{"id":"https://openalex.org/W2595291219","doi":"https://doi.org/10.1093/database/bax006","title":"Biocuration in the structure\u2013function linkage database: the anatomy of a superfamily","display_name":"Biocuration in the structure\u2013function linkage database: the anatomy of a superfamily","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2595291219","doi":"https://doi.org/10.1093/database/bax006","mag":"2595291219","pmid":"https://pubmed.ncbi.nlm.nih.gov/28365730"},"language":"en","primary_location":{"id":"doi:10.1093/database/bax006","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax006","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax006/19230456/bax006.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax006/19230456/bax006.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087551864","display_name":"Gemma L. Holliday","orcid":"https://orcid.org/0000-0002-6731-6398"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Gemma L. Holliday","raw_affiliation_strings":["Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA 94143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA 94143, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111814314","display_name":"Shoshana Brown","orcid":null},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shoshana D. Brown","raw_affiliation_strings":["Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA 94143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA 94143, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088580694","display_name":"Eyal Akiva","orcid":"https://orcid.org/0000-0001-6074-8609"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eyal Akiva","raw_affiliation_strings":["Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA 94143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA 94143, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083616181","display_name":"David Mischel","orcid":null},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Mischel","raw_affiliation_strings":["Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA 94143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA 94143, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010288284","display_name":"Michael Hicks","orcid":"https://orcid.org/0000-0003-1045-2660"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]},{"id":"https://openalex.org/I4210128647","display_name":"Human Longevity (United States)","ror":"https://ror.org/03n53gr48","country_code":"US","type":"company","lineage":["https://openalex.org/I4210128647"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael A. Hicks","raw_affiliation_strings":["Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA 94143, USA","Human Longevity, Inc, San Diego, CA 92121, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA 94143, USA","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Human Longevity, Inc, San Diego, CA 92121, USA","institution_ids":["https://openalex.org/I4210128647"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054399637","display_name":"John H. Morris","orcid":"https://orcid.org/0000-0003-0290-7979"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John H. Morris","raw_affiliation_strings":["Department of Pharmaceutical Chemistry, School of Pharmacy, University of California, San Francisco, CA 94143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, School of Pharmacy, University of California, San Francisco, CA 94143, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111598904","display_name":"Conrad C. Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Conrad C. Huang","raw_affiliation_strings":["Department of Pharmaceutical Chemistry, School of Pharmacy, University of California, San Francisco, CA 94143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, School of Pharmacy, University of California, San Francisco, CA 94143, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109200358","display_name":"Elaine C. Meng","orcid":null},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elaine C. Meng","raw_affiliation_strings":["Department of Pharmaceutical Chemistry, School of Pharmacy, University of California, San Francisco, CA 94143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, School of Pharmacy, University of California, San Francisco, CA 94143, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037746177","display_name":"Scott C.\u2010H. Pegg","orcid":null},"institutions":[{"id":"https://openalex.org/I1321430492","display_name":"Gladstone Institutes","ror":"https://ror.org/038321296","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1321430492"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott C.-H. Pegg","raw_affiliation_strings":["Gladstone Institutes, San Francisco, CA 94158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Gladstone Institutes, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I1321430492"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086093811","display_name":"Thomas E. Ferrin","orcid":"https://orcid.org/0000-0001-6227-0637"},"institutions":[{"id":"https://openalex.org/I103922791","display_name":"QB3","ror":"https://ror.org/04n1n3n22","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I103922791","https://openalex.org/I180670191","https://openalex.org/I185103710","https://openalex.org/I95457486"]},{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas E. Ferrin","raw_affiliation_strings":["California Institute for Quantitative Biosciences, University of California, San Francisco, CA 94158, USA","Department of Pharmaceutical Chemistry, School of Pharmacy, University of California, San Francisco, CA 94143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"California Institute for Quantitative Biosciences, University of California, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I103922791","https://openalex.org/I180670191"]},{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, School of Pharmacy, University of California, San Francisco, CA 94143, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020002876","display_name":"Patricia C. Babbitt","orcid":"https://orcid.org/0000-0003-0375-9015"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]},{"id":"https://openalex.org/I103922791","display_name":"QB3","ror":"https://ror.org/04n1n3n22","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I103922791","https://openalex.org/I180670191","https://openalex.org/I185103710","https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Patricia C. Babbitt","raw_affiliation_strings":["California Institute for Quantitative Biosciences, University of California, San Francisco, CA 94158, USA","Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA 94143, USA","Department of Pharmaceutical Chemistry, School of Pharmacy, University of California, San Francisco, CA 94143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"California Institute for Quantitative Biosciences, University of California, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I103922791","https://openalex.org/I180670191"]},{"raw_affiliation_string":"Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA 94143, USA","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, School of Pharmacy, University of California, San Francisco, CA 94143, USA","institution_ids":["https://openalex.org/I180670191"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5020002876","https://openalex.org/A5087551864"],"corresponding_institution_ids":["https://openalex.org/I103922791","https://openalex.org/I180670191"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.4069,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.82652318,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"2017","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.30630001425743103,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.30630001425743103,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.17599999904632568,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.1363999992609024,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/superfamily","display_name":"SUPERFAMILY","score":0.7142968773841858},{"id":"https://openalex.org/keywords/linkage","display_name":"Linkage (software)","score":0.6939964890480042},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5717234015464783},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.46624842286109924},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.46543043851852417},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.45449841022491455},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3884413242340088},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38348662853240967},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.36819958686828613},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21849003434181213},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10347411036491394}],"concepts":[{"id":"https://openalex.org/C92028520","wikidata":"https://www.wikidata.org/wiki/Q7395025","display_name":"SUPERFAMILY","level":3,"score":0.7142968773841858},{"id":"https://openalex.org/C31266012","wikidata":"https://www.wikidata.org/wiki/Q6554340","display_name":"Linkage (software)","level":3,"score":0.6939964890480042},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5717234015464783},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.46624842286109924},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.46543043851852417},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45449841022491455},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3884413242340088},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38348662853240967},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.36819958686828613},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21849003434181213},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10347411036491394}],"mesh":[{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":10,"locations":[{"id":"doi:10.1093/database/bax006","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax006","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax006/19230456/bax006.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:28365730","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28365730","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmid:28605775","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28605775","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt2jx3w1dr","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/2jx3w1dr","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database : the journal of biological databases and curation, vol 2017, iss 1","raw_type":"article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt8r2157bd","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/8r2157bd","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4323814","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC5467563","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5467548","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5467548","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5467563","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5467563","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"pmh:qt2jx3w1dr","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/2jx3w1dr","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Holliday, GL; Brown, SD; Akiva, E; Mischel, D; Hicks, MA; Morris, JH; \u00c2\u00a0et al.(2017). Biocuration in the structure-function linkage database: the anatomy of a superfamily. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. doi: 10.1093/database/bax006. UC San Francisco: Retrieved from: http://www.escholarship.org/uc/item/2jx3w1dr","raw_type":"article"},{"id":"doi:10.25504/fairsharing.9y3gv0","is_oa":true,"landing_page_url":"https://doi.org/10.25504/fairsharing.9y3gv0","pdf_url":null,"source":{"id":"https://openalex.org/S7407053452","display_name":"FAIRsharing.org","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1093/database/bax006","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bax006","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax006/19230456/bax006.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1540984438","display_name":null,"funder_award_id":"P41 GM103311","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G1611944386","display_name":null,"funder_award_id":"DBI-1356193","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G182692790","display_name":null,"funder_award_id":"P01GM07790","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G353519045","display_name":null,"funder_award_id":"P01 GM071790","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G3645303490","display_name":null,"funder_award_id":"T32 GM007790","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4112596970","display_name":null,"funder_award_id":"DBI-0640476","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4572455399","display_name":null,"funder_award_id":"P41GM103311","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4909545397","display_name":null,"funder_award_id":"DBI-0234768","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5305597333","display_name":null,"funder_award_id":"R01GM60595","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G597898291","display_name":null,"funder_award_id":"U54GM093342","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6071620016","display_name":null,"funder_award_id":"U54 GM093342","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6715562766","display_name":null,"funder_award_id":"R01 GM060595","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2595291219.pdf","grobid_xml":"https://content.openalex.org/works/W2595291219.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W1775447850","https://openalex.org/W1975325738","https://openalex.org/W1975738628","https://openalex.org/W1976325156","https://openalex.org/W1976881268","https://openalex.org/W1987370810","https://openalex.org/W1987819535","https://openalex.org/W1989840001","https://openalex.org/W1995413875","https://openalex.org/W1997608219","https://openalex.org/W1998238795","https://openalex.org/W2011025549","https://openalex.org/W2016950608","https://openalex.org/W2024708232","https://openalex.org/W2025020367","https://openalex.org/W2027542060","https://openalex.org/W2036696353","https://openalex.org/W2047423056","https://openalex.org/W2060797027","https://openalex.org/W2070818602","https://openalex.org/W2072854916","https://openalex.org/W2087903152","https://openalex.org/W2098770192","https://openalex.org/W2102245393","https://openalex.org/W2106383137","https://openalex.org/W2108984616","https://openalex.org/W2110596761","https://openalex.org/W2112492958","https://openalex.org/W2113561798","https://openalex.org/W2120358246","https://openalex.org/W2128312954","https://openalex.org/W2128653811","https://openalex.org/W2132629607","https://openalex.org/W2135152200","https://openalex.org/W2142428670","https://openalex.org/W2142678478","https://openalex.org/W2143250705","https://openalex.org/W2143322328","https://openalex.org/W2145661853","https://openalex.org/W2146225611","https://openalex.org/W2147526198","https://openalex.org/W2149272482","https://openalex.org/W2153117453","https://openalex.org/W2154802584","https://openalex.org/W2155142785","https://openalex.org/W2155260111","https://openalex.org/W2162831725","https://openalex.org/W2164461702","https://openalex.org/W2169059428","https://openalex.org/W2169440065","https://openalex.org/W2173732482","https://openalex.org/W2223549218","https://openalex.org/W2237697516","https://openalex.org/W2335442043","https://openalex.org/W2413772068","https://openalex.org/W2414307244","https://openalex.org/W2485730515","https://openalex.org/W2557496587","https://openalex.org/W2595291219","https://openalex.org/W2739999456","https://openalex.org/W2786774014","https://openalex.org/W4242729757","https://openalex.org/W4247927165","https://openalex.org/W6668827364"],"related_works":["https://openalex.org/W4236854317","https://openalex.org/W573590566","https://openalex.org/W4239797724","https://openalex.org/W4255814672","https://openalex.org/W1846470156","https://openalex.org/W3169816335","https://openalex.org/W1969733451","https://openalex.org/W2756072254","https://openalex.org/W2041009285","https://openalex.org/W2120852229"],"abstract_inverted_index":{"With":[0],"ever-increasing":[1],"amounts":[2],"of":[3,45,77],"sequence":[4,13],"data":[5],"available":[6],"in":[7,19,35,68],"both":[8],"the":[9,29,36,46,51,54,89,94,105,115,122,126],"primary":[10],"literature":[11],"and":[12,32,81,111,117],"repositories,":[14],"there":[15],"is":[16,93,118],"a":[17,24],"bottleneck":[18],"annotating":[20],"molecular":[21],"function":[22,80,112],"to":[23,41,58,103,120],"sequence.":[25],"This":[26],"article":[27],"describes":[28],"biocuration":[30,123],"process":[31],"methods":[33],"used":[34,119],"structure-function":[37],"linkage":[38],"database":[39],"(SFLD)":[40],"help":[42],"address":[43],"some":[44],"challenges.":[47],"We":[48],"discuss":[49],"how":[50],"hierarchy":[52],"within":[53,125],"SFLD":[55,116],"allows":[56],"us":[57],"infer":[59],"detailed":[60],"functional":[61],"properties":[62],"for":[63],"functionally":[64],"diverse":[65],"enzyme":[66,108],"superfamilies":[67],"which":[69,99],"all":[70],"members":[71],"are":[72],"homologous,":[73],"conserve":[74],"an":[75],"aspect":[76],"their":[78],"chemical":[79],"have":[82],"associated":[83],"conserved":[84],"structural":[85],"features":[86],"that":[87,113],"enable":[88],"chemistry.":[90],"Also":[91],"presented":[92],"Enzyme":[95],"Structure-Function":[96],"Ontology":[97],"(ESFO),":[98],"has":[100],"been":[101],"designed":[102],"capture":[104],"relationships":[106],"between":[107],"sequence,":[109],"structure":[110],"underlie":[114],"guide":[121],"processes":[124],"SFLD.":[127],"Database":[128],"URL:":[129],"http://sfld.rbvi.ucsf.edu/.":[130]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2}],"updated_date":"2026-07-01T08:55:40.977307","created_date":"2017-03-23T00:00:00"}
