{"id":"https://openalex.org/W2951403620","doi":"https://doi.org/10.1093/database/bay019","title":"GEOMetaCuration: a web-based application for accurate manual curation of Gene Expression Omnibus metadata","display_name":"GEOMetaCuration: a web-based application for accurate manual curation of Gene Expression Omnibus metadata","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2951403620","doi":"https://doi.org/10.1093/database/bay019","mag":"2951403620","pmid":"https://pubmed.ncbi.nlm.nih.gov/29688376"},"language":"en","primary_location":{"id":"doi:10.1093/database/bay019","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay019","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay019/27438520/bay019.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay019/27438520/bay019.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102933302","display_name":"Li Zhao","orcid":"https://orcid.org/0000-0002-9873-8745"},"institutions":[{"id":"https://openalex.org/I173268674","display_name":"Texas A&M University System","ror":"https://ror.org/0034eay46","country_code":"US","type":"education","lineage":["https://openalex.org/I173268674"]},{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhao Li","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, USA","TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering, Texas A&M University, College Station, TX 77843, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, USA","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering, Texas A&M University, College Station, TX 77843, USA","institution_ids":["https://openalex.org/I173268674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023173849","display_name":"Li Jin","orcid":"https://orcid.org/0000-0002-7898-8405"},"institutions":[{"id":"https://openalex.org/I173268674","display_name":"Texas A&M University System","ror":"https://ror.org/0034eay46","country_code":"US","type":"education","lineage":["https://openalex.org/I173268674"]},{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jin Li","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, USA","TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering, Texas A&M University, College Station, TX 77843, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, USA","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering, Texas A&M University, College Station, TX 77843, USA","institution_ids":["https://openalex.org/I173268674"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004456961","display_name":"Peng Yu","orcid":"https://orcid.org/0000-0002-3948-3340"},"institutions":[{"id":"https://openalex.org/I173268674","display_name":"Texas A&M University System","ror":"https://ror.org/0034eay46","country_code":"US","type":"education","lineage":["https://openalex.org/I173268674"]},{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Peng Yu","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, USA","TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering, Texas A&M University, College Station, TX 77843, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, USA","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering, Texas A&M University, College Station, TX 77843, USA","institution_ids":["https://openalex.org/I173268674"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5004456961"],"corresponding_institution_ids":["https://openalex.org/I173268674","https://openalex.org/I91045830"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.9071,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.73777186,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":98},"biblio":{"volume":"2018","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.8774056434631348},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.8296640515327454},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.731410026550293},{"id":"https://openalex.org/keywords/digital-curation","display_name":"Digital curation","score":0.7193418741226196},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6625604629516602},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6044994592666626},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.41383475065231323},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.37219494581222534},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.354521244764328}],"concepts":[{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.8774056434631348},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.8296640515327454},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.731410026550293},{"id":"https://openalex.org/C2775953033","wikidata":"https://www.wikidata.org/wiki/Q5276060","display_name":"Digital curation","level":2,"score":0.7193418741226196},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6625604629516602},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6044994592666626},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.41383475065231323},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.37219494581222534},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.354521244764328},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bay019","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay019","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay019/27438520/bay019.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:29688376","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29688376","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5868185","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5868185","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bay019","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bay019","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bay019/27438520/bay019.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2951403620.pdf","grobid_xml":"https://content.openalex.org/works/W2951403620.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1544857814","https://openalex.org/W1865161519","https://openalex.org/W2091940856","https://openalex.org/W2096525273","https://openalex.org/W2118055379","https://openalex.org/W2118258530","https://openalex.org/W2166676212","https://openalex.org/W2613784755","https://openalex.org/W2949612967","https://openalex.org/W2952174148","https://openalex.org/W2952849455","https://openalex.org/W4251386234"],"related_works":["https://openalex.org/W2400390830","https://openalex.org/W2598248896","https://openalex.org/W2907605431","https://openalex.org/W842882028","https://openalex.org/W2138555252","https://openalex.org/W2807479512","https://openalex.org/W2277259138","https://openalex.org/W3200944274","https://openalex.org/W3135458263","https://openalex.org/W4231012597"],"abstract_inverted_index":{"Abstract:":[0],"Metadata":[1],"curation":[2,35,55,61,69,85],"has":[3],"become":[4],"increasingly":[5],"important":[6],"for":[7,38],"biological":[8,19,130,134],"discovery":[9],"and":[10,57,88,105,123],"biomedical":[11],"research":[12],"because":[13],"a":[14,83,89,97],"large":[15],"amount":[16],"of":[17,42,103,129],"heterogeneous":[18],"data":[20],"is":[21,94,106,116],"currently":[22],"freely":[23],"available.":[24],"To":[25],"facilitate":[26],"efficient":[27],"metadata":[28,41,79],"curation,":[29,80],"we":[30],"developed":[31],"an":[32],"easy-to-use":[33],"web-based":[34],"application,":[36],"GEOMetaCuration,":[37],"curating":[39],"the":[40,68,109,120,144],"Gene":[43],"Expression":[44],"Omnibus":[45],"datasets.":[46],"It":[47,66],"can":[48,58,140],"eliminate":[49],"mechanical":[50],"operations":[51],"that":[52,75],"consume":[53],"precious":[54],"time":[56],"help":[59],"coordinate":[60],"efforts":[62],"among":[63],"multiple":[64],"curators.":[65],"improves":[67],"process":[70],"by":[71],"introducing":[72],"various":[73],"features":[74],"are":[76],"critical":[77],"to":[78,118,124,126],"such":[81],"as":[82],"back-end":[84],"management":[86],"system":[87],"curator-friendly":[90],"front-end.":[91],"The":[92],"application":[93],"based":[95],"on":[96],"commonly":[98],"used":[99],"web":[100],"development":[101],"framework":[102],"Python/Django":[104],"open-sourced":[107],"under":[108],"GNU":[110],"General":[111],"Public":[112],"License":[113],"V3.":[114],"GEOMetaCuration":[115],"expected":[117],"benefit":[119],"biocuration":[121],"community":[122],"contribute":[125],"computational":[127],"generation":[128],"insights":[131],"using":[132],"large-scale":[133],"data.":[135],"An":[136],"example":[137],"use":[138],"case":[139],"be":[141],"found":[142],"at":[143],"demo":[145],"website:":[146],"http://geometacuration.yubiolab.org.":[147],"Database":[148],"URL:":[149],"https://bitbucket.com/yubiolab/GEOMetaCuration":[150]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2018,"cited_by_count":5}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
