{"id":"https://openalex.org/W2573117738","doi":"https://doi.org/10.1093/database/baw147","title":"The BioC-BioGRID corpus: full text articles annotated for curation of protein\u2013protein and genetic interactions","display_name":"The BioC-BioGRID corpus: full text articles annotated for curation of protein\u2013protein and genetic interactions","publication_year":2016,"publication_date":"2016-10-21","ids":{"openalex":"https://openalex.org/W2573117738","doi":"https://doi.org/10.1093/database/baw147","mag":"2573117738","pmid":"https://pubmed.ncbi.nlm.nih.gov/28077563"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw147","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw147","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw147/19228427/baw147.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw147/19228427/baw147.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008126200","display_name":"Rezarta Islamaj","orcid":"https://orcid.org/0000-0001-5651-1860"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Rezarta Islamaj Do\u011fan","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD20894, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100460452","display_name":"Sun Kim","orcid":"https://orcid.org/0000-0003-3072-6649"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sun Kim","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD20894, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088383521","display_name":"Andrew Chatr\u2010aryamontri","orcid":"https://orcid.org/0000-0002-1589-9982"},"institutions":[{"id":"https://openalex.org/I4210096154","display_name":"Institute for Research in Immunology and Cancer","ror":"https://ror.org/00wj6x496","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210096154"]},{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Andrew Chatr-aryamontri","raw_affiliation_strings":["Institute for Research in Immunology and Cancer, Universit\u00e9 de Montr\u00e9al, Canada Montr\u00e9al, QC H3C 3J7"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Research in Immunology and Cancer, Universit\u00e9 de Montr\u00e9al, Canada Montr\u00e9al, QC H3C 3J7","institution_ids":["https://openalex.org/I4210096154","https://openalex.org/I70931966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068884411","display_name":"Christie Chang","orcid":null},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christie S. Chang","raw_affiliation_strings":["Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005930177","display_name":"Rose Oughtred","orcid":"https://orcid.org/0000-0002-6475-3373"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rose Oughtred","raw_affiliation_strings":["Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012089973","display_name":"Jennifer Rust","orcid":null},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer Rust","raw_affiliation_strings":["Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111895206","display_name":"W. John Wilbur","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W. John Wilbur","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD20894, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031842571","display_name":"Donald C. Comeau","orcid":"https://orcid.org/0000-0002-9373-530X"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Donald C. Comeau","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD20894, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037884529","display_name":"Kara Dolinski","orcid":"https://orcid.org/0000-0002-7010-0264"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kara Dolinski","raw_affiliation_strings":["Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057700057","display_name":"Mike Tyers","orcid":"https://orcid.org/0000-0002-9713-9994"},"institutions":[{"id":"https://openalex.org/I1291836623","display_name":"Mount Sinai Hospital","ror":"https://ror.org/05deks119","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1291836623","https://openalex.org/I4210130843"]},{"id":"https://openalex.org/I210557978","display_name":"Lunenfeld-Tanenbaum Research Institute","ror":"https://ror.org/01s5axj25","country_code":"CA","type":"facility","lineage":["https://openalex.org/I1291836623","https://openalex.org/I210557978","https://openalex.org/I4210130843"]},{"id":"https://openalex.org/I4210096154","display_name":"Institute for Research in Immunology and Cancer","ror":"https://ror.org/00wj6x496","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210096154"]},{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Mike Tyers","raw_affiliation_strings":["Institute for Research in Immunology and Cancer, Universit\u00e9 de Montr\u00e9al, Canada Montr\u00e9al, QC H3C 3J7","Mount Sinai Hospital, The Lunenfeld-Tanenbaum Research Institute, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Research in Immunology and Cancer, Universit\u00e9 de Montr\u00e9al, Canada Montr\u00e9al, QC H3C 3J7","institution_ids":["https://openalex.org/I4210096154","https://openalex.org/I70931966"]},{"raw_affiliation_string":"Mount Sinai Hospital, The Lunenfeld-Tanenbaum Research Institute, Canada","institution_ids":["https://openalex.org/I210557978","https://openalex.org/I1291836623"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5008126200"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":2.6112,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.90147107,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"2017","issue":null,"first_page":"baw147","last_page":"baw147"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9882000088691711,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.8279325366020203},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8153523802757263},{"id":"https://openalex.org/keywords/crowdsourcing","display_name":"Crowdsourcing","score":0.6064916253089905},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5838937759399414},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5484176874160767},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4684688448905945},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.4522670805454254},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.4500754177570343},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3915102183818817},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.38263583183288574},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.375178724527359},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3618365526199341},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3249059021472931},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.31512027978897095},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2678139805793762},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.20391938090324402},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15896451473236084},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09839457273483276}],"concepts":[{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.8279325366020203},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8153523802757263},{"id":"https://openalex.org/C62230096","wikidata":"https://www.wikidata.org/wiki/Q275969","display_name":"Crowdsourcing","level":2,"score":0.6064916253089905},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5838937759399414},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5484176874160767},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4684688448905945},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.4522670805454254},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.4500754177570343},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3915102183818817},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.38263583183288574},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.375178724527359},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3618365526199341},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3249059021472931},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31512027978897095},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2678139805793762},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.20391938090324402},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15896451473236084},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09839457273483276},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baw147","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw147","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw147/19228427/baw147.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:28077563","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28077563","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5225395","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5225395","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baw147","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw147","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw147/19228427/baw147.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7273380189","display_name":null,"funder_award_id":"BB/F010486/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W2020357318","https://openalex.org/W2094726706","https://openalex.org/W2100751507","https://openalex.org/W2101727078","https://openalex.org/W2103897355","https://openalex.org/W2104148262","https://openalex.org/W2112543617","https://openalex.org/W2115150863","https://openalex.org/W2118582067","https://openalex.org/W2126276057","https://openalex.org/W2130930065","https://openalex.org/W2152398020","https://openalex.org/W2335791510","https://openalex.org/W2376200357","https://openalex.org/W2466023026","https://openalex.org/W2509885322","https://openalex.org/W2511894380","https://openalex.org/W2514231286","https://openalex.org/W2516150684","https://openalex.org/W2517024156","https://openalex.org/W2604688294","https://openalex.org/W2910384423"],"related_works":["https://openalex.org/W2169425537","https://openalex.org/W2059565715","https://openalex.org/W2901823680","https://openalex.org/W1999129612","https://openalex.org/W2116418175","https://openalex.org/W2009940763","https://openalex.org/W2126804125","https://openalex.org/W2946410450","https://openalex.org/W4361192415","https://openalex.org/W2137318037"],"abstract_inverted_index":{"A":[0],"great":[1],"deal":[2],"of":[3,11,70,109,158,164,207,237,246,256,261,268,273,284],"information":[4],"on":[5],"the":[6,18,42,47,90,97,107,122,125,138,195,285],"molecular":[7,180],"genetics":[8],"and":[9,31,52,66,101,177,179,184,188,209,227,239,249,258,270,280],"biochemistry":[10],"model":[12,222],"organisms":[13],"has":[14],"been":[15],"reported":[16],"in":[17,27,60,118,136,216,290],"scientific":[19],"literature.":[20],"However,":[21],"this":[22,40,159,291],"data":[23,57],"is":[24,32,58],"typically":[25],"described":[26],"free":[28],"text":[29,166,213],"form":[30],"not":[33],"readily":[34],"amenable":[35],"to":[36,88,99,142,150],"computational":[37],"analyses.":[38],"To":[39,105],"end,":[41],"BioGRID":[43,73,152,202],"database":[44],"systematically":[45],"curates":[46],"biomedical":[48],"literature":[49],"for":[50,121,234],"genetic":[51,185],"protein":[53],"interaction":[54,181],"data.":[55],"This":[56,130,190],"provided":[59],"a":[61,113,132,161,217],"standardized":[62],"computationally":[63],"tractable":[64],"format":[65],"includes":[67],"structured":[68],"annotation":[69,208],"experimental":[71,263],"evidence.":[72],"curation":[74],"necessarily":[75],"involves":[76],"substantial":[77],"human":[78],"effort":[79],"by":[80,200],"expert":[81],"curators":[82,203],"who":[83],"must":[84],"read":[85],"each":[86],"publication":[87],"extract":[89],"relevant":[91],"information.":[92],"Computational":[93],"text-mining":[94,111],"methods":[95],"offer":[96],"potential":[98],"augment":[100],"accelerate":[102],"manual":[103],"curation.":[104],"facilitate":[106],"development":[108],"practical":[110],"strategies,":[112],"new":[114],"challenge":[115],"was":[116,131,168,198],"organized":[117],"BioCreative":[119],"V":[120],"BioC":[123],"task,":[124,160],"collaborative":[126],"Biocurator":[127],"Assistant":[128],"Task.":[129],"non-competitive,":[133],"cooperative":[134],"task":[135],"which":[137,192],"participants":[139],"worked":[140],"together":[141],"build":[143],"BioC-compatible":[144],"modules":[145],"into":[146],"an":[147,155],"integrated":[148],"pipeline":[149],"assist":[151],"curators.":[153],"As":[154],"integral":[156],"part":[157],"test":[162],"collection":[163],"full":[165,212],"articles":[167,214],"developed":[169],"that":[170],"contained":[171],"both":[172],"biological":[173],"entity":[174],"annotations":[175,182,233,260,272],"(gene/protein":[176],"organism/species)":[178],"(protein-protein":[183],"interactions":[186],"(PPIs":[187],"GIs)).":[189],"collection,":[191],"we":[193],"call":[194],"BioC-BioGRID":[196,230,286],"corpus,":[197],"annotated":[199],"four":[201],"over":[204],"three":[205],"rounds":[206],"contains":[210,232],"120":[211],"curated":[215],"dataset":[218],"representing":[219],"two":[220],"major":[221],"organisms,":[223],"namely":[224],"budding":[225],"yeast":[226],"human.":[228],"The":[229,277],"corpus":[231,287],"6409":[235],"mentions":[236,245,255,267],"genes":[238],"their":[240,250],"Entrez":[241],"Gene":[242],"IDs,":[243,253],"186":[244],"organism":[247],"names":[248],"NCBI":[251],"Taxonomy":[252],"1867":[254],"PPIs":[257],"701":[259],"PPI":[262],"evidence":[264,275],"statements,":[265],"856":[266],"GIs":[269],"399":[271],"GI":[274],"statements.":[276],"purpose,":[278],"characteristics":[279],"possible":[281],"future":[282],"uses":[283],"are":[288],"detailed":[289],"report.Database":[292],"URL:":[293],"http://bioc.sourceforge.net/BioC-BioGRID.html.":[294]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2}],"updated_date":"2026-05-19T21:40:30.786675","created_date":"2017-01-26T00:00:00"}
