{"id":"https://openalex.org/W2748847540","doi":"https://doi.org/10.1093/database/bax059","title":"BioSearch: a semantic search engine for Bio2RDF","display_name":"BioSearch: a semantic search engine for Bio2RDF","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2748847540","doi":"https://doi.org/10.1093/database/bax059","mag":"2748847540","pmid":"https://pubmed.ncbi.nlm.nih.gov/29220451"},"language":"en","primary_location":{"id":"doi:10.1093/database/bax059","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax059","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax059/19488573/bax059.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax059/19488573/bax059.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100727084","display_name":"Wei Hu","orcid":"https://orcid.org/0000-0003-3635-6335"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]},{"id":"https://openalex.org/I881766915","display_name":"Nanjing University","ror":"https://ror.org/01rxvg760","country_code":"CN","type":"education","lineage":["https://openalex.org/I881766915"]}],"countries":["CN","NL"],"is_corresponding":true,"raw_author_name":"Wei Hu","raw_affiliation_strings":["Institute of Data Science, Maastricht University, The Netherlands","State Key Laboratory for Novel Software Technology, Nanjing University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Data Science, Maastricht University, The Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"State Key Laboratory for Novel Software Technology, Nanjing University, China","institution_ids":["https://openalex.org/I881766915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089019302","display_name":"Honglei Qiu","orcid":null},"institutions":[{"id":"https://openalex.org/I881766915","display_name":"Nanjing University","ror":"https://ror.org/01rxvg760","country_code":"CN","type":"education","lineage":["https://openalex.org/I881766915"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Honglei Qiu","raw_affiliation_strings":["State Key Laboratory for Novel Software Technology, Nanjing University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory for Novel Software Technology, Nanjing University, China","institution_ids":["https://openalex.org/I881766915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100742563","display_name":"Jiacheng Huang","orcid":"https://orcid.org/0000-0003-1466-7132"},"institutions":[{"id":"https://openalex.org/I881766915","display_name":"Nanjing University","ror":"https://ror.org/01rxvg760","country_code":"CN","type":"education","lineage":["https://openalex.org/I881766915"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiacheng Huang","raw_affiliation_strings":["State Key Laboratory for Novel Software Technology, Nanjing University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory for Novel Software Technology, Nanjing University, China","institution_ids":["https://openalex.org/I881766915"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044836472","display_name":"Michel Dumontier","orcid":"https://orcid.org/0000-0003-4727-9435"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Michel Dumontier","raw_affiliation_strings":["Institute of Data Science, Maastricht University, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Data Science, Maastricht University, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5044836472","https://openalex.org/A5100727084"],"corresponding_institution_ids":["https://openalex.org/I34352273","https://openalex.org/I881766915"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":2.5339,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.90395245,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"2017","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9395999908447266,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.7397082448005676},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7259042859077454},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.659619927406311},{"id":"https://openalex.org/keywords/semantic-search","display_name":"Semantic search","score":0.5349864363670349},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5183787941932678},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3433920741081238}],"concepts":[{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.7397082448005676},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7259042859077454},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.659619927406311},{"id":"https://openalex.org/C166423231","wikidata":"https://www.wikidata.org/wiki/Q1891170","display_name":"Semantic search","level":3,"score":0.5349864363670349},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5183787941932678},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3433920741081238}],"mesh":[{"descriptor_ui":"D000075403","descriptor_name":"Semantic Web","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000075403","descriptor_name":"Semantic Web","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000075403","descriptor_name":"Semantic Web","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/bax059","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax059","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax059/19488573/bax059.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:29220451","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29220451","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:cris.maastrichtuniversity.nl:openaire/560be6d1-2156-4619-a581-cac28b4e2efe","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5569678","pdf_url":null,"source":{"id":"https://openalex.org/S4306402616","display_name":"Research Publications (Maastricht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I34352273","host_organization_name":"Maastricht University","host_organization_lineage":["https://openalex.org/I34352273"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Hu, W, Qiu, H, Huang, J & Dumontier, M 2017, 'BioSearch: a semantic search engine for Bio2RDF', Database-The Journal of Biological Databases and Curation, pp. 1-13. https://doi.org/10.1093/database/bax059","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:cris.maastrichtuniversity.nl:publications/560be6d1-2156-4619-a581-cac28b4e2efe","is_oa":true,"landing_page_url":"https://cris.maastrichtuniversity.nl/en/publications/560be6d1-2156-4619-a581-cac28b4e2efe","pdf_url":"https://cris.maastrichtuniversity.nl/en/publications/560be6d1-2156-4619-a581-cac28b4e2efe","source":{"id":"https://openalex.org/S4306402616","display_name":"Research Publications (Maastricht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I34352273","host_organization_name":"Maastricht University","host_organization_lineage":["https://openalex.org/I34352273"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Hu, W, Qiu, H, Huang, J & Dumontier, M 2017, 'BioSearch: a semantic search engine for Bio2RDF', Database-The Journal of Biological Databases and Curation, pp. 1-13. https://doi.org/10.1093/database/bax059","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/database/bax059","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax059","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax059/19488573/bax059.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","score":0.4099999964237213,"id":"https://metadata.un.org/sdg/12"}],"awards":[{"id":"https://openalex.org/G4115611980","display_name":"\u57fa\u4e8e\u5927\u4f17\u53c2\u4e0e\u7684\u8bed\u4e49Web\u5b9e\u4f53\u94fe\u63a5\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61370019","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6667581590","display_name":null,"funder_award_id":"61321491","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2748847540.pdf"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W44845170","https://openalex.org/W1501546233","https://openalex.org/W1969142598","https://openalex.org/W1970939142","https://openalex.org/W1989848777","https://openalex.org/W2004817090","https://openalex.org/W2019543926","https://openalex.org/W2064930103","https://openalex.org/W2083737859","https://openalex.org/W2101493333","https://openalex.org/W2108177663","https://openalex.org/W2113310608","https://openalex.org/W2132784310","https://openalex.org/W2133739876","https://openalex.org/W2144427809","https://openalex.org/W2149473031","https://openalex.org/W2161549461","https://openalex.org/W2165428180","https://openalex.org/W2165685472","https://openalex.org/W2170282111","https://openalex.org/W6630000427"],"related_works":["https://openalex.org/W2023370952","https://openalex.org/W2187134628","https://openalex.org/W167737004","https://openalex.org/W1964038241","https://openalex.org/W2185038817","https://openalex.org/W2385957133","https://openalex.org/W2004064649","https://openalex.org/W3590553","https://openalex.org/W1974306718","https://openalex.org/W3141094475"],"abstract_inverted_index":{"Biomedical":[0],"data":[1,14,55,80],"are":[2,56,69,81],"growing":[3],"at":[4],"an":[5],"incredible":[6],"pace":[7],"and":[8,25,37,71,118,141,151,160],"require":[9],"substantial":[10],"expertise":[11],"to":[12,32,39,66,75,92,113,132,138],"organize":[13,119],"in":[15],"a":[16,41,106,125],"manner":[17],"that":[18,79,110,129,146],"makes":[19],"them":[20],"easily":[21],"findable,":[22],"accessible,":[23],"interoperable":[24],"reusable.":[26],"Massive":[27],"effort":[28],"has":[29],"been":[30],"devoted":[31],"using":[33,85],"Semantic":[34],"Web":[35],"standards":[36],"technologies":[38],"create":[40],"network":[42],"of":[43,156],"Linked":[44],"Data":[45],"for":[46,64],"the":[47,157],"life":[48],"sciences,":[49],"among":[50],"others.":[51],"However,":[52],"while":[53],"these":[54],"accessible":[57],"through":[58],"programmatic":[59],"means,":[60],"effective":[61,150],"user":[62,76],"interfaces":[63],"non-experts":[65],"SPARQL":[67,100],"endpoints":[68],"few":[70],"far":[72],"between.":[73],"Contributing":[74],"frustrations":[77],"is":[78,148],"not":[82],"necessarily":[83],"described":[84],"common":[86],"vocabularies,":[87],"thereby":[88],"making":[89],"it":[90],"difficult":[91],"aggregate":[93],"results,":[94],"especially":[95],"when":[96],"distributed":[97],"across":[98],"multiple":[99],"endpoints.":[101],"We":[102],"propose":[103],"BioSearch":[104,122,147],"\u2014":[105],"semantic":[107],"search":[108,120,159],"engine":[109],"uses":[111],"ontologies":[112],"enhance":[114],"federated":[115],"query":[116,127],"construction":[117],"results.":[121],"also":[123],"features":[124],"simplified":[126],"interface":[128],"allows":[130],"users":[131],"optionally":[133],"filter":[134],"their":[135],"keywords":[136],"according":[137],"classes,":[139],"properties":[140],"datasets.":[142],"User":[143],"evaluation":[144],"demonstrated":[145],"more":[149],"usable":[152],"than":[153],"two":[154],"state":[155],"art":[158],"browsing":[161],"solutions.":[162],"Database":[163],"URL:http://ws.nju.edu.cn/biosearch/":[164]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":1}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
