{"id":"https://openalex.org/W2595875793","doi":"https://doi.org/10.1093/database/bax012","title":"Strategies towards digital and semi-automated curation in RegulonDB","display_name":"Strategies towards digital and semi-automated curation in RegulonDB","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2595875793","doi":"https://doi.org/10.1093/database/bax012","mag":"2595875793","pmid":"https://pubmed.ncbi.nlm.nih.gov/28365731"},"language":"en","primary_location":{"id":"doi:10.1093/database/bax012","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax012","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/database/bax012","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025307528","display_name":"Fabio Rinaldi","orcid":"https://orcid.org/0000-0001-5718-5462"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]}],"countries":["CH","MX"],"is_corresponding":true,"raw_author_name":"Fabio Rinaldi","raw_affiliation_strings":["Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100, Mexico","Swiss Institute of Bioinformatics and Institute of Computational Linguistics, University of Zurich, Andreasstrasse 15, Zurich 8050, Switzerland"],"affiliations":[{"raw_affiliation_string":"Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100, Mexico","institution_ids":["https://openalex.org/I8961855"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics and Institute of Computational Linguistics, University of Zurich, Andreasstrasse 15, Zurich 8050, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I202697423"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004896711","display_name":"Oscar Lithgow","orcid":null},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":true,"raw_author_name":"Oscar Lithgow","raw_affiliation_strings":["Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033098879","display_name":"Socorro Gama\u2010Castro","orcid":"https://orcid.org/0000-0001-7708-5143"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Socorro Gama-Castro","raw_affiliation_strings":["Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086619875","display_name":"Hilda Solano","orcid":null},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Hilda Solano","raw_affiliation_strings":["Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110712788","display_name":"Alejandra L\u00f3pez-Fuentes","orcid":null},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Alejandra L\u00f3pez-Fuentes","raw_affiliation_strings":["Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069565054","display_name":"Luis Jos\u00e9 Mu\u00f1iz Rascado","orcid":null},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Luis Jos\u00e9 Mu\u00f1iz Rascado","raw_affiliation_strings":["Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089360167","display_name":"Cecilia Ishida-Guti\u00e9rrez","orcid":null},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Cecilia Ishida-Guti\u00e9rrez","raw_affiliation_strings":["Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086154618","display_name":"Carlos-Francisco M\u00e9ndez-Cruz","orcid":"https://orcid.org/0000-0002-2549-1614"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Carlos-Francisco M\u00e9ndez-Cruz","raw_affiliation_strings":["Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079232768","display_name":"Julio Collado\u2010Vides","orcid":"https://orcid.org/0000-0001-8780-7664"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Julio Collado-Vides","raw_affiliation_strings":["Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100, Mexico","institution_ids":["https://openalex.org/I8961855"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5004896711","https://openalex.org/A5025307528"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I202697423","https://openalex.org/I8961855"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":960,"currency":"EUR","value_usd":1035},"fwci":0.7858,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.70696448,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"2017","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.869925856590271},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8120496273040771},{"id":"https://openalex.org/keywords/digital-curation","display_name":"Digital curation","score":0.7213732004165649},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6025707721710205},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5660426616668701},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.5643339157104492},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5006363391876221},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.49354279041290283},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.47360801696777344},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.44701871275901794},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.42223963141441345},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3814983367919922},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.18721306324005127},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.139849454164505}],"concepts":[{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.869925856590271},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8120496273040771},{"id":"https://openalex.org/C2775953033","wikidata":"https://www.wikidata.org/wiki/Q5276060","display_name":"Digital curation","level":2,"score":0.7213732004165649},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6025707721710205},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5660426616668701},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.5643339157104492},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5006363391876221},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.49354279041290283},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.47360801696777344},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.44701871275901794},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.42223963141441345},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3814983367919922},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.18721306324005127},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.139849454164505},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018085","descriptor_name":"Regulon","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D018085","descriptor_name":"Regulon","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D018085","descriptor_name":"Regulon","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/database/bax012","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax012","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:28365731","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28365731","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmid:28605767","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28605767","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:www.zora.uzh.ch:147279","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Rinaldi, Fabio; Lithgow, Oscar; Gama-Castro, Socorro; Solano, Hilda; L\u00f3pez-Fuentes, Alejandra; Mu\u00f1iz Rascado, Luis Jos\u00e9; Ishida-Guti\u00e9rrez, Cecilia; M\u00e9ndez-Cruz, Carlos-Francisco; Collado-Vides, Julio  (2017). Strategies towards digital and semi-automated curation in RegulonDB.  Database, 2017(1):bax012.","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:europepmc.org:4323744","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5467572","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:europepmc.org:4323815","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC5467564","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5467564","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5467564","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"doi:10.5167/uzh-147279","is_oa":true,"landing_page_url":"https://doi.org/10.5167/uzh-147279","pdf_url":null,"source":{"id":"https://openalex.org/S7407051291","display_name":"Universit\u00e4t Z\u00fcrich, ZORA","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/database/bax012","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax012","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Decent work and economic growth","id":"https://metadata.un.org/sdg/8","score":0.6200000047683716}],"awards":[{"id":"https://openalex.org/G5391557682","display_name":null,"funder_award_id":"R01GM110597","funder_id":"https://openalex.org/F4320337349","funder_display_name":"NIH Office of the Director"},{"id":"https://openalex.org/G6169222452","display_name":null,"funder_award_id":"CR30I1_162758","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"}],"funders":[{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320337349","display_name":"NIH Office of the Director","ror":"https://ror.org/00fj8a872"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1974217788","https://openalex.org/W1984052055","https://openalex.org/W2001849860","https://openalex.org/W2033031463","https://openalex.org/W2054331129","https://openalex.org/W2057419867","https://openalex.org/W2069024774","https://openalex.org/W2076632311","https://openalex.org/W2077612078","https://openalex.org/W2081580037","https://openalex.org/W2091803989","https://openalex.org/W2112271889","https://openalex.org/W2118640842","https://openalex.org/W2121365413","https://openalex.org/W2127014487","https://openalex.org/W2129522786","https://openalex.org/W2134701031","https://openalex.org/W2135455794","https://openalex.org/W2145383760","https://openalex.org/W2147641929","https://openalex.org/W2166256097","https://openalex.org/W2170806980","https://openalex.org/W2606749325","https://openalex.org/W6679020054","https://openalex.org/W6682225794"],"related_works":["https://openalex.org/W2400390830","https://openalex.org/W2598248896","https://openalex.org/W2907605431","https://openalex.org/W842882028","https://openalex.org/W2138555252","https://openalex.org/W2807479512","https://openalex.org/W2277259138","https://openalex.org/W3135458263","https://openalex.org/W4231012597","https://openalex.org/W3200944274"],"abstract_inverted_index":{"Experimentally":[0],"generated":[1],"biological":[2],"information":[3,22],"needs":[4,149],"to":[5,12,31,50,55,102,106,125,130,150,169,199],"be":[6,151,170],"organized":[7],"and":[8,42,82,188],"structured":[9],"in":[10,74,175],"order":[11],"become":[13],"meaningful":[14],"knowledge.":[15],"However,":[16],"the":[17,58,68,75,79,85,89,92,117,126,144,164,176,180,207],"rate":[18],"at":[19],"which":[20,112],"new":[21,34],"is":[23,100,172],"being":[24,173],"published":[25],"makes":[26],"manual":[27,211],"curation":[28,35,76,118,204],"increasingly":[29],"unable":[30],"cope.":[32],"Devising":[33],"strategies":[36],"that":[37,148],"leverage":[38],"upon":[39],"data":[40],"mining":[41,72],"text":[43,71,147],"analysis":[44],"is,":[45],"therefore,":[46],"a":[47,95,107,131,154,201],"promising":[48],"avenue":[49],"help":[51],"life":[52],"science":[53],"databases":[54],"cope":[56],"with":[57,206],"deluge":[59],"of":[60,70,78,91,109,140,146,157,167,185],"novel":[61],"information.":[62],"In":[63],"this":[64],"article,":[65],"we":[66],"describe":[67],"integration":[69],"technologies":[73],"pipeline":[77],"RegulonDB":[80],"database,":[81],"discuss":[83],"how":[84],"process":[86,205],"can":[87,134],"enhance":[88],"productivity":[90],"curators.":[93],"Specifically,":[94],"named":[96],"entity":[97],"recognition":[98],"approach":[99],"used":[101],"pre-annotate":[103],"terms":[104],"referring":[105],"set":[108],"domain":[110,190],"entities":[111],"are":[113,123,195],"potentially":[114],"relevant":[115],"for":[116],"process.":[119],"The":[120],"annotated":[121],"documents":[122],"presented":[124],"curator,":[127],"who,":[128],"thanks":[129],"custom-designed":[132],"interface,":[133],"select":[135],"sentences":[136,162],"containing":[137],"specific":[138],"types":[139],"entities,":[141],"thus":[142],"restricting":[143],"amount":[145],"inspected.":[152],"Additionally,":[153],"module":[155,181],"capable":[156],"computing":[158],"semantic":[159],"similarity":[160],"between":[161],"across":[163],"entire":[165],"collection":[166],"articles":[168,187],"curated":[171],"integrated":[174],"system.":[177],"We":[178],"tested":[179],"using":[182],"three":[183],"sets":[184],"scientific":[186],"six":[189],"experts.":[191],"All":[192],"these":[193],"improvements":[194],"gradually":[196],"enabling":[197],"us":[198],"obtain":[200],"high":[202],"throughput":[203],"same":[208],"quality":[209],"as":[210],"curation.":[212]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2017-03-23T00:00:00"}
