{"id":"https://openalex.org/W2568859793","doi":"https://doi.org/10.1093/database/baw160","title":"FirebrowseR: an R client to the Broad Institute\u2019s Firehose Pipeline","display_name":"FirebrowseR: an R client to the Broad Institute\u2019s Firehose Pipeline","publication_year":2016,"publication_date":"2016-11-11","ids":{"openalex":"https://openalex.org/W2568859793","doi":"https://doi.org/10.1093/database/baw160","mag":"2568859793","pmid":"https://pubmed.ncbi.nlm.nih.gov/28062517"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw160","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw160","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw160/19228825/baw160.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw160/19228825/baw160.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039675166","display_name":"Mario C. Deng","orcid":"https://orcid.org/0000-0002-5202-3816"},"institutions":[{"id":"https://openalex.org/I4210128097","display_name":"Research Center Borstel - Leibniz Lung Center","ror":"https://ror.org/036ragn25","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210128097"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Mario Deng","raw_affiliation_strings":["Pathology of the University Medical Center Schleswig-Holstein, Campus Luebeck and the Research Center Borstel, Leibniz Center for Medicine and Biosciences, 23538 Luebeck and 23845 Borstel, Germany"],"affiliations":[{"raw_affiliation_string":"Pathology of the University Medical Center Schleswig-Holstein, Campus Luebeck and the Research Center Borstel, Leibniz Center for Medicine and Biosciences, 23538 Luebeck and 23845 Borstel, Germany","institution_ids":["https://openalex.org/I4210128097"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086985238","display_name":"Johannes Br\u00e4gelmann","orcid":"https://orcid.org/0000-0002-1306-2169"},"institutions":[{"id":"https://openalex.org/I4210153755","display_name":"University Hospital Cologne","ror":"https://ror.org/05mxhda18","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210153755"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Johannes Br\u00e4gelmann","raw_affiliation_strings":["Molecular Pathology & Department of Translational Genomics, University Hospital Cologne, Weyertal 115b, Cologne, 50931, Germany"],"affiliations":[{"raw_affiliation_string":"Molecular Pathology & Department of Translational Genomics, University Hospital Cologne, Weyertal 115b, Cologne, 50931, Germany","institution_ids":["https://openalex.org/I4210153755"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054668613","display_name":"Ivan Kryukov","orcid":null},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]},{"id":"https://openalex.org/I2802127220","display_name":"Alberta Children's Hospital","ror":"https://ror.org/00sx29x36","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2802127220"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ivan Kryukov","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology and Alberta Children's Hospital Research Institute Calgary Biochemistry and Molecular Biology Doctoral Program in Bioinformatics, University of Calgary, Cumming School of Medicine, Alberta, Canada","Department of Biochemistry and Molecular Biology and Alberta Children\u2019s Hospital Research Institute Calgary Biochemistry and Molecular Biology Doctoral Program in Bioinformatics, University of Calgary, Cumming School of Medicine, Alberta, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology and Alberta Children's Hospital Research Institute Calgary Biochemistry and Molecular Biology Doctoral Program in Bioinformatics, University of Calgary, Cumming School of Medicine, Alberta, Canada","institution_ids":[]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology and Alberta Children\u2019s Hospital Research Institute Calgary Biochemistry and Molecular Biology Doctoral Program in Bioinformatics, University of Calgary, Cumming School of Medicine, Alberta, Canada","institution_ids":["https://openalex.org/I2802127220","https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019178142","display_name":"Nuno Saraiva-Agostinho","orcid":"https://orcid.org/0000-0002-5549-105X"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Nuno Saraiva-Agostinho","raw_affiliation_strings":["Departamento de Inform\u00e1tica, Faculdade de Ci\u00eancias, Universidade de Lisboa, 1749-016 Lisboa, Portugal","Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, 1649-028 Lisboa, Portugal and"],"affiliations":[{"raw_affiliation_string":"Departamento de Inform\u00e1tica, Faculdade de Ci\u00eancias, Universidade de Lisboa, 1749-016 Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]},{"raw_affiliation_string":"Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, 1649-028 Lisboa, Portugal and","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068738028","display_name":"Sven Perner","orcid":"https://orcid.org/0000-0002-0449-8462"},"institutions":[{"id":"https://openalex.org/I4210128097","display_name":"Research Center Borstel - Leibniz Lung Center","ror":"https://ror.org/036ragn25","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210128097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sven Perner","raw_affiliation_strings":["Pathology of the University Medical Center Schleswig-Holstein, Campus Luebeck and the Research Center Borstel, Leibniz Center for Medicine and Biosciences, 23538 Luebeck and 23845 Borstel, Germany"],"affiliations":[{"raw_affiliation_string":"Pathology of the University Medical Center Schleswig-Holstein, Campus Luebeck and the Research Center Borstel, Leibniz Center for Medicine and Biosciences, 23538 Luebeck and 23845 Borstel, Germany","institution_ids":["https://openalex.org/I4210128097"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5039675166"],"corresponding_institution_ids":["https://openalex.org/I4210128097"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":5.927,"has_fulltext":true,"cited_by_count":223,"citation_normalized_percentile":{"value":0.96702143,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"2017","issue":null,"first_page":"baw160","last_page":"baw160"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8168947696685791},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7866495847702026},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7203018069267273},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.614661693572998},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.5475004315376282},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5454105734825134},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5365806221961975},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5359194278717041},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5081145763397217},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.47570309042930603},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4528248906135559},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.4454093873500824},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.4136950373649597}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8168947696685791},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7866495847702026},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7203018069267273},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.614661693572998},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.5475004315376282},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5454105734825134},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5365806221961975},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5359194278717041},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5081145763397217},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.47570309042930603},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4528248906135559},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.4454093873500824},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.4136950373649597},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baw160","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw160","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw160/19228825/baw160.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:28062517","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28062517","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:USBKOELN.ub.uni-koeln.de:24271","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400371","display_name":"K\u00f6lner Universit\u00e4ts PublikationsServer (Universit\u00e4t zu K\u00f6ln)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210115942","host_organization_name":"Rhenish Institute for Environmental Research","host_organization_lineage":["https://openalex.org/I4210115942"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"doc-type:article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5216271","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5216271","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baw160","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw160","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw160/19228825/baw160.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.6499999761581421,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2568859793.pdf","grobid_xml":"https://content.openalex.org/works/W2568859793.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1483236517","https://openalex.org/W1577231857","https://openalex.org/W1991415686","https://openalex.org/W2095463689","https://openalex.org/W2103017472","https://openalex.org/W2107580398","https://openalex.org/W2108234281","https://openalex.org/W2149992227","https://openalex.org/W2245213139","https://openalex.org/W2912430686","https://openalex.org/W4213060373","https://openalex.org/W6634438429","https://openalex.org/W6830809091","https://openalex.org/W6906355099"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W188202134","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W4255934811","https://openalex.org/W2465382974","https://openalex.org/W2296339156"],"abstract_inverted_index":{"With":[0],"its":[1],"Firebrowse":[2],"service":[3,116],"(http://firebrowse.org/)":[4],"the":[5,94,106,114,137,153,156],"Broad":[6,138],"Institute":[7],"is":[8,40,143,150],"making":[9],"large-scale":[10],"multi-platform":[11],"omics":[12],"data":[13,56],"analysis":[14,53,167],"results":[15],"publicly":[16,89],"available":[17,90],"through":[18,31],"a":[19,60,65,84,122,129,146],"Representational":[20],"State":[21],"Transfer":[22],"(REST)":[23],"Application":[24],"Programmable":[25],"Interface":[26],"(API).":[27],"Querying":[28],"this":[29],"database":[30],"an":[32,36,41,126,133,165],"API":[33,79,97],"client":[34,107,135],"from":[35,105],"arbitrary":[37],"programming":[38],"environment":[39],"essential":[42],"task,":[43],"allowing":[44],"other":[45],"developers":[46],"and":[47,54,71,88,117],"researchers":[48],"to":[49,67,78,111,136],"focus":[50],"on":[51,121],"their":[52],"avoid":[55],"wrangling.":[57],"Hence,":[58],"as":[59,145],"first":[61],"result,":[62,131],"we":[63],"developed":[64],"workflow":[66],"automatically":[68],"generate,":[69],"test":[70],"deploy":[72],"such":[73],"clients":[74],"for":[75],"rapid":[76],"response":[77],"changes.":[80],"Its":[81],"underlying":[82],"infrastructure,":[83],"combination":[85],"of":[86,96,125,155,168],"free":[87],"web":[91],"services,":[92],"facilitates":[93],"development":[95],"clients.":[98],"It":[99],"decouples":[100],"changes":[101,112],"in":[102,113],"server":[103],"software":[104,108],"by":[109,152,164],"reacting":[110],"RESTful":[115,140],"removing":[118],"direct":[119],"dependencies":[120],"specific":[123],"implementation":[124],"API.":[127],"As":[128],"second":[130],"FirebrowseR,":[132],"R":[134],"Institute's":[139],"Firehose":[141],"Pipeline,":[142],"provided":[144],"working":[147],"example,":[148],"which":[149],"built":[151],"means":[154],"presented":[157],"workflow.":[158],"The":[159],"package's":[160],"features":[161],"are":[162],"demonstrated":[163],"example":[166],"cancer":[169],"gene":[170],"expression":[171],"data.Database":[172],"URL:":[173],"https://github.com/mariodeng/.":[174]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":27},{"year":2023,"cited_by_count":27},{"year":2022,"cited_by_count":26},{"year":2021,"cited_by_count":62},{"year":2020,"cited_by_count":32},{"year":2019,"cited_by_count":19},{"year":2018,"cited_by_count":13},{"year":2017,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
