{"id":"https://openalex.org/W2605218377","doi":"https://doi.org/10.1093/database/baw156","title":"BELMiner: adapting a rule-based relation extraction system to extract biological expression language statements from bio-medical literature evidence sentences","display_name":"BELMiner: adapting a rule-based relation extraction system to extract biological expression language statements from bio-medical literature evidence sentences","publication_year":2016,"publication_date":"2016-11-07","ids":{"openalex":"https://openalex.org/W2605218377","doi":"https://doi.org/10.1093/database/baw156","mag":"2605218377","pmid":"https://pubmed.ncbi.nlm.nih.gov/28365720"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw156","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw156","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw156/19228493/baw156.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw156/19228493/baw156.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111754779","display_name":"K. E. Ravikumar","orcid":null},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"K.E. Ravikumar","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic, USA and"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, USA and","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023661219","display_name":"Majid Rastegar-Mojarad","orcid":"https://orcid.org/0000-0001-6962-3554"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]},{"id":"https://openalex.org/I43579087","display_name":"University of Wisconsin\u2013Milwaukee","ror":"https://ror.org/031q21x57","country_code":"US","type":"education","lineage":["https://openalex.org/I43579087"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Majid Rastegar-Mojarad","raw_affiliation_strings":["Department of Health Informatics and Administration, University of Wisconsin-Milwaukee, Milwaukee, WI, USA","Department of Health Sciences Research, Mayo Clinic, USA and"],"affiliations":[{"raw_affiliation_string":"Department of Health Informatics and Administration, University of Wisconsin-Milwaukee, Milwaukee, WI, USA","institution_ids":["https://openalex.org/I43579087"]},{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, USA and","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101585391","display_name":"Hongfang Liu","orcid":"https://orcid.org/0000-0003-2570-3741"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongfang Liu","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic, USA and"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, USA and","institution_ids":["https://openalex.org/I4210146710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5111754779"],"corresponding_institution_ids":["https://openalex.org/I4210146710"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":3.1329,"has_fulltext":true,"cited_by_count":49,"citation_normalized_percentile":{"value":0.92016517,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"2017","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9746999740600586,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.968999981880188,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8008649349212646},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.677230954170227},{"id":"https://openalex.org/keywords/statement","display_name":"Statement (logic)","score":0.6526511907577515},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5734299421310425},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.5671066045761108},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5603898763656616},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5384803414344788},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5286902785301208},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.5194453597068787},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.47712066769599915},{"id":"https://openalex.org/keywords/test-set","display_name":"Test set","score":0.4723162353038788},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.45993852615356445},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.4344983398914337},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.4082447290420532},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.30749326944351196},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1767290234565735},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.13243147730827332}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8008649349212646},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.677230954170227},{"id":"https://openalex.org/C2777026412","wikidata":"https://www.wikidata.org/wiki/Q2684591","display_name":"Statement (logic)","level":2,"score":0.6526511907577515},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5734299421310425},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.5671066045761108},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5603898763656616},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5384803414344788},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5286902785301208},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.5194453597068787},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.47712066769599915},{"id":"https://openalex.org/C169903167","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Test set","level":2,"score":0.4723162353038788},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.45993852615356445},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.4344983398914337},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.4082447290420532},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.30749326944351196},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1767290234565735},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.13243147730827332},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baw156","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw156","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw156/19228493/baw156.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:28365720","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28365720","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:4323651","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5467463","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baw156","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw156","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw156/19228493/baw156.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7699999809265137,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2605218377.pdf","grobid_xml":"https://content.openalex.org/works/W2605218377.grobid-xml"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W1964670939","https://openalex.org/W1969709265","https://openalex.org/W2004620268","https://openalex.org/W2007069550","https://openalex.org/W2018874418","https://openalex.org/W2044514479","https://openalex.org/W2061166439","https://openalex.org/W2062163602","https://openalex.org/W2064030835","https://openalex.org/W2069157810","https://openalex.org/W2074640468","https://openalex.org/W2096777607","https://openalex.org/W2103017472","https://openalex.org/W2107580398","https://openalex.org/W2108621502","https://openalex.org/W2112227057","https://openalex.org/W2129113459","https://openalex.org/W2132784310","https://openalex.org/W2135290856","https://openalex.org/W2144896636","https://openalex.org/W2150908245","https://openalex.org/W2154139219","https://openalex.org/W2154142897","https://openalex.org/W2158505321","https://openalex.org/W2159583324","https://openalex.org/W2212494754","https://openalex.org/W2282345281","https://openalex.org/W2466023026","https://openalex.org/W2514231286","https://openalex.org/W4213060373","https://openalex.org/W6641265648","https://openalex.org/W6642750163","https://openalex.org/W6652047874","https://openalex.org/W6654860678","https://openalex.org/W6661380753","https://openalex.org/W6665863690","https://openalex.org/W6666172245","https://openalex.org/W6666673462","https://openalex.org/W6669084830","https://openalex.org/W6674362970","https://openalex.org/W6675471023","https://openalex.org/W6676058677","https://openalex.org/W6676529426","https://openalex.org/W6676573207","https://openalex.org/W6679124146","https://openalex.org/W6679816628","https://openalex.org/W6681646629","https://openalex.org/W6682124457","https://openalex.org/W6682489755","https://openalex.org/W6682497444","https://openalex.org/W6682920141","https://openalex.org/W6683386176","https://openalex.org/W6687998163","https://openalex.org/W6719465012"],"related_works":["https://openalex.org/W2916255597","https://openalex.org/W3095980030","https://openalex.org/W4319940250","https://openalex.org/W2352298027","https://openalex.org/W842810586","https://openalex.org/W2092919065","https://openalex.org/W4286980122","https://openalex.org/W4236762297","https://openalex.org/W3198510869","https://openalex.org/W4379379356"],"abstract_inverted_index":{"http://54.146.11.205:8484/BELXtractor/finder/.":[0]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
