{"id":"https://openalex.org/W2793529215","doi":"https://doi.org/10.1093/database/bax106","title":"FishTEDB: a collective database of transposable elements identified in the complete genomes of fish","display_name":"FishTEDB: a collective database of transposable elements identified in the complete genomes of fish","publication_year":2017,"publication_date":"2017-12-23","ids":{"openalex":"https://openalex.org/W2793529215","doi":"https://doi.org/10.1093/database/bax106","mag":"2793529215","pmid":"https://pubmed.ncbi.nlm.nih.gov/29688350"},"language":"en","primary_location":{"id":"doi:10.1093/database/bax106","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax106","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax106/27438220/bax106.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax106/27438220/bax106.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025569562","display_name":"Feng Shao","orcid":"https://orcid.org/0000-0002-4648-2493"},"institutions":[{"id":"https://openalex.org/I142108993","display_name":"Southwest University","ror":"https://ror.org/01kj4z117","country_code":"CN","type":"education","lineage":["https://openalex.org/I142108993"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Feng Shao","raw_affiliation_strings":["Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Southwest University School of Life Sciences, Chongqing 400715, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Southwest University School of Life Sciences, Chongqing 400715, China","institution_ids":["https://openalex.org/I142108993"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102003659","display_name":"Jianrong Wang","orcid":"https://orcid.org/0000-0002-9290-4888"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jianrong Wang","raw_affiliation_strings":["Department of Computational Mathematics, Science and Engineering, Michigan State University, MI 48824, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Mathematics, Science and Engineering, Michigan State University, MI 48824, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079151729","display_name":"Hongen Xu","orcid":"https://orcid.org/0000-0001-7895-0899"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hongen Xu","raw_affiliation_strings":["Department of Genome Oriented Bioinformatics Wissenschaftszentrum Weihenstephan, TU Muenchen Maximus-von-Imhof-Forum 3, Freising 85354, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genome Oriented Bioinformatics Wissenschaftszentrum Weihenstephan, TU Muenchen Maximus-von-Imhof-Forum 3, Freising 85354, Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047330202","display_name":"Zuogang Peng","orcid":"https://orcid.org/0000-0001-8810-2025"},"institutions":[{"id":"https://openalex.org/I142108993","display_name":"Southwest University","ror":"https://ror.org/01kj4z117","country_code":"CN","type":"education","lineage":["https://openalex.org/I142108993"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zuogang Peng","raw_affiliation_strings":["Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Southwest University School of Life Sciences, Chongqing 400715, China"],"raw_orcid":"https://orcid.org/0000-0001-8810-2025","affiliations":[{"raw_affiliation_string":"Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Southwest University School of Life Sciences, Chongqing 400715, China","institution_ids":["https://openalex.org/I142108993"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5047330202"],"corresponding_institution_ids":["https://openalex.org/I142108993"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":8.6229,"has_fulltext":true,"cited_by_count":56,"citation_normalized_percentile":{"value":0.96990736,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"2018","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9605000019073486,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transposable-element","display_name":"Transposable element","score":0.856619119644165},{"id":"https://openalex.org/keywords/fish-actinopterygii","display_name":"Fish <Actinopterygii>","score":0.714743971824646},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6787816286087036},{"id":"https://openalex.org/keywords/dna-transposable-elements","display_name":"DNA Transposable Elements","score":0.5357407927513123},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5305049419403076},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.387191504240036},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3617889881134033},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33748623728752136},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2783977687358856},{"id":"https://openalex.org/keywords/fishery","display_name":"Fishery","score":0.1285766065120697},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09941774606704712}],"concepts":[{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.856619119644165},{"id":"https://openalex.org/C2909208804","wikidata":"https://www.wikidata.org/wiki/Q127282","display_name":"Fish <Actinopterygii>","level":2,"score":0.714743971824646},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6787816286087036},{"id":"https://openalex.org/C2910146623","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"DNA Transposable Elements","level":5,"score":0.5357407927513123},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5305049419403076},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.387191504240036},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3617889881134033},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33748623728752136},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2783977687358856},{"id":"https://openalex.org/C505870484","wikidata":"https://www.wikidata.org/wiki/Q180538","display_name":"Fishery","level":1,"score":0.1285766065120697},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09941774606704712}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005399","descriptor_name":"Fishes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005399","descriptor_name":"Fishes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005399","descriptor_name":"Fishes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064175","descriptor_name":"Lancelets","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064175","descriptor_name":"Lancelets","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064175","descriptor_name":"Lancelets","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/bax106","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax106","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax106/27438220/bax106.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:29688350","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29688350","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:5397617","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6404401","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6404401","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6404401","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bax106","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax106","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax106/27438220/bax106.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"display_name":"Life below water","id":"https://metadata.un.org/sdg/14"}],"awards":[{"id":"https://openalex.org/G117704328","display_name":null,"funder_award_id":"XDJK2015A011","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G5041728698","display_name":null,"funder_award_id":"31572254","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8224783551","display_name":null,"funder_award_id":"31272283","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320310016","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320332431","display_name":"College of Engineering, Michigan State University","ror":"https://ror.org/05hs6h993"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2793529215.pdf","grobid_xml":"https://content.openalex.org/works/W2793529215.grobid-xml"},"referenced_works_count":88,"referenced_works":["https://openalex.org/W598720872","https://openalex.org/W1413417492","https://openalex.org/W1963630241","https://openalex.org/W1967297336","https://openalex.org/W1973938885","https://openalex.org/W1980577355","https://openalex.org/W1981239255","https://openalex.org/W1996423252","https://openalex.org/W2002824100","https://openalex.org/W2003144438","https://openalex.org/W2042086471","https://openalex.org/W2044692947","https://openalex.org/W2050878024","https://openalex.org/W2053555525","https://openalex.org/W2059805279","https://openalex.org/W2059864757","https://openalex.org/W2071501400","https://openalex.org/W2071506601","https://openalex.org/W2076092946","https://openalex.org/W2076656039","https://openalex.org/W2092026879","https://openalex.org/W2094913043","https://openalex.org/W2097606916","https://openalex.org/W2108230379","https://openalex.org/W2121332208","https://openalex.org/W2125107638","https://openalex.org/W2132141594","https://openalex.org/W2135356895","https://openalex.org/W2135621733","https://openalex.org/W2144268209","https://openalex.org/W2149429041","https://openalex.org/W2151899848","https://openalex.org/W2152222332","https://openalex.org/W2154035365","https://openalex.org/W2155308032","https://openalex.org/W2158714788","https://openalex.org/W2163960662","https://openalex.org/W2224056471","https://openalex.org/W2263391408","https://openalex.org/W2281161130","https://openalex.org/W2413271074","https://openalex.org/W2509161766","https://openalex.org/W2556763090","https://openalex.org/W4239620712","https://openalex.org/W4242574543","https://openalex.org/W4243749589","https://openalex.org/W4251310281","https://openalex.org/W6628392369","https://openalex.org/W6641057018","https://openalex.org/W6641937647","https://openalex.org/W6643702495","https://openalex.org/W6645391137","https://openalex.org/W6645397420","https://openalex.org/W6649447075","https://openalex.org/W6651006952","https://openalex.org/W6651013156","https://openalex.org/W6660969497","https://openalex.org/W6661534659","https://openalex.org/W6663854742","https://openalex.org/W6665115676","https://openalex.org/W6665444975","https://openalex.org/W6668324091","https://openalex.org/W6668461711","https://openalex.org/W6669750145","https://openalex.org/W6669884751","https://openalex.org/W6673364101","https://openalex.org/W6674151196","https://openalex.org/W6674784443","https://openalex.org/W6676405034","https://openalex.org/W6678405374","https://openalex.org/W6678432880","https://openalex.org/W6679740103","https://openalex.org/W6679889706","https://openalex.org/W6680176975","https://openalex.org/W6681216429","https://openalex.org/W6681976505","https://openalex.org/W6682517984","https://openalex.org/W6682591017","https://openalex.org/W6682594098","https://openalex.org/W6683057471","https://openalex.org/W6683179228","https://openalex.org/W6684237001","https://openalex.org/W6689099039","https://openalex.org/W6693114971","https://openalex.org/W6695579237","https://openalex.org/W6725422904","https://openalex.org/W6730548704","https://openalex.org/W6824248696"],"related_works":["https://openalex.org/W2053969879","https://openalex.org/W2082641564","https://openalex.org/W2107333779","https://openalex.org/W3108190435","https://openalex.org/W1964419640","https://openalex.org/W1831405499","https://openalex.org/W4237623655","https://openalex.org/W4385457713","https://openalex.org/W2164152191","https://openalex.org/W2790772971"],"abstract_inverted_index":{"Database":[0],"URL:":[1],"http://www.fishtedb.org/.":[2]},"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":3}],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2025-10-10T00:00:00"}
