{"id":"https://openalex.org/W2787247269","doi":"https://doi.org/10.1093/database/bax081","title":"eGenPub, a text mining system for extending computationally mapped bibliography for UniProt Knowledgebase by capturing centrality","display_name":"eGenPub, a text mining system for extending computationally mapped bibliography for UniProt Knowledgebase by capturing centrality","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2787247269","doi":"https://doi.org/10.1093/database/bax081","mag":"2787247269","pmid":"https://pubmed.ncbi.nlm.nih.gov/29220476"},"language":"en","primary_location":{"id":"doi:10.1093/database/bax081","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax081","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax081/21744240/bax081.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax081/21744240/bax081.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077430951","display_name":"Ruoyao Ding","orcid":"https://orcid.org/0000-0001-9282-7846"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ruoyao Ding","raw_affiliation_strings":["Department of Computer and Information Science, University of Delaware, Newark, DE 19716, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, University of Delaware, Newark, DE 19716, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040201934","display_name":"Emmanuel Boutet","orcid":"https://orcid.org/0000-0002-3743-4203"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Emmanuel Boutet","raw_affiliation_strings":["Swiss Institute of Bioinformatics, Centre Medical Universitaire, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Centre Medical Universitaire, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070436721","display_name":"Damien Lieberherr","orcid":"https://orcid.org/0000-0002-9724-1710"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Damien Lieberherr","raw_affiliation_strings":["Swiss Institute of Bioinformatics, Centre Medical Universitaire, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Centre Medical Universitaire, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038430255","display_name":"Michel Schneider","orcid":"https://orcid.org/0000-0002-2701-4731"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Michel Schneider","raw_affiliation_strings":["Swiss Institute of Bioinformatics, Centre Medical Universitaire, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Centre Medical Universitaire, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010469229","display_name":"Michael Tognolli","orcid":"https://orcid.org/0000-0002-5278-3321"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Michael Tognolli","raw_affiliation_strings":["Swiss Institute of Bioinformatics, Centre Medical Universitaire, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Centre Medical Universitaire, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053761444","display_name":"Cathy Wu","orcid":"https://orcid.org/0000-0001-6379-8601"},"institutions":[{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cathy H Wu","raw_affiliation_strings":["Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19716, USA","Department of Computer and Information Science, University of Delaware, Newark, DE 19716, USA","Protein Information Resource, University of Delaware, Newark, DE 19716 and Georgetown University, Washington, DC 20007, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19716, USA","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Computer and Information Science, University of Delaware, Newark, DE 19716, USA","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Protein Information Resource, University of Delaware, Newark, DE 19716 and Georgetown University, Washington, DC 20007, USA","institution_ids":["https://openalex.org/I184565670","https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027009667","display_name":"K. Vijay\u2010Shanker","orcid":"https://orcid.org/0000-0003-0958-3073"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"K Vijay-Shanker","raw_affiliation_strings":["Department of Computer and Information Science, University of Delaware, Newark, DE 19716, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, University of Delaware, Newark, DE 19716, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001355963","display_name":"Cecilia N. Arighi","orcid":"https://orcid.org/0000-0002-0803-4817"},"institutions":[{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Cecilia N Arighi","raw_affiliation_strings":["Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19716, USA","Department of Computer and Information Science, University of Delaware, Newark, DE 19716, USA","Protein Information Resource, University of Delaware, Newark, DE 19716 and Georgetown University, Washington, DC 20007, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19716, USA","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Computer and Information Science, University of Delaware, Newark, DE 19716, USA","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Protein Information Resource, University of Delaware, Newark, DE 19716 and Georgetown University, Washington, DC 20007, USA","institution_ids":["https://openalex.org/I184565670","https://openalex.org/I86501945"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5001355963"],"corresponding_institution_ids":["https://openalex.org/I184565670","https://openalex.org/I86501945"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.1505,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.85216197,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"2017","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9685999751091003,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9685999751091003,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9624999761581421,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.878699779510498},{"id":"https://openalex.org/keywords/centrality","display_name":"Centrality","score":0.8439675569534302},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7244651317596436},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6496259570121765},{"id":"https://openalex.org/keywords/bibliography","display_name":"Bibliography","score":0.5906648635864258},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4732663631439209},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.41477084159851074},{"id":"https://openalex.org/keywords/library-science","display_name":"Library science","score":0.34151625633239746},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08324563503265381}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.878699779510498},{"id":"https://openalex.org/C53811970","wikidata":"https://www.wikidata.org/wiki/Q5062194","display_name":"Centrality","level":2,"score":0.8439675569534302},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7244651317596436},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6496259570121765},{"id":"https://openalex.org/C97002063","wikidata":"https://www.wikidata.org/wiki/Q134995","display_name":"Bibliography","level":2,"score":0.5906648635864258},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4732663631439209},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.41477084159851074},{"id":"https://openalex.org/C161191863","wikidata":"https://www.wikidata.org/wiki/Q199655","display_name":"Library science","level":1,"score":0.34151625633239746},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08324563503265381},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bax081","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax081","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax081/21744240/bax081.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:29220476","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29220476","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5691349","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5691349","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bax081","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax081","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax081/21744240/bax081.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1311907592","display_name":null,"funder_award_id":"U01GM120953","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2484568323","display_name":null,"funder_award_id":"DE-INBRE P20GM103446","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3512532217","display_name":null,"funder_award_id":"R13 GM109648","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G393447075","display_name":null,"funder_award_id":"INBRE P20GM103446","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4629778535","display_name":null,"funder_award_id":"P20 GM103446","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4750929100","display_name":null,"funder_award_id":"U41 HG007822","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G4971142927","display_name":null,"funder_award_id":"U41HG007822","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7087278804","display_name":null,"funder_award_id":"U01 GM120953","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G785190151","display_name":null,"funder_award_id":"P20GM103446","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2787247269.pdf","grobid_xml":"https://content.openalex.org/works/W2787247269.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1610821757","https://openalex.org/W1964670939","https://openalex.org/W1987962959","https://openalex.org/W2022484638","https://openalex.org/W2060942759","https://openalex.org/W2071925258","https://openalex.org/W2096525273","https://openalex.org/W2096536772","https://openalex.org/W2103513327","https://openalex.org/W2125004669","https://openalex.org/W2129800387","https://openalex.org/W2135230723","https://openalex.org/W2154110613","https://openalex.org/W2154139219","https://openalex.org/W2165253681","https://openalex.org/W2166339213","https://openalex.org/W2179282661","https://openalex.org/W2207474836","https://openalex.org/W2319263628","https://openalex.org/W2432508461","https://openalex.org/W2472351724","https://openalex.org/W2557403953","https://openalex.org/W2583109918","https://openalex.org/W2952894920","https://openalex.org/W4210702584","https://openalex.org/W4251386234","https://openalex.org/W6665562510","https://openalex.org/W6674531130"],"related_works":["https://openalex.org/W24553703","https://openalex.org/W4211000692","https://openalex.org/W4212920271","https://openalex.org/W2612240612","https://openalex.org/W4211208250","https://openalex.org/W4211054902","https://openalex.org/W4324018414","https://openalex.org/W2170381940","https://openalex.org/W2472351724","https://openalex.org/W3145366215"],"abstract_inverted_index":{"UniProt":[0,32,75,119,145,172],"Knowledgebase":[1],"(UniProtKB)":[2],"is":[3,167],"a":[4,11,29,53,85,92,100,117,124],"publicly":[5],"available":[6],"database":[7],"with":[8,28],"access":[9],"to":[10,104,116],"vast":[12],"amount":[13],"of":[14,24,70,102],"protein":[15,30,76,182],"sequence":[16],"and":[17,66,91,175],"functional":[18],"information.":[19],"To":[20],"widen":[21],"the":[22,25,35,155,171,180],"scope":[23],"publications":[26],"associated":[27],"entry,":[31],"has":[33],"introduced":[34],"computationally":[36,161],"mapped":[37,162],"additional":[38,71,151,163],"bibliography":[39,72,142,164],"section,":[40],"which":[41,58,98,148],"includes":[42],"literature":[43],"collected":[44],"from":[45],"external":[46],"sources.":[47],"In":[48],"this":[49],"article,":[50,108],"we":[51],"describe":[52],"text":[54],"mining":[55],"system,":[56],"eGenPub,":[57],"selects":[59],"articles":[60,137],"that":[61],"are":[62,138,150],"'about'":[63],"specific":[64],"proteins":[65,81],"allows":[67],"automatic":[68],"identification":[69],"for":[73,130,143],"given":[74,118],"entries.":[77],"Focusing":[78],"on":[79,110],"plant":[80,133],"initially,":[82],"eGenPub":[83,129,166],"utilizes":[84],"gene":[86],"normalization":[87],"tool":[88],"called":[89],"pGenN,":[90],"trained":[93],"support":[94],"vector":[95],"machine":[96],"model,":[97],"achieves":[99],"precision":[101],"95.3%,":[103],"predict":[105],"whether":[106],"an":[107],"based":[109],"its":[111],"abstract,":[112],"should":[113],"be":[114,177],"linked":[115],"entry.":[120],"We":[121],"have":[122],"conducted":[123],"full-scale":[125],"PubMed":[126],"processing":[127],"using":[128],"eight":[131],"common":[132],"species.":[134],"Altogether,":[135],"9025":[136],"identified":[139],"as":[140],"relevant":[141],"4752":[144],"entries,":[146],"among":[147],"5252":[149],"papers":[152],"not":[153],"in":[154,170],"existing":[156],"publication":[157,184],"section.":[158],"These":[159],"newly":[160],"via":[165,179],"being":[168],"integrated":[169],"production":[173],"pipeline,":[174],"can":[176],"accessed":[178],"UniProtKB":[181],"entry":[183],"view.":[185]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
