collecting":[52],"multi-organism":[53],"tissue":[54],"expression":[55],"data.":[56],"We":[57],"have":[58],"developed":[59],"a":[60,95,115,133],"database":[61,126],"gene\u2013tissue":[63],"associations":[64,99],"in":[65],"human,":[66],"mouse,":[67],"rat":[68],"pig":[70],"by":[71,166,174],"integrating":[72],"multiple":[73],"sources":[74,105],"evidence:":[76],"transcriptomics":[77],"covering":[78],"all":[79,104],"four":[80],"species":[81],"proteomics":[83],"(human":[84],"only),":[85],"manually":[86],"curated":[87],"mined":[89],"scientific":[92],"literature.":[93],"Through":[94],"scoring":[96,113],"scheme,":[97],"these":[98],"are":[100],"made":[101],"comparable":[102],"across":[103,109,154],"evidence":[107],"organisms.":[110],"Furthermore,":[111],"produces":[114],"confidence":[116],"score":[117],"assigned":[118],"each":[120],"associations.":[123],"The":[124],"TISSUES":[125],"(version":[127],"2.0)":[128],"is":[129,163],"publicly":[130],"accessible":[131],"through":[132],"user-friendly":[134],"web":[135],"interface":[136],"part":[139],"STRING":[142],"app":[143],"for":[144],"Cytoscape.":[145],"In":[146],"addition,":[147],"we":[148],"analyzed":[149],"agreement":[151,162],"datasets,":[153],"within":[156],"organisms,":[157],"identified":[159],"that":[160],"mainly":[164],"affected":[165],"quality":[168],"datasets":[171],"rather":[172],"than":[173],"technologies":[176],"used":[177],"compared.":[180],"Database":[181],"URL:":[182],"http://tissues.jensenlab.org/":[183]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":23},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1}],"updated_date":"2026-05-19T08:33:51.333923","created_date":"2025-10-10T00:00:00"}
