{"id":"https://openalex.org/W2786128248","doi":"https://doi.org/10.1093/database/bax072","title":"Improving taxonomic accuracy for fungi in public sequence databases: applying \u2018one name one species\u2019 in well-defined genera with Trichoderma/Hypocrea as a test case","display_name":"Improving taxonomic accuracy for fungi in public sequence databases: applying \u2018one name one species\u2019 in well-defined genera with Trichoderma/Hypocrea as a test case","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2786128248","doi":"https://doi.org/10.1093/database/bax072","mag":"2786128248","pmid":"https://pubmed.ncbi.nlm.nih.gov/29220466"},"language":"en","primary_location":{"id":"doi:10.1093/database/bax072","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax072","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax072/21295438/bax072.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax072/21295438/bax072.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003319402","display_name":"Barbara Robbertse","orcid":"https://orcid.org/0000-0002-0264-0955"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Barbara Robbertse","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892, USA"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079334712","display_name":"Pooja K Strope","orcid":null},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pooja K Strope","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892, USA"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014550133","display_name":"Priscila Chaverr\u00ed","orcid":"https://orcid.org/0000-0002-8486-6033"},"institutions":[{"id":"https://openalex.org/I31944674","display_name":"Universidad de Costa Rica","ror":"https://ror.org/02yzgww51","country_code":"CR","type":"education","lineage":["https://openalex.org/I31944674"]},{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["CR","US"],"is_corresponding":false,"raw_author_name":"Priscila Chaverri","raw_affiliation_strings":["Department of Plant Science and Landscape Architecture, University of Maryland, College Park, MD 20742, USA","Escuela de Biolog\u00eda, Universidad de Costa Rica, San Pedro, San Jos\u00e9, Costa Rica"],"affiliations":[{"raw_affiliation_string":"Department of Plant Science and Landscape Architecture, University of Maryland, College Park, MD 20742, USA","institution_ids":["https://openalex.org/I66946132"]},{"raw_affiliation_string":"Escuela de Biolog\u00eda, Universidad de Costa Rica, San Pedro, San Jos\u00e9, Costa Rica","institution_ids":["https://openalex.org/I31944674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073897867","display_name":"Romina Gazis","orcid":"https://orcid.org/0000-0002-7979-176X"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Romina Gazis","raw_affiliation_strings":["Department of Entomology & Plant Pathology, University of Tennessee, Knoxville, TN 37996, USA"],"affiliations":[{"raw_affiliation_string":"Department of Entomology & Plant Pathology, University of Tennessee, Knoxville, TN 37996, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048363065","display_name":"Stacy Ciufo","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stacy Ciufo","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892, USA"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058504203","display_name":"Michael Domrachev","orcid":"https://orcid.org/0000-0001-9156-9443"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Domrachev","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892, USA"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059054710","display_name":"Conrad L. Schoch","orcid":"https://orcid.org/0000-0003-1839-5322"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Conrad L Schoch","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892, USA"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5003319402"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":7.6007,"has_fulltext":false,"cited_by_count":42,"citation_normalized_percentile":{"value":0.96513347,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"2017","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10451","display_name":"Mycorrhizal Fungi and Plant Interactions","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10451","display_name":"Mycorrhizal Fungi and Plant Interactions","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12668","display_name":"Yeasts and Rust Fungi Studies","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/refseq","display_name":"RefSeq","score":0.7427852153778076},{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.729744553565979},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.5841884613037109},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.478658527135849},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.454128623008728},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4294258654117584},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.42225381731987},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.40370482206344604},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.35578060150146484},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3097454607486725},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.24370765686035156},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16168996691703796},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.10878702998161316},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10455784201622009}],"concepts":[{"id":"https://openalex.org/C151810110","wikidata":"https://www.wikidata.org/wiki/Q7307074","display_name":"RefSeq","level":4,"score":0.7427852153778076},{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.729744553565979},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.5841884613037109},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.478658527135849},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.454128623008728},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4294258654117584},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.42225381731987},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.40370482206344604},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.35578060150146484},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3097454607486725},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.24370765686035156},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16168996691703796},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.10878702998161316},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10455784201622009}],"mesh":[{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014242","descriptor_name":"Trichoderma","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014242","descriptor_name":"Trichoderma","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014242","descriptor_name":"Trichoderma","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014242","descriptor_name":"Trichoderma","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014242","descriptor_name":"Trichoderma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014242","descriptor_name":"Trichoderma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014242","descriptor_name":"Trichoderma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014242","descriptor_name":"Trichoderma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bax072","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax072","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax072/21295438/bax072.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:29220466","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29220466","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:4568358","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5641268","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bax072","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax072","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax072/21295438/bax072.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.5600000023841858}],"awards":[],"funders":[{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2786128248.pdf","grobid_xml":"https://content.openalex.org/works/W2786128248.grobid-xml"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W68754310","https://openalex.org/W1500157653","https://openalex.org/W1966659882","https://openalex.org/W1975947053","https://openalex.org/W1978431551","https://openalex.org/W1979827185","https://openalex.org/W1981727849","https://openalex.org/W1992736837","https://openalex.org/W1993679825","https://openalex.org/W1995674722","https://openalex.org/W1996428645","https://openalex.org/W2001088260","https://openalex.org/W2002861821","https://openalex.org/W2027906891","https://openalex.org/W2029216037","https://openalex.org/W2029964402","https://openalex.org/W2030452223","https://openalex.org/W2031345534","https://openalex.org/W2050881995","https://openalex.org/W2054908644","https://openalex.org/W2056072739","https://openalex.org/W2068722925","https://openalex.org/W2072970694","https://openalex.org/W2078210797","https://openalex.org/W2086664980","https://openalex.org/W2099259718","https://openalex.org/W2108520405","https://openalex.org/W2110375946","https://openalex.org/W2114423667","https://openalex.org/W2123936178","https://openalex.org/W2126120909","https://openalex.org/W2129271132","https://openalex.org/W2138146077","https://openalex.org/W2140148710","https://openalex.org/W2147053002","https://openalex.org/W2147663322","https://openalex.org/W2152375430","https://openalex.org/W2154434069","https://openalex.org/W2160947363","https://openalex.org/W2166204368","https://openalex.org/W2173732482","https://openalex.org/W2240081306","https://openalex.org/W2260894375","https://openalex.org/W2278317942","https://openalex.org/W2279184429","https://openalex.org/W2301598227","https://openalex.org/W2411684307","https://openalex.org/W2473930290","https://openalex.org/W2523971020","https://openalex.org/W2532275513","https://openalex.org/W2536767824","https://openalex.org/W2556302733","https://openalex.org/W2567212638","https://openalex.org/W2580606632","https://openalex.org/W2588207325","https://openalex.org/W2888735560","https://openalex.org/W3084401139","https://openalex.org/W3121953277","https://openalex.org/W4210362213","https://openalex.org/W6630078594","https://openalex.org/W6729138062","https://openalex.org/W6731794254"],"related_works":["https://openalex.org/W2990171052","https://openalex.org/W3028206028","https://openalex.org/W3206675662","https://openalex.org/W3028050938","https://openalex.org/W2124685016","https://openalex.org/W4229706141","https://openalex.org/W2150215096","https://openalex.org/W2136456075","https://openalex.org/W4238935654","https://openalex.org/W4386774076"],"abstract_inverted_index":{"The":[0],"ITS":[1,46,143],"(nuclear":[2],"ribosomal":[3],"internal":[4],"transcribed":[5],"spacer)":[6],"RefSeq":[7,144],"database":[8,30,147],"at":[9,148],"the":[10,20,44,70,84,110,123,127,142,168,187,203,236],"National":[11],"Center":[12],"for":[13,79,122],"Biotechnology":[14],"Information":[15],"(NCBI)":[16],"is":[17,31,135],"dedicated":[18],"to":[19,57,69,116,165,230],"clear":[21],"association":[22],"between":[23],"name,":[24],"specimen":[25],"and":[26,72,86,92,98,104,158,176,211],"sequence":[27,47,212],"data.":[28],"This":[29],"focused":[32,76],"on":[33,77],"sequences":[34,155],"obtained":[35,190],"from":[36,156,161,173,191,214],"type":[37,99,157,192,215,237],"material":[38,100,160,193,216,238],"stored":[39],"in":[40,126,167,194],"public":[41],"collections.":[42],"While":[43],"initial":[45],"curation":[48,206],"effort":[49],"together":[50],"with":[51,153],"numerous":[52],"fungal":[53],"taxonomy":[54],"experts":[55],"attempted":[56],"cover":[58],"as":[59,62,233],"many":[60],"orders":[61],"possible,":[63],"we":[64,178],"extended":[65],"our":[66],"latest":[67],"focus":[68],"family":[71],"genus":[73,124],"ranks.":[74],"We":[75],"Trichoderma":[78,125,162],"several":[80],"reasons,":[81],"mainly":[82],"because":[83],"asexual":[85],"sexual":[87],"synonyms":[88],"were":[89,101,209,217],"well":[90],"documented,":[91],"a":[93,118,140,181],"list":[94,182],"of":[95,171,183,186,205,235],"proposed":[96,103],"names":[97],"recently":[102],"published.":[105],"In":[106],"this":[107],"case":[108],"study":[109],"recent":[111],"taxonomic":[112,120],"information":[113],"was":[114],"applied":[115],"do":[117],"complete":[119],"audit":[121],"NCBI":[128,149],"Taxonomy":[129],"database.":[130],"A":[131],"name":[132],"status":[133],"report":[134],"available":[136],"here:":[137],"https://www.ncbi.nlm.nih.gov/Taxonomy/TaxIdentifier/tax_identifier.cgi.":[138],"As":[139],"result,":[141],"Targeted":[145],"Loci":[146],"has":[150],"been":[151],"augmented":[152],"more":[154,227],"verified":[159],"species.":[163],"Additionally,":[164],"aid":[166],"cross":[169],"referencing":[170],"data":[172],"single":[174],"loci":[175],"genomes":[177,208],"have":[179],"collected":[180],"quality":[184],"records":[185,213],"RPB2":[188],"gene":[189],"GenBank":[195],"that":[196],"could":[197],"help":[198],"validate":[199],"future":[200],"submissions.":[201],"During":[202],"process":[204],"misidentified":[207],"discovered,":[210],"found":[218],"hidden":[219],"under":[220],"previous":[221],"classifications.":[222],"Source":[223],"metadata":[224],"curation,":[225],"although":[226],"cumbersome,":[228],"proved":[229],"be":[231],"useful":[232],"confirmation":[234],"designation.":[239],"Database":[240],"URL:http://www.ncbi.nlm.nih.gov/bioproject/PRJNA177353":[241]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
