{"id":"https://openalex.org/W2594820345","doi":"https://doi.org/10.1093/database/bax010","title":"The \u2018straight mouse\u2019: defining anatomical axes in 3D embryo models","display_name":"The \u2018straight mouse\u2019: defining anatomical axes in 3D embryo models","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2594820345","doi":"https://doi.org/10.1093/database/bax010","mag":"2594820345","pmid":"https://pubmed.ncbi.nlm.nih.gov/28365728"},"language":"en","primary_location":{"id":"doi:10.1093/database/bax010","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax010","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax010/19230784/bax010.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax010/19230784/bax010.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043488880","display_name":"Chris Armit","orcid":"https://orcid.org/0000-0002-9952-8141"},"institutions":[{"id":"https://openalex.org/I3130638677","display_name":"Edinburgh College","ror":"https://ror.org/04vpa6h32","country_code":"GB","type":"education","lineage":["https://openalex.org/I3130638677"]},{"id":"https://openalex.org/I4210158898","display_name":"Institute of Genetics and Cancer","ror":"https://ror.org/05hygey35","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210158898","https://openalex.org/I90344618","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Chris Armit","raw_affiliation_strings":["MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh College of Medicine and Veterinary Medicine, Edinburgh, Scotland EH4 2XU, UK and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh College of Medicine and Veterinary Medicine, Edinburgh, Scotland EH4 2XU, UK and","institution_ids":["https://openalex.org/I3130638677","https://openalex.org/I4210158898","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074966091","display_name":"Bill Hill","orcid":"https://orcid.org/0000-0002-8988-0627"},"institutions":[{"id":"https://openalex.org/I3130638677","display_name":"Edinburgh College","ror":"https://ror.org/04vpa6h32","country_code":"GB","type":"education","lineage":["https://openalex.org/I3130638677"]},{"id":"https://openalex.org/I4210158898","display_name":"Institute of Genetics and Cancer","ror":"https://ror.org/05hygey35","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210158898","https://openalex.org/I90344618","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Bill Hill","raw_affiliation_strings":["MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh College of Medicine and Veterinary Medicine, Edinburgh, Scotland EH4 2XU, UK and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh College of Medicine and Veterinary Medicine, Edinburgh, Scotland EH4 2XU, UK and","institution_ids":["https://openalex.org/I3130638677","https://openalex.org/I4210158898","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064980470","display_name":"Shanmugasundaram Venkataraman","orcid":"https://orcid.org/0000-0002-3200-2698"},"institutions":[{"id":"https://openalex.org/I3130638677","display_name":"Edinburgh College","ror":"https://ror.org/04vpa6h32","country_code":"GB","type":"education","lineage":["https://openalex.org/I3130638677"]},{"id":"https://openalex.org/I4210158898","display_name":"Institute of Genetics and Cancer","ror":"https://ror.org/05hygey35","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210158898","https://openalex.org/I90344618","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"S. Venkataraman","raw_affiliation_strings":["MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh College of Medicine and Veterinary Medicine, Edinburgh, Scotland EH4 2XU, UK and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh College of Medicine and Veterinary Medicine, Edinburgh, Scotland EH4 2XU, UK and","institution_ids":["https://openalex.org/I3130638677","https://openalex.org/I4210158898","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032536651","display_name":"Kenneth McLeod","orcid":"https://orcid.org/0000-0002-2006-6619"},"institutions":[{"id":"https://openalex.org/I32062511","display_name":"Heriot-Watt University","ror":"https://ror.org/04mghma93","country_code":"GB","type":"education","lineage":["https://openalex.org/I32062511"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kenneth McLeod","raw_affiliation_strings":["Department of Computer Science, Heriot-Watt University, Edinburgh, Scotland EH14 4AS, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Heriot-Watt University, Edinburgh, Scotland EH14 4AS, UK","institution_ids":["https://openalex.org/I32062511"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079735260","display_name":"Albert Burger","orcid":"https://orcid.org/0000-0002-5492-8635"},"institutions":[{"id":"https://openalex.org/I32062511","display_name":"Heriot-Watt University","ror":"https://ror.org/04mghma93","country_code":"GB","type":"education","lineage":["https://openalex.org/I32062511"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Albert Burger","raw_affiliation_strings":["Department of Computer Science, Heriot-Watt University, Edinburgh, Scotland EH14 4AS, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Heriot-Watt University, Edinburgh, Scotland EH14 4AS, UK","institution_ids":["https://openalex.org/I32062511"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057893272","display_name":"Richard Baldock","orcid":"https://orcid.org/0000-0003-0332-6877"},"institutions":[{"id":"https://openalex.org/I3130638677","display_name":"Edinburgh College","ror":"https://ror.org/04vpa6h32","country_code":"GB","type":"education","lineage":["https://openalex.org/I3130638677"]},{"id":"https://openalex.org/I4210158898","display_name":"Institute of Genetics and Cancer","ror":"https://ror.org/05hygey35","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210158898","https://openalex.org/I90344618","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Richard Baldock","raw_affiliation_strings":["MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh College of Medicine and Veterinary Medicine, Edinburgh, Scotland EH4 2XU, UK and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh College of Medicine and Veterinary Medicine, Edinburgh, Scotland EH4 2XU, UK and","institution_ids":["https://openalex.org/I3130638677","https://openalex.org/I4210158898","https://openalex.org/I98677209"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5043488880"],"corresponding_institution_ids":["https://openalex.org/I3130638677","https://openalex.org/I4210158898","https://openalex.org/I98677209"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1095,"currency":"EUR","value_usd":1180},"fwci":0.0,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.01952783,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"2017","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10268","display_name":"Developmental Biology and Gene Regulation","score":0.16349999606609344,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10268","display_name":"Developmental Biology and Gene Regulation","score":0.16349999606609344,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.1535000056028366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10505","display_name":"Pluripotent Stem Cells Research","score":0.11460000276565552,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/embryo","display_name":"Embryo","score":0.6453157067298889},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5077841877937317},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4115450084209442},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3589973449707031},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3510677218437195},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.3405284583568573},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3297855854034424},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.18447548151016235}],"concepts":[{"id":"https://openalex.org/C196843134","wikidata":"https://www.wikidata.org/wiki/Q33196","display_name":"Embryo","level":2,"score":0.6453157067298889},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5077841877937317},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4115450084209442},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3589973449707031},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3510677218437195},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.3405284583568573},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3297855854034424},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.18447548151016235}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004622","descriptor_name":"Embryo, Mammalian","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D004622","descriptor_name":"Embryo, Mammalian","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D004622","descriptor_name":"Embryo, Mammalian","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D004622","descriptor_name":"Embryo, Mammalian","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D004622","descriptor_name":"Embryo, Mammalian","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D004622","descriptor_name":"Embryo, Mammalian","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D018507","descriptor_name":"Gene Expression Regulation, Developmental","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D018507","descriptor_name":"Gene Expression Regulation, Developmental","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D018507","descriptor_name":"Gene Expression Regulation, Developmental","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D019521","descriptor_name":"Body Patterning","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D019521","descriptor_name":"Body Patterning","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D019521","descriptor_name":"Body Patterning","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/bax010","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax010","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax010/19230784/bax010.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:28365728","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28365728","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pure.ed.ac.uk:openaire/f5e4e0a7-b891-4be6-87d3-26c07990c3dd","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/f5e4e0a7-b891-4be6-87d3-26c07990c3dd","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Armit, C, Hill, B, Venkataraman, S, Mcleod, K, Burger, A & Baldock, R 2017, 'The \u2018straight mouse\u2019: defining anatomical axes in 3D embryo models', Database: The Journal of Biological Databases and Curation, vol. 2017, no. 1, bax010. https://doi.org/10.1093/database/bax010","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:europepmc.org:4323756","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5467569","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pure.ed.ac.uk:publications/f5e4e0a7-b891-4be6-87d3-26c07990c3dd","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/portal/en/publications/the-straight-mouse-defining-anatomical-axes-in-3d-embryo-models(f5e4e0a7-b891-4be6-87d3-26c07990c3dd).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Armit, C, Hill, B, Venkataraman, S, Mcleod, K, Burger, A & Baldock, R 2017, 'The \u2018straight mouse\u2019: defining anatomical axes in 3D embryo models', Database: The Journal of Biological Databases and Curation, vol. 2017, no. 1, bax010. https://doi.org/10.1093/database/bax010","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/database/bax010","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax010","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax010/19230784/bax010.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G161733502","display_name":"ePhenotype - Visual Analytics for Integrated Large Scale Gene-Expression and Phenotype Data","funder_award_id":"BB/N023307/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G2570852897","display_name":null,"funder_award_id":"BB/K019937/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4516194718","display_name":"PhenoImageShare - a phenotype image annotation, sharing and discovery platform","funder_award_id":"BB/K020021/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4733851553","display_name":"PhenoImageShare - a phenotype image annotation, sharing and discovery platform","funder_award_id":"BB/K019937/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5478317585","display_name":null,"funder_award_id":"BB/K020021/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6759749603","display_name":null,"funder_award_id":"BB/N023307/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2594820345.pdf","grobid_xml":"https://content.openalex.org/works/W2594820345.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W149161115","https://openalex.org/W201313954","https://openalex.org/W249845531","https://openalex.org/W636264593","https://openalex.org/W1416102224","https://openalex.org/W1835820463","https://openalex.org/W1964467446","https://openalex.org/W1980878261","https://openalex.org/W1988418842","https://openalex.org/W2023955150","https://openalex.org/W2040557030","https://openalex.org/W2053652108","https://openalex.org/W2064412659","https://openalex.org/W2069320563","https://openalex.org/W2077802746","https://openalex.org/W2089986416","https://openalex.org/W2100983000","https://openalex.org/W2102345821","https://openalex.org/W2103201926","https://openalex.org/W2123335871","https://openalex.org/W2126867710","https://openalex.org/W2131793314","https://openalex.org/W2131918846","https://openalex.org/W2132225262","https://openalex.org/W2137362149","https://openalex.org/W2145060259","https://openalex.org/W2163815564","https://openalex.org/W4242044878","https://openalex.org/W6608204779"],"related_works":["https://openalex.org/W2320619678","https://openalex.org/W2394138874","https://openalex.org/W2027569400","https://openalex.org/W2417550541","https://openalex.org/W2059532414","https://openalex.org/W2409299309","https://openalex.org/W3165477948","https://openalex.org/W2016963081","https://openalex.org/W2366111318","https://openalex.org/W2031480264"],"abstract_inverted_index":{"A":[0],"primary":[1],"objective":[2],"of":[3,13,42,47,59,86,122,154,164,181],"the":[4,66,87,109,120,128,146,152,161,179],"eMouseAtlas":[5],"Project":[6],"is":[7],"to":[8,19,65,106],"enable":[9,80],"3D":[10,22,40,111],"spatial":[11,162],"mapping":[12],"whole":[14],"embryo":[15,135,148,189],"gene":[16,173,193],"expression":[17,174,194],"data":[18,88,96,191],"capture":[20],"complex":[21,142,186],"patterns":[23,101],"for":[24],"indexing,":[25],"visualization,":[26],"cross-comparison":[27],"and":[28,75,84,93,176,195],"analysis.":[29],"For":[30],"this":[31,155,182],"we":[32,55,177],"have":[33],"developed":[34],"a":[35,57,123,141],"spatio-temporal":[36],"framework":[37],"based":[38],"on":[39],"models":[41],"embryos":[43],"at":[44],"different":[45],"stages":[46],"development":[48],"coupled":[49],"with":[50,89],"an":[51],"anatomical":[52,67,115,129,156],"ontology.":[53],"Here":[54],"introduce":[56],"method":[58],"defining":[60],"coordinate":[61,112,157],"axes":[62],"that":[63,98,102],"correspond":[64],"or":[68],"biologically":[69,90],"relevant":[70,91],"anterior-posterior":[71],"(A-P),":[72],"dorsal-ventral":[73],"(D-V)":[74],"left-right":[76],"(L-R)":[77],"directions.":[78],"These":[79,114],"more":[81],"sophisticated":[82],"query":[83],"analysis":[85],"associations,":[92],"provide":[94],"novel":[95],"visualizations":[97],"can":[99],"reveal":[100],"are":[103,117,131],"otherwise":[104],"difficult":[105],"detect":[107],"in":[108,159,184],"standard":[110,147],"space.":[113],"coordinates":[116,130],"defined":[118],"using":[119],"concept":[121],"'straight":[124],"mouse-embryo'":[125],"within":[126],"which":[127],"Cartesian.":[132],"The":[133],"straight":[134],"model":[136],"has":[137],"been":[138],"mapped":[139,166],"via":[140],"non-linear":[143],"transform":[144],"onto":[145],"model.":[149],"We":[150],"explore":[151],"utility":[153],"system":[158],"elucidating":[160],"relationship":[163],"spatially":[165],"embryonic":[167],"'":[168,172],"Fibroblast":[169],"growth":[170],"factor":[171],"patterns,":[175],"discuss":[178],"importance":[180],"technology":[183],"summarizing":[185],"multimodal":[187],"mouse":[188],"image":[190],"from":[192],"anatomy":[196],"studies.":[197],"Database":[198],"URL:":[199],"www.emouseatlas.org.":[200]},"counts_by_year":[{"year":2022,"cited_by_count":1}],"updated_date":"2026-08-14T07:06:38.338062","created_date":"2025-10-10T00:00:00"}
