{"id":"https://openalex.org/W2748773800","doi":"https://doi.org/10.1093/database/bax060","title":"A RESTful application programming interface for the PubMLST molecular typing and genome databases","display_name":"A RESTful application programming interface for the PubMLST molecular typing and genome databases","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2748773800","doi":"https://doi.org/10.1093/database/bax060","mag":"2748773800","pmid":"https://pubmed.ncbi.nlm.nih.gov/29220452"},"language":"en","primary_location":{"id":"doi:10.1093/database/bax060","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax060","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax060/19489923/bax060.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax060/19489923/bax060.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043485383","display_name":"Keith A. Jolley","orcid":"https://orcid.org/0000-0002-0751-0287"},"institutions":[{"id":"https://openalex.org/I4210100268","display_name":"Medawar Building for Pathogen Research","ror":"https://ror.org/017g85521","country_code":"GB","type":"facility","lineage":["https://openalex.org/I40120149","https://openalex.org/I4210100268"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Keith A. Jolley","raw_affiliation_strings":["Department of Zoology, Peter Medawar Building for Pathogen Research, University of Oxford, South Parks Road, Oxford, OX1 3SY, UK"],"affiliations":[{"raw_affiliation_string":"Department of Zoology, Peter Medawar Building for Pathogen Research, University of Oxford, South Parks Road, Oxford, OX1 3SY, UK","institution_ids":["https://openalex.org/I4210100268","https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064855716","display_name":"James E. Bray","orcid":"https://orcid.org/0000-0003-3554-4254"},"institutions":[{"id":"https://openalex.org/I4210100268","display_name":"Medawar Building for Pathogen Research","ror":"https://ror.org/017g85521","country_code":"GB","type":"facility","lineage":["https://openalex.org/I40120149","https://openalex.org/I4210100268"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James E. Bray","raw_affiliation_strings":["Department of Zoology, Peter Medawar Building for Pathogen Research, University of Oxford, South Parks Road, Oxford, OX1 3SY, UK"],"affiliations":[{"raw_affiliation_string":"Department of Zoology, Peter Medawar Building for Pathogen Research, University of Oxford, South Parks Road, Oxford, OX1 3SY, UK","institution_ids":["https://openalex.org/I4210100268","https://openalex.org/I40120149"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083239509","display_name":"Martin Maiden","orcid":"https://orcid.org/0000-0001-6321-5138"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210100268","display_name":"Medawar Building for Pathogen Research","ror":"https://ror.org/017g85521","country_code":"GB","type":"facility","lineage":["https://openalex.org/I40120149","https://openalex.org/I4210100268"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Martin C. J. Maiden","raw_affiliation_strings":["Department of Zoology, Peter Medawar Building for Pathogen Research, University of Oxford, South Parks Road, Oxford, OX1 3SY, UK"],"affiliations":[{"raw_affiliation_string":"Department of Zoology, Peter Medawar Building for Pathogen Research, University of Oxford, South Parks Road, Oxford, OX1 3SY, UK","institution_ids":["https://openalex.org/I4210100268","https://openalex.org/I40120149"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5043485383"],"corresponding_institution_ids":["https://openalex.org/I40120149","https://openalex.org/I4210100268"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":4.9869,"has_fulltext":true,"cited_by_count":33,"citation_normalized_percentile":{"value":0.9458475,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"2017","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10486","display_name":"Salmonella and Campylobacter epidemiology","score":0.984499990940094,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10486","display_name":"Salmonella and Campylobacter epidemiology","score":0.984499990940094,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9692000150680542,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9496999979019165,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7655640840530396},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5987693667411804},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.519742488861084},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.49079379439353943},{"id":"https://openalex.org/keywords/typing","display_name":"Typing","score":0.4830254018306732},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.46970006823539734},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.38125625252723694},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3586193323135376},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.22122874855995178}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7655640840530396},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5987693667411804},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.519742488861084},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.49079379439353943},{"id":"https://openalex.org/C2781209916","wikidata":"https://www.wikidata.org/wiki/Q3215756","display_name":"Typing","level":2,"score":0.4830254018306732},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.46970006823539734},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.38125625252723694},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3586193323135376},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.22122874855995178},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C28490314","wikidata":"https://www.wikidata.org/wiki/Q189436","display_name":"Speech recognition","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058889","descriptor_name":"Molecular Typing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058889","descriptor_name":"Molecular Typing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058889","descriptor_name":"Molecular Typing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/bax060","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax060","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax060/19489923/bax060.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:29220452","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29220452","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:4460756","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5550937","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:e70d445f-27de-424b-b6cb-47d53a8fc010","is_oa":true,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:e70d445f-27de-424b-b6cb-47d53a8fc010","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1093/database/bax060","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax060","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax060/19489923/bax060.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.6100000143051147,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1977260122","display_name":null,"funder_award_id":"104992","funder_id":"https://openalex.org/F4320307874","funder_display_name":"Wellcome"}],"funders":[{"id":"https://openalex.org/F4320307874","display_name":"Wellcome","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320323424","display_name":"Universidade de Lisboa","ror":"https://ror.org/01c27hj86"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2748773800.pdf","grobid_xml":"https://content.openalex.org/works/W2748773800.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W998830013","https://openalex.org/W1614889471","https://openalex.org/W1806778326","https://openalex.org/W2032142842","https://openalex.org/W2053940732","https://openalex.org/W2125302790","https://openalex.org/W2142503351","https://openalex.org/W2165471800","https://openalex.org/W2166642025","https://openalex.org/W2170811288","https://openalex.org/W2343763025","https://openalex.org/W2582892667","https://openalex.org/W6626005478","https://openalex.org/W6636722166","https://openalex.org/W6638270785","https://openalex.org/W6658654026","https://openalex.org/W6663897572","https://openalex.org/W6680948284","https://openalex.org/W6684348153","https://openalex.org/W6684618151","https://openalex.org/W6685054676","https://openalex.org/W6732834414"],"related_works":["https://openalex.org/W3176169626","https://openalex.org/W1606200072","https://openalex.org/W2057351134","https://openalex.org/W1979674660","https://openalex.org/W1981020211","https://openalex.org/W2013429256","https://openalex.org/W1989807515","https://openalex.org/W1998706901","https://openalex.org/W2410970605","https://openalex.org/W2469313697"],"abstract_inverted_index":{"http://rest.pubmlst.org/.":[0]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":4}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
