{"id":"https://openalex.org/W2952849455","doi":"https://doi.org/10.1093/database/bax071","title":"SFMetaDB: a comprehensive annotation of mouse RNA splicing factor RNA-Seq datasets","display_name":"SFMetaDB: a comprehensive annotation of mouse RNA splicing factor RNA-Seq datasets","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2952849455","doi":"https://doi.org/10.1093/database/bax071","mag":"2952849455","pmid":"https://pubmed.ncbi.nlm.nih.gov/29220461"},"language":"en","primary_location":{"id":"doi:10.1093/database/bax071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax071","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax071/23416964/bax071.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax071/23416964/bax071.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100364832","display_name":"Jin Li","orcid":"https://orcid.org/0000-0003-2875-3314"},"institutions":[{"id":"https://openalex.org/I173268674","display_name":"Texas A&M University System","ror":"https://ror.org/0034eay46","country_code":"US","type":"education","lineage":["https://openalex.org/I173268674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jin Li","raw_affiliation_strings":["Department of Electrical and Computer Engineering","TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering, Texas A&M University, College Station, TX 77843, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering","institution_ids":[]},{"raw_affiliation_string":"TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering, Texas A&M University, College Station, TX 77843, USA","institution_ids":["https://openalex.org/I173268674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004810166","display_name":"Ching-San Tseng","orcid":"https://orcid.org/0000-0002-9591-0896"},"institutions":[{"id":"https://openalex.org/I4210096666","display_name":"Institute of Biomedical Sciences, Academia Sinica","ror":"https://ror.org/00tk6s776","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210096666","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Ching-San Tseng","raw_affiliation_strings":["Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210096666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101807666","display_name":"Antonio Federico","orcid":"https://orcid.org/0000-0003-2554-9879"},"institutions":[{"id":"https://openalex.org/I183638586","display_name":"Parthenope University of Naples","ror":"https://ror.org/05pcv4v03","country_code":"IT","type":"education","lineage":["https://openalex.org/I183638586"]},{"id":"https://openalex.org/I4210137461","display_name":"Institute of Genetics and Biophysics","ror":"https://ror.org/04hadk112","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210137461","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Antonio Federico","raw_affiliation_strings":["Department of Science and Technology, University of Naples \u201cParthenope\u201d, Naples, Italy","Institute of Genetics and Biophysics \u201cAdriano Buzzati Traverso\u201d, CNR, Naples, Italy","Department of Science and Technology, University of Naples \"Parthenope\", Naples, Italy","Institute of Genetics and Biophysics \"Adriano Buzzati Traverso\", CNR, Naples, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Science and Technology, University of Naples \u201cParthenope\u201d, Naples, Italy","institution_ids":["https://openalex.org/I183638586"]},{"raw_affiliation_string":"Institute of Genetics and Biophysics \u201cAdriano Buzzati Traverso\u201d, CNR, Naples, Italy","institution_ids":["https://openalex.org/I4210137461"]},{"raw_affiliation_string":"Department of Science and Technology, University of Naples \"Parthenope\", Naples, Italy","institution_ids":["https://openalex.org/I183638586"]},{"raw_affiliation_string":"Institute of Genetics and Biophysics \"Adriano Buzzati Traverso\", CNR, Naples, Italy","institution_ids":["https://openalex.org/I4210137461"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090243609","display_name":"Franjo Ivankovic","orcid":"https://orcid.org/0000-0002-6776-8626"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Franjo Ivankovic","raw_affiliation_strings":["Department of Molecular Genetics and Microbiology, Center for NeuroGenetics and the Genetics Institute, College of Medicine, University of Florida, Gainesville, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Genetics and Microbiology, Center for NeuroGenetics and the Genetics Institute, College of Medicine, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027427537","display_name":"Yi\u2010Shuian Huang","orcid":"https://orcid.org/0000-0001-9000-7748"},"institutions":[{"id":"https://openalex.org/I4210096666","display_name":"Institute of Biomedical Sciences, Academia Sinica","ror":"https://ror.org/00tk6s776","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210096666","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yi-Shuian Huang","raw_affiliation_strings":["Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210096666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009911982","display_name":"Alfredo Ciccodicola","orcid":"https://orcid.org/0000-0002-9924-1482"},"institutions":[{"id":"https://openalex.org/I183638586","display_name":"Parthenope University of Naples","ror":"https://ror.org/05pcv4v03","country_code":"IT","type":"education","lineage":["https://openalex.org/I183638586"]},{"id":"https://openalex.org/I4210137461","display_name":"Institute of Genetics and Biophysics","ror":"https://ror.org/04hadk112","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210137461","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alfredo Ciccodicola","raw_affiliation_strings":["Department of Science and Technology, University of Naples \u201cParthenope\u201d, Naples, Italy","Institute of Genetics and Biophysics \u201cAdriano Buzzati Traverso\u201d, CNR, Naples, Italy","Department of Science and Technology, University of Naples \"Parthenope\", Naples, Italy","Institute of Genetics and Biophysics \"Adriano Buzzati Traverso\", CNR, Naples, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Science and Technology, University of Naples \u201cParthenope\u201d, Naples, Italy","institution_ids":["https://openalex.org/I183638586"]},{"raw_affiliation_string":"Institute of Genetics and Biophysics \u201cAdriano Buzzati Traverso\u201d, CNR, Naples, Italy","institution_ids":["https://openalex.org/I4210137461"]},{"raw_affiliation_string":"Department of Science and Technology, University of Naples \"Parthenope\", Naples, Italy","institution_ids":["https://openalex.org/I183638586"]},{"raw_affiliation_string":"Institute of Genetics and Biophysics \"Adriano Buzzati Traverso\", CNR, Naples, Italy","institution_ids":["https://openalex.org/I4210137461"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050025082","display_name":"Maurice S. Swanson","orcid":"https://orcid.org/0000-0001-6245-5367"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maurice S. Swanson","raw_affiliation_strings":["Department of Molecular Genetics and Microbiology, Center for NeuroGenetics and the Genetics Institute, College of Medicine, University of Florida, Gainesville, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Genetics and Microbiology, Center for NeuroGenetics and the Genetics Institute, College of Medicine, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004456961","display_name":"Peng Yu","orcid":"https://orcid.org/0000-0002-3948-3340"},"institutions":[{"id":"https://openalex.org/I173268674","display_name":"Texas A&M University System","ror":"https://ror.org/0034eay46","country_code":"US","type":"education","lineage":["https://openalex.org/I173268674"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Peng Yu","raw_affiliation_strings":["Department of Electrical and Computer Engineering","TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering, Texas A&M University, College Station, TX 77843, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering","institution_ids":[]},{"raw_affiliation_string":"TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering, Texas A&M University, College Station, TX 77843, USA","institution_ids":["https://openalex.org/I173268674"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5004456961"],"corresponding_institution_ids":["https://openalex.org/I173268674"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.0136,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.75753566,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"2017","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.9277198910713196},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6471460461616516},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6320508718490601},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.6181811690330505},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.591221809387207},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5262044072151184},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5225296020507812},{"id":"https://openalex.org/keywords/splicing-factor","display_name":"Splicing factor","score":0.4821486175060272},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4148094952106476},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.3777695298194885},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.35174477100372314},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2953075170516968},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.18420445919036865},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1506052315235138}],"concepts":[{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.9277198910713196},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6471460461616516},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6320508718490601},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.6181811690330505},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.591221809387207},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5262044072151184},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5225296020507812},{"id":"https://openalex.org/C73758832","wikidata":"https://www.wikidata.org/wiki/Q7578564","display_name":"Splicing factor","level":5,"score":0.4821486175060272},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4148094952106476},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.3777695298194885},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.35174477100372314},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2953075170516968},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.18420445919036865},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1506052315235138}],"mesh":[{"descriptor_ui":"D000072260","descriptor_name":"RNA Splicing Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000072260","descriptor_name":"RNA Splicing Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000072260","descriptor_name":"RNA Splicing Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012326","descriptor_name":"RNA Splicing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012326","descriptor_name":"RNA Splicing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012326","descriptor_name":"RNA Splicing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/bax071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax071","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax071/23416964/bax071.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:29220461","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29220461","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5737203","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5737203","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"pmh:oai:ricerca.uniparthenope.it:11367/81375","is_oa":false,"landing_page_url":"http://hdl.handle.net/11367/81375","pdf_url":null,"source":{"id":"https://openalex.org/S4377196432","display_name":"CINECA IRIS Institutial research information system (Parthenope University of Naples)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I183638586","host_organization_name":"Parthenope University of Naples","host_organization_lineage":["https://openalex.org/I183638586"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/database/bax071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax071","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax071/23416964/bax071.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1652938237","display_name":"ADMINISTRATIVE CORE","funder_award_id":"5p01ns058901-11","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6944541163","display_name":"Molecular effects of metformin, PKR and TBI on C9orf72 ALS/FTD","funder_award_id":"2rf1ns098819-06","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2952849455.pdf","grobid_xml":"https://content.openalex.org/works/W2952849455.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1455682513","https://openalex.org/W1535548930","https://openalex.org/W1843824229","https://openalex.org/W1865161519","https://openalex.org/W1964904043","https://openalex.org/W1983567075","https://openalex.org/W2006740199","https://openalex.org/W2020541351","https://openalex.org/W2048575195","https://openalex.org/W2103017472","https://openalex.org/W2124425346","https://openalex.org/W2136256100","https://openalex.org/W2146749911","https://openalex.org/W2159482845","https://openalex.org/W2171421878","https://openalex.org/W2224056471","https://openalex.org/W2230655163","https://openalex.org/W2269461016","https://openalex.org/W2403981087","https://openalex.org/W2519944612","https://openalex.org/W2546746451","https://openalex.org/W2558889421","https://openalex.org/W2739999456","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W4213427798","https://openalex.org/W2515668871","https://openalex.org/W2009001388","https://openalex.org/W2564462691","https://openalex.org/W2023199111","https://openalex.org/W3012654451","https://openalex.org/W3002046464","https://openalex.org/W2321791250","https://openalex.org/W2060213717","https://openalex.org/W1929261690"],"abstract_inverted_index":{"Although":[0],"the":[1,11,18,27,55,87,90,106,149,163],"number":[2],"of":[3,17,26,29,89,93,104,162],"RNA-Seq":[4,56],"datasets":[5,45,57,70,77],"deposited":[6],"publicly":[7],"has":[8],"increased":[9],"over":[10],"past":[12],"few":[13,127],"years,":[14],"incomplete":[15],"annotation":[16],"associated":[19],"metadata":[20],"limits":[21],"their":[22],"potential":[23,91],"use.":[24],"Because":[25],"importance":[28],"RNA":[30,48],"splicing":[31,49,60,74,84,95,107,121,150,165,178],"in":[32,58,81,180,183],"diseases":[33],"and":[34,97,167,182],"biological":[35],"processes,":[36],"we":[37],"constructed":[38],"a":[39,126,138,171],"database":[40],"called":[41],"SFMetaDB":[42],"by":[43,112],"curating":[44],"related":[46],"with":[47,123],"factors.":[50,75],"Our":[51],"effort":[52],"focused":[53],"on":[54],"which":[59],"factors":[61,96,108,122,179],"were":[62],"knocked-down,":[63],"knocked-out":[64],"or":[65,114],"over-expressed,":[66],"leading":[67],"to":[68,72,143,146,175],"75":[69],"corresponding":[71],"56":[73],"These":[76],"can":[78,169],"be":[79,144,170],"used":[80],"differential":[82],"alternative":[83],"analysis":[85],"for":[86,160],"identification":[88],"targets":[92],"these":[94,177],"other":[98],"functional":[99],"studies.":[100],"Surprisingly,":[101],"only":[102],"\u223c15%":[103],"all":[105],"have":[109,132],"been":[110,134],"studied":[111],"loss-":[113],"gain-of-function":[115],"experiments":[116],"using":[117,185],"RNA-Seq.":[118,186],"In":[119],"particular,":[120],"domains":[124],"from":[125],"dominant":[128],"Pfam":[129],"domain":[130],"families":[131],"not":[133],"studied.":[135],"This":[136],"suggests":[137],"significant":[139],"gap":[140],"that":[141],"needs":[142],"addressed":[145],"fully":[147],"elucidate":[148],"regulatory":[151],"landscape.":[152],"Indeed,":[153],"there":[154],"are":[155],"already":[156],"mouse":[157],"models":[158],"available":[159],"\u223c20":[161],"unstudied":[164],"factors,":[166],"it":[168],"fruitful":[172],"research":[173],"direction":[174],"study":[176],"vitro":[181],"vivo":[184],"Database":[187],"URL:http://sfmetadb.ece.tamu.edu/":[188]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":8},{"year":2016,"cited_by_count":1}],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2025-10-10T00:00:00"}
