{"id":"https://openalex.org/W2792556718","doi":"https://doi.org/10.1093/database/bax103","title":"Baseline and extensions approach to information retrieval of complex medical data: Poznan's approach to the bioCADDIE 2016","display_name":"Baseline and extensions approach to information retrieval of complex medical data: Poznan's approach to the bioCADDIE 2016","publication_year":2017,"publication_date":"2017-12-22","ids":{"openalex":"https://openalex.org/W2792556718","doi":"https://doi.org/10.1093/database/bax103","mag":"2792556718","pmid":"https://pubmed.ncbi.nlm.nih.gov/29688372"},"language":"en","primary_location":{"id":"doi:10.1093/database/bax103","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax103","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax103/27438588/bax103.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax103/27438588/bax103.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049262433","display_name":"Artur Cie\u015blewicz","orcid":"https://orcid.org/0000-0001-9918-5989"},"institutions":[{"id":"https://openalex.org/I120230055","display_name":"Poznan University of Medical Sciences","ror":"https://ror.org/02zbb2597","country_code":"PL","type":"education","lineage":["https://openalex.org/I120230055"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Artur Cieslewicz","raw_affiliation_strings":["Department of Clinical Pharmacology, Poznan University of Medical Sciences, Dluga 1/2 Str., 61-848 Poznan, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Pharmacology, Poznan University of Medical Sciences, Dluga 1/2 Str., 61-848 Poznan, Poland","institution_ids":["https://openalex.org/I120230055"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015925998","display_name":"Jakub Dutkiewicz","orcid":"https://orcid.org/0000-0002-7954-7484"},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Jakub Dutkiewicz","raw_affiliation_strings":["Institute of Control, Robotics and Information Engineering, Poznan University of Technology, ul. Piotrowo 3a, 60-965 Pozna\u0144, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Control, Robotics and Information Engineering, Poznan University of Technology, ul. Piotrowo 3a, 60-965 Pozna\u0144, Poland","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021816636","display_name":"Czes\u0142aw J\u0119drzejek","orcid":"https://orcid.org/0000-0002-9593-6818"},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Czeslaw Jedrzejek","raw_affiliation_strings":["Institute of Control, Robotics and Information Engineering, Poznan University of Technology, ul. Piotrowo 3a, 60-965 Pozna\u0144, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Control, Robotics and Information Engineering, Poznan University of Technology, ul. Piotrowo 3a, 60-965 Pozna\u0144, Poland","institution_ids":["https://openalex.org/I46597724"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5021816636"],"corresponding_institution_ids":["https://openalex.org/I46597724"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.5078,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.64379039,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"2018","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/baseline","display_name":"Baseline (sea)","score":0.8594321012496948},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7790921330451965},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.66352778673172},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6630457639694214},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.34467238187789917},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.33647647500038147},{"id":"https://openalex.org/keywords/library-science","display_name":"Library science","score":0.3326835632324219},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.08484700322151184},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.08185231685638428}],"concepts":[{"id":"https://openalex.org/C12725497","wikidata":"https://www.wikidata.org/wiki/Q810247","display_name":"Baseline (sea)","level":2,"score":0.8594321012496948},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7790921330451965},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.66352778673172},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6630457639694214},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34467238187789917},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.33647647500038147},{"id":"https://openalex.org/C161191863","wikidata":"https://www.wikidata.org/wiki/Q199655","display_name":"Library science","level":1,"score":0.3326835632324219},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.08484700322151184},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.08185231685638428},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011044","descriptor_name":"Poland","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011044","descriptor_name":"Poland","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011044","descriptor_name":"Poland","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011044","descriptor_name":"Poland","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bax103","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax103","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax103/27438588/bax103.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:29688372","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29688372","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5846287","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5846287","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bax103","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax103","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax103/27438588/bax103.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2286410554","display_name":"BioCADDIE: Biomedical and healthCAre Data Discovery and Indexing Engine center","funder_award_id":"3u24ai117966-03s1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G319463894","display_name":null,"funder_award_id":"U24AI117966","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G5050824123","display_name":null,"funder_award_id":"U24AI117966","funder_id":"https://openalex.org/F4320306080","funder_display_name":"Foundation for the National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306080","display_name":"Foundation for the National Institutes of Health","ror":"https://ror.org/00k86s890"},{"id":"https://openalex.org/F4320322481","display_name":"Politechnika Pozna\u0144ska","ror":"https://ror.org/00p7p3302"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2792556718.pdf","grobid_xml":"https://content.openalex.org/works/W2792556718.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W971231729","https://openalex.org/W1557757161","https://openalex.org/W1579504521","https://openalex.org/W1928047241","https://openalex.org/W1993692165","https://openalex.org/W2105157020","https://openalex.org/W2123668032","https://openalex.org/W2124458984","https://openalex.org/W2428528690","https://openalex.org/W2522443079","https://openalex.org/W2558960030","https://openalex.org/W2597601064","https://openalex.org/W2613589950","https://openalex.org/W2774661587","https://openalex.org/W2785664611","https://openalex.org/W2786146603","https://openalex.org/W2786484491","https://openalex.org/W2787159537","https://openalex.org/W2919960343","https://openalex.org/W2950031835","https://openalex.org/W2964023798","https://openalex.org/W3022021110","https://openalex.org/W4302433649","https://openalex.org/W6737763821","https://openalex.org/W6744533648","https://openalex.org/W6776527272"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2378211422","https://openalex.org/W2383111961","https://openalex.org/W2365952365","https://openalex.org/W2352448290","https://openalex.org/W2380820513","https://openalex.org/W4321353415","https://openalex.org/W2913146933","https://openalex.org/W2745001401","https://openalex.org/W2372385138"],"abstract_inverted_index":{"Information":[0],"retrieval":[1,31,45,71,157],"from":[2,72,80],"biomedical":[3,82],"repositories":[4],"has":[5],"become":[6],"a":[7,60,73,98,151],"challenging":[8],"task":[9,67],"because":[10],"of":[11,51,56,75,146,174],"their":[12],"increasing":[13],"size":[14],"and":[15,53,110,121,138],"complexity.":[16],"To":[17],"facilitate":[18],"the":[19,24,41,63,91,127,135,155,172],"research":[20],"aimed":[21],"at":[22],"improving":[23,175],"search":[25,94],"for":[26,119,187],"relevant":[27],"documents,":[28],"various":[29],"information":[30,44,70,156],"challenges":[32],"have":[33],"been":[34],"launched.":[35],"In":[36],"this":[37],"article,":[38],"we":[39],"present":[40],"improved":[42],"medical":[43],"systems":[46],"designed":[47],"by":[48,87,97,178],"Poznan":[49,54],"University":[50,55],"Technology":[52],"Medical":[57],"Sciences":[58],"as":[59],"contribution":[61],"to":[62,115,154,184],"bioCADDIE":[64,168],"2016":[65],"challenge-a":[66],"focusing":[68],"on":[69,163],"collection":[74],"794":[76],"992":[77],"datasets":[78],"generated":[79],"20":[81],"repositories.":[83],"The":[84],"system":[85],"developed":[86],"our":[88,176],"team":[89],"utilizes":[90],"Terrier":[92],"4.2":[93],"platform":[95],"enhanced":[96],"query":[99,188],"expansion":[100],"method":[101],"using":[102,179],"word":[103,147,181],"embeddings.":[104],"This":[105,141],"approach,":[106],"after":[107],"post-challenge":[108],"modifications":[109],"improvements":[111],"(with":[112],"particular":[113],"regard":[114],"assigning":[116],"proper":[117,144],"weights":[118],"original":[120],"expanded":[122],"terms),":[123],"allowed":[124],"us":[125],"achieving":[126],"second":[128],"best":[129],"infNDCG":[130],"measure":[131],"(0.4539)":[132],"compared":[133],"with":[134],"challenge":[136],"results":[137,177],"infAP":[139],"0.3978.":[140],"demonstrates":[142],"that":[143],"utilization":[145],"embeddings":[148],"can":[149],"be":[150],"valuable":[152],"addition":[153],"process.":[158],"Some":[159],"analysis":[160],"is":[161],"provided":[162],"related":[164],"work":[165],"involving":[166],"other":[167],"contributions.":[169],"We":[170],"discuss":[171],"possibility":[173],"better":[180],"embedding":[182],"schemes":[183],"find":[185],"candidates":[186],"expansion.":[189]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2018,"cited_by_count":1}],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2025-10-10T00:00:00"}
