{"id":"https://openalex.org/W2785580053","doi":"https://doi.org/10.1093/database/bax052","title":"New extension software modules to enhance searching and display of transcriptome data in Tripal databases","display_name":"New extension software modules to enhance searching and display of transcriptome data in Tripal databases","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2785580053","doi":"https://doi.org/10.1093/database/bax052","mag":"2785580053","pmid":"https://pubmed.ncbi.nlm.nih.gov/29220446"},"language":"en","primary_location":{"id":"doi:10.1093/database/bax052","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax052","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax052/19342736/bax052.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax052/19342736/bax052.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100423262","display_name":"Ming Chen","orcid":"https://orcid.org/0000-0002-3164-8884"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ming Chen","raw_affiliation_strings":["Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, USA","Department of Genome Science and Technology, University of Tennessee, Knoxville, TN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, USA","institution_ids":["https://openalex.org/I75027704"]},{"raw_affiliation_string":"Department of Genome Science and Technology, University of Tennessee, Knoxville, TN, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050316954","display_name":"Nathan Henry","orcid":"https://orcid.org/0000-0002-7033-8467"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nathan Henry","raw_affiliation_strings":["Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071568297","display_name":"Abdullah Almsaeed","orcid":"https://orcid.org/0000-0002-3804-1188"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abdullah Almsaeed","raw_affiliation_strings":["Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101532417","display_name":"Xiao Zhou","orcid":"https://orcid.org/0000-0002-1075-4768"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiao Zhou","raw_affiliation_strings":["Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061135911","display_name":"Jill Wegrzyn","orcid":"https://orcid.org/0000-0001-5923-0888"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jill Wegrzyn","raw_affiliation_strings":["Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA and","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015114586","display_name":"Stephen Ficklin","orcid":"https://orcid.org/0000-0001-9138-6292"},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen Ficklin","raw_affiliation_strings":["Department of Horticulture, Washington State University, Pullman, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Horticulture, Washington State University, Pullman, WA, USA","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021572745","display_name":"Margaret Staton","orcid":"https://orcid.org/0000-0003-2971-9353"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Margaret Staton","raw_affiliation_strings":["Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, USA","institution_ids":["https://openalex.org/I75027704"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5021572745"],"corresponding_institution_ids":["https://openalex.org/I75027704"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.0094,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.76411205,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"2017","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9735999703407288,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9186000227928162,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.721832275390625},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6495330333709717},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5888621211051941},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5811796188354492},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.580985963344574},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5755877494812012},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.5651156902313232},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4491835832595825},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.44334834814071655},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.42012906074523926},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.412864625453949},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3905158042907715},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3731110692024231},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.31753331422805786},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.17465457320213318},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16727524995803833},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15826985239982605},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15731945633888245},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.12848243117332458},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.106832355260849}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.721832275390625},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6495330333709717},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5888621211051941},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5811796188354492},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.580985963344574},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5755877494812012},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.5651156902313232},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4491835832595825},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.44334834814071655},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.42012906074523926},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.412864625453949},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3905158042907715},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3731110692024231},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.31753331422805786},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.17465457320213318},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16727524995803833},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15826985239982605},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15731945633888245},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.12848243117332458},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.106832355260849},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bax052","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax052","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax052/19342736/bax052.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:29220446","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29220446","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5532966","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5532966","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bax052","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax052","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax052/19342736/bax052.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3484266289","display_name":null,"funder_award_id":"1443040","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7618748963","display_name":null,"funder_award_id":"1444573","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309913","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17"},{"id":"https://openalex.org/F4320313934","display_name":"Institut national de recherche en informatique et en automatique (INRIA)","ror":"https://ror.org/02kvxyf05"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2785580053.pdf","grobid_xml":"https://content.openalex.org/works/W2785580053.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1967204795","https://openalex.org/W1973996769","https://openalex.org/W1974412690","https://openalex.org/W1981509058","https://openalex.org/W2002895567","https://openalex.org/W2004419591","https://openalex.org/W2010986687","https://openalex.org/W2036288429","https://openalex.org/W2061537056","https://openalex.org/W2066562421","https://openalex.org/W2067360806","https://openalex.org/W2072008344","https://openalex.org/W2086491289","https://openalex.org/W2097311303","https://openalex.org/W2098229525","https://openalex.org/W2101291993","https://openalex.org/W2150518045","https://openalex.org/W2151397621","https://openalex.org/W2153116581","https://openalex.org/W2158714788","https://openalex.org/W2159482845","https://openalex.org/W2169048699","https://openalex.org/W2236822143","https://openalex.org/W2302501749","https://openalex.org/W2310622210","https://openalex.org/W2517456288","https://openalex.org/W2951781413","https://openalex.org/W6642178877","https://openalex.org/W6643823925","https://openalex.org/W6643992172","https://openalex.org/W6645515742","https://openalex.org/W6651455619","https://openalex.org/W6659554579","https://openalex.org/W6665804121","https://openalex.org/W6667050938","https://openalex.org/W6667274288","https://openalex.org/W6668569464","https://openalex.org/W6672491165","https://openalex.org/W6674487226","https://openalex.org/W6674732472","https://openalex.org/W6675014815","https://openalex.org/W6682485023","https://openalex.org/W6682604482","https://openalex.org/W6683179228","https://openalex.org/W6683482301","https://openalex.org/W6689944646","https://openalex.org/W6697856287","https://openalex.org/W6726659714","https://openalex.org/W6842933097","https://openalex.org/W7073905201"],"related_works":["https://openalex.org/W2251247982","https://openalex.org/W2059565715","https://openalex.org/W2901823680","https://openalex.org/W2009940763","https://openalex.org/W4386637333","https://openalex.org/W2946410450","https://openalex.org/W4361192415","https://openalex.org/W2126804125","https://openalex.org/W2162782320","https://openalex.org/W2137318037"],"abstract_inverted_index":{"Tripal":[0,63,68,79,92,104,136,259,265,268],"is":[1],"an":[2,171],"open":[3,248],"source":[4,154],"software":[5,80,203],"package":[6],"for":[7,31,69,83,126],"developing":[8],"biological":[9,153],"databases":[10],"with":[11],"a":[12,22,103,199],"focus":[13],"on":[14,61],"genetic":[15,45],"and":[16,33,37,44,65,140,160,180,198,231,253],"genomic":[17],"data.":[18,166],"It":[19],"consists":[20],"of":[21,24,77,98,102,111,115,123,170,201],"set":[23],"core":[25,49,64],"modules":[26,58,246],"that":[27],"deliver":[28],"essential":[29],"functions":[30],"loading":[32],"displaying":[34],"data":[35,117,196,216],"records":[36,142],"associated":[38],"attributes":[39],"including":[40,222],"organisms,":[41],"sequence":[42],"features":[43],"markers.":[46],"Beyond":[47],"the":[48,62,75,78,99,109,121,165,168,177,187,194,202,209,241,258],"modules,":[50],"community":[51,71],"members":[52],"are":[53,247],"encouraged":[54],"to":[55,59,66,163,183,207],"contribute":[56],"extension":[57,90],"build":[60],"customize":[67],"individual":[70,178],"needs.":[72],"To":[73],"expand":[74],"utility":[76],"system,":[81],"particularly":[82],"RNASeq":[84,172,195],"data,":[85],"we":[86],"developed":[87],"two":[88],"new":[89],"modules.":[91],"Elasticsearch":[93,266],"enables":[94],"fast,":[95],"scalable":[96],"searching":[97,127],"entire":[100],"content":[101],"site":[105],"as":[106,108,148],"well":[107],"construction":[110],"customized":[112],"advanced":[113],"searches":[114],"specific":[116],"types.":[118],"We":[119],"demonstrate":[120],"use":[122],"this":[124,174],"module":[125,213],"assembled":[128],"transcripts":[129],"by":[130,237],"functional":[131],"annotation.":[132],"A":[133],"second":[134],"module,":[135],"Analysis":[137,269],"Expression,":[138],"houses":[139],"displays":[141],"from":[143,193,217],"gene":[144,157,189],"expression":[145,158,190,210],"assays":[146],"such":[147],"RNA":[149],"sequencing.":[150],"This":[151],"includes":[152],"materials":[155],"(biomaterials),":[156],"values":[159,191],"protocols":[161],"used":[162,182,206],"generate":[164,208],"In":[167],"case":[169],"experiment,":[173],"would":[175],"reflect":[176],"organisms":[179],"tissues":[181],"produce":[184],"sequencing":[185],"libraries,":[186],"normalized":[188],"derived":[192],"analysis":[197],"description":[200],"or":[204],"code":[205],"values.":[211],"The":[212],"will":[214],"load":[215],"common":[218],"flat":[219],"file":[220],"formats":[221],"standard":[223],"NCBI":[224],"Biosample":[225],"XML.":[226],"Data":[227],"loading,":[228],"display":[229],"options":[230],"other":[232],"configurations":[233],"can":[234,254],"be":[235,255],"controlled":[236],"authorized":[238],"users":[239],"in":[240,257],"Drupal":[242],"administrative":[243],"backend.":[244],"Both":[245],"source,":[249],"include":[250],"usage":[251],"documentation,":[252],"found":[256],"organization\u2019s":[260],"GitHub":[261],"repository.":[262],"Database":[263],"URL:":[264],"module:https://github.com/tripal/tripal_elasticsearch":[267],"Expression":[270],"module:https://github.com/tripal/tripal_analysis_expression":[271]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":4}],"updated_date":"2026-05-16T08:24:45.110214","created_date":"2025-10-10T00:00:00"}
