{"id":"https://openalex.org/W2732651590","doi":"https://doi.org/10.1093/database/bax040","title":"Triage by ranking to support the curation of protein interactions","display_name":"Triage by ranking to support the curation of protein interactions","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2732651590","doi":"https://doi.org/10.1093/database/bax040","mag":"2732651590","pmid":"https://pubmed.ncbi.nlm.nih.gov/29220432"},"language":"en","primary_location":{"id":"doi:10.1093/database/bax040","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax040","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax040/19234641/bax040.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax040/19234641/bax040.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049986775","display_name":"Luc Mottin","orcid":"https://orcid.org/0000-0002-9614-9293"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I4210088449","display_name":"HES-SO Gen\u00e8ve","ror":"https://ror.org/007gfwn20","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891","https://openalex.org/I4210088449"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Luc Mottin","raw_affiliation_strings":["Information Science Department, BiTeM Group, HES-SO/HEG Gen\u00e8ve, 17 Rue de la Tambourine, Carouge CH-1227, Switzerland","SIB Text Mining, Swiss Institute of Bioinformatics, 17 Rue de la Tambourine, Carouge CH-1227, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Science Department, BiTeM Group, HES-SO/HEG Gen\u00e8ve, 17 Rue de la Tambourine, Carouge CH-1227, Switzerland","institution_ids":["https://openalex.org/I4210088449"]},{"raw_affiliation_string":"SIB Text Mining, Swiss Institute of Bioinformatics, 17 Rue de la Tambourine, Carouge CH-1227, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017034341","display_name":"Emilie Pasche","orcid":"https://orcid.org/0000-0002-9118-5762"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I4210088449","display_name":"HES-SO Gen\u00e8ve","ror":"https://ror.org/007gfwn20","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891","https://openalex.org/I4210088449"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Emilie Pasche","raw_affiliation_strings":["Information Science Department, BiTeM Group, HES-SO/HEG Gen\u00e8ve, 17 Rue de la Tambourine, Carouge CH-1227, Switzerland","SIB Text Mining, Swiss Institute of Bioinformatics, 17 Rue de la Tambourine, Carouge CH-1227, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Science Department, BiTeM Group, HES-SO/HEG Gen\u00e8ve, 17 Rue de la Tambourine, Carouge CH-1227, Switzerland","institution_ids":["https://openalex.org/I4210088449"]},{"raw_affiliation_string":"SIB Text Mining, Swiss Institute of Bioinformatics, 17 Rue de la Tambourine, Carouge CH-1227, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091440467","display_name":"Julien Gobeill","orcid":"https://orcid.org/0000-0001-9809-7741"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I4210088449","display_name":"HES-SO Gen\u00e8ve","ror":"https://ror.org/007gfwn20","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891","https://openalex.org/I4210088449"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Julien Gobeill","raw_affiliation_strings":["Information Science Department, BiTeM Group, HES-SO/HEG Gen\u00e8ve, 17 Rue de la Tambourine, Carouge CH-1227, Switzerland","SIB Text Mining, Swiss Institute of Bioinformatics, 17 Rue de la Tambourine, Carouge CH-1227, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Science Department, BiTeM Group, HES-SO/HEG Gen\u00e8ve, 17 Rue de la Tambourine, Carouge CH-1227, Switzerland","institution_ids":["https://openalex.org/I4210088449"]},{"raw_affiliation_string":"SIB Text Mining, Swiss Institute of Bioinformatics, 17 Rue de la Tambourine, Carouge CH-1227, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091766854","display_name":"Valentine Rech de Laval","orcid":"https://orcid.org/0000-0002-3020-1490"},"institutions":[{"id":"https://openalex.org/I114457229","display_name":"University of Geneva","ror":"https://ror.org/01swzsf04","country_code":"CH","type":"education","lineage":["https://openalex.org/I114457229"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Valentine Rech de Laval","raw_affiliation_strings":["CALIPHO Group, Swiss Institute of Bioinformatics, 1 Rue Michel-Servet, Geneva CH-1206, Switzerland","University of Geneva, Geneva"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CALIPHO Group, Swiss Institute of Bioinformatics, 1 Rue Michel-Servet, Geneva CH-1206, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"University of Geneva, Geneva","institution_ids":["https://openalex.org/I114457229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055843264","display_name":"Anne Gleizes","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Anne Gleizes","raw_affiliation_strings":["CALIPHO Group, Swiss Institute of Bioinformatics, 1 Rue Michel-Servet, Geneva CH-1206, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CALIPHO Group, Swiss Institute of Bioinformatics, 1 Rue Michel-Servet, Geneva CH-1206, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086411804","display_name":"Pierre-Andr\u00e9 Michel","orcid":"https://orcid.org/0000-0002-7023-1045"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Pierre-Andr\u00e9 Michel","raw_affiliation_strings":["CALIPHO Group, Swiss Institute of Bioinformatics, 1 Rue Michel-Servet, Geneva CH-1206, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CALIPHO Group, Swiss Institute of Bioinformatics, 1 Rue Michel-Servet, Geneva CH-1206, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069843378","display_name":"Amos Bairoch","orcid":"https://orcid.org/0000-0003-2826-6444"},"institutions":[{"id":"https://openalex.org/I114457229","display_name":"University of Geneva","ror":"https://ror.org/01swzsf04","country_code":"CH","type":"education","lineage":["https://openalex.org/I114457229"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Amos Bairoch","raw_affiliation_strings":["CALIPHO Group, Swiss Institute of Bioinformatics, 1 Rue Michel-Servet, Geneva CH-1206, Switzerland","University of Geneva, Geneva"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CALIPHO Group, Swiss Institute of Bioinformatics, 1 Rue Michel-Servet, Geneva CH-1206, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"University of Geneva, Geneva","institution_ids":["https://openalex.org/I114457229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014365246","display_name":"Pascale Gaudet","orcid":"https://orcid.org/0000-0003-1813-6857"},"institutions":[{"id":"https://openalex.org/I114457229","display_name":"University of Geneva","ror":"https://ror.org/01swzsf04","country_code":"CH","type":"education","lineage":["https://openalex.org/I114457229"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Pascale Gaudet","raw_affiliation_strings":["CALIPHO Group, Swiss Institute of Bioinformatics, 1 Rue Michel-Servet, Geneva CH-1206, Switzerland","University of Geneva, Geneva"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CALIPHO Group, Swiss Institute of Bioinformatics, 1 Rue Michel-Servet, Geneva CH-1206, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"University of Geneva, Geneva","institution_ids":["https://openalex.org/I114457229"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042384742","display_name":"Patrick Ruch","orcid":"https://orcid.org/0000-0002-3374-2962"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I4210088449","display_name":"HES-SO Gen\u00e8ve","ror":"https://ror.org/007gfwn20","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891","https://openalex.org/I4210088449"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Patrick Ruch","raw_affiliation_strings":["Information Science Department, BiTeM Group, HES-SO/HEG Gen\u00e8ve, 17 Rue de la Tambourine, Carouge CH-1227, Switzerland","SIB Text Mining, Swiss Institute of Bioinformatics, 17 Rue de la Tambourine, Carouge CH-1227, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Science Department, BiTeM Group, HES-SO/HEG Gen\u00e8ve, 17 Rue de la Tambourine, Carouge CH-1227, Switzerland","institution_ids":["https://openalex.org/I4210088449"]},{"raw_affiliation_string":"SIB Text Mining, Swiss Institute of Bioinformatics, 17 Rue de la Tambourine, Carouge CH-1227, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5014365246","https://openalex.org/A5042384742","https://openalex.org/A5049986775"],"corresponding_institution_ids":["https://openalex.org/I114457229","https://openalex.org/I12708293","https://openalex.org/I4210088449"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.6728,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.68973524,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"2017","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.7828382849693298},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6758517026901245},{"id":"https://openalex.org/keywords/triage","display_name":"Triage","score":0.670452356338501},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6358484625816345},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6127344965934753},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.5782846808433533},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5695061683654785},{"id":"https://openalex.org/keywords/prioritization","display_name":"Prioritization","score":0.5653620362281799},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5359863042831421},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.509206235408783},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.4914041757583618},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.4846492409706116},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4665769040584564},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.4516614079475403},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.434712290763855},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.37883538007736206},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2746732831001282},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.25692737102508545},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.15849223732948303},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1266043782234192},{"id":"https://openalex.org/keywords/process-management","display_name":"Process management","score":0.12230750918388367},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11147835850715637},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10324409604072571}],"concepts":[{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.7828382849693298},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6758517026901245},{"id":"https://openalex.org/C2777120189","wikidata":"https://www.wikidata.org/wiki/Q780067","display_name":"Triage","level":2,"score":0.670452356338501},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6358484625816345},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6127344965934753},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.5782846808433533},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5695061683654785},{"id":"https://openalex.org/C2777615720","wikidata":"https://www.wikidata.org/wiki/Q11888847","display_name":"Prioritization","level":2,"score":0.5653620362281799},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5359863042831421},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.509206235408783},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.4914041757583618},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.4846492409706116},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4665769040584564},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.4516614079475403},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.434712290763855},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.37883538007736206},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2746732831001282},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.25692737102508545},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.15849223732948303},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1266043782234192},{"id":"https://openalex.org/C195094911","wikidata":"https://www.wikidata.org/wiki/Q14167904","display_name":"Process management","level":1,"score":0.12230750918388367},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11147835850715637},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10324409604072571},{"id":"https://openalex.org/C194828623","wikidata":"https://www.wikidata.org/wiki/Q2861470","display_name":"Emergency medicine","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/bax040","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax040","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax040/19234641/bax040.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:29220432","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29220432","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:4361429","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5502361","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:arodes.hes-so.ch:2115","is_oa":false,"landing_page_url":"http://arodes.hes-so.ch/record/2115","pdf_url":null,"source":{"id":"https://openalex.org/S4306402432","display_name":"ArODES (HES-SO (https://www.hes-so.ch/))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210088449","host_organization_name":"HES-SO Gen\u00e8ve","host_organization_lineage":["https://openalex.org/I4210088449"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arodes.hes-so.ch/record/2115","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bax040","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax040","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax040/19234641/bax040.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6399999856948853,"id":"https://metadata.un.org/sdg/8","display_name":"Decent work and economic growth"}],"awards":[{"id":"https://openalex.org/G525758720","display_name":null,"funder_award_id":"SNF #153437","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"}],"funders":[{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2732651590.pdf"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W161282504","https://openalex.org/W172597201","https://openalex.org/W183866246","https://openalex.org/W1790194223","https://openalex.org/W1968927634","https://openalex.org/W1983453172","https://openalex.org/W1991224063","https://openalex.org/W1993119069","https://openalex.org/W1995286508","https://openalex.org/W1996143460","https://openalex.org/W2031772330","https://openalex.org/W2032685482","https://openalex.org/W2040610660","https://openalex.org/W2043255229","https://openalex.org/W2043909051","https://openalex.org/W2044420612","https://openalex.org/W2048623398","https://openalex.org/W2064030835","https://openalex.org/W2080096132","https://openalex.org/W2103017472","https://openalex.org/W2103308144","https://openalex.org/W2104768328","https://openalex.org/W2105783806","https://openalex.org/W2112466127","https://openalex.org/W2130832525","https://openalex.org/W2139259976","https://openalex.org/W2144133357","https://openalex.org/W2144276934","https://openalex.org/W2146630008","https://openalex.org/W2148083369","https://openalex.org/W2156235098","https://openalex.org/W2163585301","https://openalex.org/W2165106082","https://openalex.org/W2165428180","https://openalex.org/W2236952019","https://openalex.org/W2292103514","https://openalex.org/W2315579478","https://openalex.org/W2470124677","https://openalex.org/W2486678281","https://openalex.org/W2547366414","https://openalex.org/W2560310361","https://openalex.org/W2562810405","https://openalex.org/W2604823638","https://openalex.org/W4245751824","https://openalex.org/W4254630790","https://openalex.org/W6606496272","https://openalex.org/W6607048463","https://openalex.org/W6638082556","https://openalex.org/W6645896537"],"related_works":["https://openalex.org/W2098932404","https://openalex.org/W2129800387","https://openalex.org/W2080497949","https://openalex.org/W3040692138","https://openalex.org/W2397655851","https://openalex.org/W4287199895","https://openalex.org/W2964648167","https://openalex.org/W2156467546","https://openalex.org/W4306399392","https://openalex.org/W4297818780"],"abstract_inverted_index":{"Today,":[0],"molecular":[1,140],"biology":[2],"databases":[3],"are":[4,22],"the":[5,70,78,108,136,144,156,189,194,207,213,235,246,276,285,324,330,334,343,381],"cornerstone":[6],"of":[7,19,47,72,80,83,95,110,119,158,201,212,221,229,252,267,278,305,333,345,383],"knowledge":[8],"sharing":[9],"for":[10,139,151,240,248,342,353],"life":[11],"and":[12,17,51,89,97,177,245,259,350,361,386],"health":[13],"sciences.":[14],"The":[15,44,93,179,210],"curation":[16,36,60,79,377,382],"maintenance":[18],"these":[20,152,253],"resources":[21,181],"labour":[23],"intensive.":[24],"Although":[25],"text":[26],"mining":[27],"is":[28,338,370],"gaining":[29],"impetus":[30],"among":[31],"curators,":[32],"its":[33],"integration":[34,71],"in":[35,257,375],"workflow":[37],"has":[38],"not":[39,105],"yet":[40],"been":[41],"widely":[42],"adopted.":[43],"Swiss":[45],"Institute":[46],"Bioinformatics":[48],"Text":[49],"Mining":[50],"CALIPHO":[52,208],"groups":[53],"joined":[54],"forces":[55],"to":[56,76,169,175,231,238,274,284,300,323,328,372],"design":[57],"a":[58,100,166,199,219,263,279,295,302,310],"new":[59,167,180],"support":[61,77,232],"system":[62],"named":[63],"nextA5.":[64],"In":[65,161],"this":[66,162],"report,":[67,163],"we":[68,164],"explore":[69],"novel":[73],"triage":[74,145,214,336,374],"services":[75],"two":[81,227],"types":[82],"biological":[84,111],"data:":[85],"protein\u2013protein":[86],"interactions":[87],"(PPIs)":[88],"post-translational":[90],"modifications":[91],"(PTMs).":[92],"recognition":[94],"PPIs":[96,176,348,385],"PTMs":[98,356],"poses":[99],"special":[101],"challenge,":[102],"as":[103,135,319,380],"it":[104],"only":[106],"requires":[107,155],"identification":[109],"entities":[112],"(proteins":[113],"or":[114,124,321],"residues),":[115],"but":[116],"also":[117,308],"that":[118],"particular":[120,280],"relationships":[121,127],"(e.g.":[122],"binding":[123],"position).":[125],"These":[126,269],"cannot":[128],"be":[129],"described":[130],"with":[131,218,242,282,294,347,355,365],"onto-terminological":[132],"descriptors":[133,230,254],"such":[134,379],"Gene":[137],"Ontology":[138],"functions,":[141],"which":[142,314],"makes":[143],"task":[146],"more":[147],"challenging.":[148],"Prioritizing":[149],"papers":[150,241,346,354],"tasks":[153,378],"thus":[154,261],"development":[157],"different":[159],"approaches.":[160],"propose":[165],"method":[168],"prioritize":[170],"articles":[171],"containing":[172],"information":[173,349],"specific":[174,316],"PTMs.":[178,249,387],"(RESTful":[182],"APIs,":[183],"semantically":[184,264],"annotated":[185,205,223,265],"MEDLINE":[186,258,368],"library)":[187],"enrich":[188,239],"neXtA5":[190],"platform.":[191],"We":[192,225,307],"tuned":[193],"article":[195,281],"prioritization":[196,344],"model":[197],"on":[198],"set":[200,237],"100":[202],"proteins":[203],"previously":[204],"by":[206,340,351],"group.":[209],"effectiveness":[211,332],"service":[215,337],"was":[216,292],"tested":[217],"dataset":[220],"200":[222],"proteins.":[224],"defined":[226],"sets":[228],"automatic":[233],"triage:":[234],"first":[236],"PPI":[243],"data,":[244],"second":[247],"All":[250],"occurrences":[251],"were":[255,271],"marked-up":[256],"indexed,":[260],"constituting":[262],"version":[266],"MEDLINE.":[268],"annotations":[270],"then":[272],"used":[273],"estimate":[275],"relevance":[277,290],"respect":[283],"chosen":[286],"annotation":[287],"type.":[288],"This":[289],"score":[291],"combined":[293],"local":[296],"vector-space":[297],"search":[298,331],"engine":[299],"generate":[301],"ranked":[303],"list":[304],"PMIDs.":[306],"evaluated":[309],"query":[311,362],"refinement":[312,363],"strategy,":[313],"adds":[315],"keywords":[317],"(such":[318],"\u2018binds\u2019":[320],"\u2018interacts\u2019)":[322],"original":[325],"query.":[326],"Compared":[327],"PubMed,":[329],"nextA5":[335],"improved":[339],"190%":[341],"260%":[352],"information.":[357],"Combining":[358],"advanced":[359],"retrieval":[360],"strategies":[364],"automatically":[366],"enriched":[367],"contents":[369],"effective":[371],"improve":[373],"complex":[376],"protein":[384],"Database":[388],"URL:http://candy.hesge.ch/nextA5":[389]},"counts_by_year":[{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3}],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2025-10-10T00:00:00"}
