{"id":"https://openalex.org/W2557491692","doi":"https://doi.org/10.1093/database/baw145","title":"Text mining resources for the life sciences","display_name":"Text mining resources for the life sciences","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2557491692","doi":"https://doi.org/10.1093/database/baw145","mag":"2557491692","pmid":"https://pubmed.ncbi.nlm.nih.gov/27888231"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw145","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw145","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/database/baw145","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024181945","display_name":"Piotr Przyby\u0142a","orcid":"https://orcid.org/0000-0001-9043-6817"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Piotr Przyby\u0142a","raw_affiliation_strings":["National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester, UK matthew.shardlow@manchester.ac.uk","Sch Comp Sci, Natl Ctr Text Min (Royaume-Uni)"],"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester, UK matthew.shardlow@manchester.ac.uk","institution_ids":[]},{"raw_affiliation_string":"Sch Comp Sci, Natl Ctr Text Min (Royaume-Uni)","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035746903","display_name":"Matthew Shardlow","orcid":"https://orcid.org/0000-0003-1129-2750"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Matthew Shardlow","raw_affiliation_strings":["National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester, UK matthew.shardlow@manchester.ac.uk","Sch Comp Sci, Natl Ctr Text Min (Royaume-Uni)"],"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester, UK matthew.shardlow@manchester.ac.uk","institution_ids":[]},{"raw_affiliation_string":"Sch Comp Sci, Natl Ctr Text Min (Royaume-Uni)","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031131189","display_name":"Sophie Aubin","orcid":"https://orcid.org/0000-0003-4805-8220"},"institutions":[{"id":"https://openalex.org/I4210116501","display_name":"D\u00e9partement G\u00e9n\u00e9tique Animale","ror":"https://ror.org/029xmsm82","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210116501"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sophie Aubin","raw_affiliation_strings":["Institut National de la Recherche Agronomique, Jouy-en-Josas, France","DV-IST - DIST D\u00e9l\u00e9gation Information Scientifique et Technique (Route de Saint-Cyr (RD 10) - 78 026 Versailles cedex - France)"],"affiliations":[{"raw_affiliation_string":"Institut National de la Recherche Agronomique, Jouy-en-Josas, France","institution_ids":["https://openalex.org/I4210116501"]},{"raw_affiliation_string":"DV-IST - DIST D\u00e9l\u00e9gation Information Scientifique et Technique (Route de Saint-Cyr (RD 10) - 78 026 Versailles cedex - France)","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083008473","display_name":"Robert Bossy","orcid":"https://orcid.org/0000-0001-6652-9319"},"institutions":[{"id":"https://openalex.org/I4210116501","display_name":"D\u00e9partement G\u00e9n\u00e9tique Animale","ror":"https://ror.org/029xmsm82","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210116501"]},{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Robert Bossy","raw_affiliation_strings":["Institut National de la Recherche Agronomique, Jouy-en-Josas, France","MaIAGE - Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement [Jouy-En-Josas] (B\u00e2t. 233, Domaine de Vilvert - 78352 Jouy-en-Josas Cedex - France)"],"affiliations":[{"raw_affiliation_string":"Institut National de la Recherche Agronomique, Jouy-en-Josas, France","institution_ids":["https://openalex.org/I4210116501"]},{"raw_affiliation_string":"MaIAGE - Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement [Jouy-En-Josas] (B\u00e2t. 233, Domaine de Vilvert - 78352 Jouy-en-Josas Cedex - France)","institution_ids":["https://openalex.org/I4210159481"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091796714","display_name":"Richard Eckart de Castilho","orcid":"https://orcid.org/0000-0003-0991-7045"},"institutions":[{"id":"https://openalex.org/I4210102840","display_name":"Ubiquitous Energy (United States)","ror":"https://ror.org/01b06j989","country_code":"US","type":"company","lineage":["https://openalex.org/I4210102840"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard Eckart de Castilho","raw_affiliation_strings":["Ubiquitous Knowledge Processing Lab, Technische Universit\u00e4t Darmstadt, Darmstadt, Germany and","Ubiquitous Knowledge Proc Lab. (Allemagne)"],"affiliations":[{"raw_affiliation_string":"Ubiquitous Knowledge Processing Lab, Technische Universit\u00e4t Darmstadt, Darmstadt, Germany and","institution_ids":[]},{"raw_affiliation_string":"Ubiquitous Knowledge Proc Lab. (Allemagne)","institution_ids":["https://openalex.org/I4210102840"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090401945","display_name":"Stelios Piperidis","orcid":null},"institutions":[{"id":"https://openalex.org/I4210107233","display_name":"Language Science (South Korea)","ror":"https://ror.org/01h9v1373","country_code":"KR","type":"company","lineage":["https://openalex.org/I4210107233"]},{"id":"https://openalex.org/I4210098364","display_name":"Institute for Language and Speech Processing","ror":"https://ror.org/00z24kr14","country_code":"GR","type":"nonprofit","lineage":["https://openalex.org/I4210098364"]}],"countries":["GR","KR"],"is_corresponding":false,"raw_author_name":"Stelios Piperidis","raw_affiliation_strings":["Institute for Language and Speech Processing, Athena Research Center, Athens, Greece","Inst Language & Speech Proc (Gr\u00e8ce)"],"affiliations":[{"raw_affiliation_string":"Institute for Language and Speech Processing, Athena Research Center, Athens, Greece","institution_ids":["https://openalex.org/I4210098364"]},{"raw_affiliation_string":"Inst Language & Speech Proc (Gr\u00e8ce)","institution_ids":["https://openalex.org/I4210107233"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110478635","display_name":"John McNaught","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"John McNaught","raw_affiliation_strings":["National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester, UK","Sch Comp Sci, Natl Ctr Text Min (Royaume-Uni)"],"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Sch Comp Sci, Natl Ctr Text Min (Royaume-Uni)","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077976343","display_name":"Sophia Ananiadou","orcid":"https://orcid.org/0000-0002-4097-9191"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sophia Ananiadou","raw_affiliation_strings":["National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester, UK","Sch Comp Sci, Natl Ctr Text Min. (Royaume-Uni)"],"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining, School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Sch Comp Sci, Natl Ctr Text Min. (Royaume-Uni)","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5024181945"],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1112,"currency":"EUR","value_usd":1199},"fwci":2.789,"has_fulltext":false,"cited_by_count":52,"citation_normalized_percentile":{"value":0.90777044,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"2016","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9882000088691711,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7787913084030151},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7384405136108398},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.735180139541626},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6182448863983154},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5494463443756104},{"id":"https://openalex.org/keywords/adaptability","display_name":"Adaptability","score":0.5113832354545593},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.50140380859375},{"id":"https://openalex.org/keywords/categorization","display_name":"Categorization","score":0.4246925115585327},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.420188307762146},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3643624186515808},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.3395700752735138},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2480762004852295},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1495041847229004},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10667502880096436}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7787913084030151},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7384405136108398},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.735180139541626},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6182448863983154},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5494463443756104},{"id":"https://openalex.org/C177606310","wikidata":"https://www.wikidata.org/wiki/Q5674297","display_name":"Adaptability","level":2,"score":0.5113832354545593},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.50140380859375},{"id":"https://openalex.org/C94124525","wikidata":"https://www.wikidata.org/wiki/Q912550","display_name":"Categorization","level":2,"score":0.4246925115585327},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.420188307762146},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3643624186515808},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.3395700752735138},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2480762004852295},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1495041847229004},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10667502880096436},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/database/baw145","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw145","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:27888231","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27888231","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire/8edb37c2-cec7-411d-902b-6bf8178e12fb","is_oa":true,"landing_page_url":"https://research.manchester.ac.uk/en/publications/8edb37c2-cec7-411d-902b-6bf8178e12fb","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Przybyla, P, Shardlow, M, Aubin, S, Bossy, R, Eckart de Castilho, R, Piperidis, S, McNaught, J & Ananiadou, S 2016, 'Text Mining Resources for the Life Sciences', Database, vol. 2016. https://doi.org/10.1093/database/baw145","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:HAL:hal-01602241v1","is_oa":true,"landing_page_url":"https://hal.science/hal-01602241","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database - The journal of Biological Databases and Curation, 2016, november (25), pp.1-30. &#x27E8;10.1093/database/baw145&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:open-archive.highwire.org:databa:2016/0/baw145","is_oa":false,"landing_page_url":"http://database.oxfordjournals.org/cgi/content/short/2016/0/baw145","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:5199186","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5199186","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"pmh:oai:zenodo.org:1468912","is_oa":true,"landing_page_url":"https://zenodo.org/record/1468912","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database 2016 1-30","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/database/baw145","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw145","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production","score":0.5199999809265137}],"awards":[{"id":"https://openalex.org/G387813240","display_name":null,"funder_award_id":"BB/M0","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4492632425","display_name":"Enriching Metabolic PATHwaY models with evidence from the literature (EMPATHY)","funder_award_id":"BB/M006891/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G473771980","display_name":null,"funder_award_id":"BB/M006891/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G81988884","display_name":null,"funder_award_id":"654021","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"}],"funders":[{"id":"https://openalex.org/F4320309381","display_name":"Emory University","ror":"https://ror.org/03czfpz43"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":97,"referenced_works":["https://openalex.org/W9784843","https://openalex.org/W10957549","https://openalex.org/W63642558","https://openalex.org/W90362830","https://openalex.org/W157626857","https://openalex.org/W173717986","https://openalex.org/W197446148","https://openalex.org/W204104280","https://openalex.org/W777091318","https://openalex.org/W943972918","https://openalex.org/W947748625","https://openalex.org/W957639803","https://openalex.org/W1461570683","https://openalex.org/W1517674338","https://openalex.org/W1835740130","https://openalex.org/W1851092803","https://openalex.org/W1918405426","https://openalex.org/W1958077162","https://openalex.org/W1964670939","https://openalex.org/W1970989375","https://openalex.org/W1979900513","https://openalex.org/W1980041083","https://openalex.org/W1985592898","https://openalex.org/W1987818099","https://openalex.org/W1993906735","https://openalex.org/W1999073661","https://openalex.org/W2013434113","https://openalex.org/W2037038404","https://openalex.org/W2038721957","https://openalex.org/W2040298461","https://openalex.org/W2041971736","https://openalex.org/W2044294568","https://openalex.org/W2053998130","https://openalex.org/W2057954853","https://openalex.org/W2058490165","https://openalex.org/W2065692962","https://openalex.org/W2067814951","https://openalex.org/W2080133951","https://openalex.org/W2094726706","https://openalex.org/W2096797897","https://openalex.org/W2096951189","https://openalex.org/W2097716833","https://openalex.org/W2099701465","https://openalex.org/W2103017472","https://openalex.org/W2103397879","https://openalex.org/W2104148262","https://openalex.org/W2105939244","https://openalex.org/W2108454922","https://openalex.org/W2108798001","https://openalex.org/W2112227057","https://openalex.org/W2113142309","https://openalex.org/W2123808048","https://openalex.org/W2125552472","https://openalex.org/W2127780540","https://openalex.org/W2131660156","https://openalex.org/W2132079307","https://openalex.org/W2136410628","https://openalex.org/W2136482257","https://openalex.org/W2141541659","https://openalex.org/W2146089916","https://openalex.org/W2152398020","https://openalex.org/W2152670023","https://openalex.org/W2153225416","https://openalex.org/W2160943260","https://openalex.org/W2161062388","https://openalex.org/W2162311237","https://openalex.org/W2162832420","https://openalex.org/W2164092415","https://openalex.org/W2165428180","https://openalex.org/W2168644196","https://openalex.org/W2230587849","https://openalex.org/W2236252949","https://openalex.org/W2278140378","https://openalex.org/W2329535116","https://openalex.org/W2395032134","https://openalex.org/W2402320467","https://openalex.org/W2460098779","https://openalex.org/W2493670965","https://openalex.org/W2495004097","https://openalex.org/W2604748391","https://openalex.org/W2604799257","https://openalex.org/W2773056217","https://openalex.org/W2914431807","https://openalex.org/W2977393556","https://openalex.org/W3123584656","https://openalex.org/W4211054902","https://openalex.org/W4235505822","https://openalex.org/W6600371984","https://openalex.org/W6603694148","https://openalex.org/W6606354419","https://openalex.org/W6607880505","https://openalex.org/W6608362327","https://openalex.org/W6624643510","https://openalex.org/W6628605772","https://openalex.org/W6630977536","https://openalex.org/W6678610510","https://openalex.org/W6711991177"],"related_works":["https://openalex.org/W2357124094","https://openalex.org/W2387399993","https://openalex.org/W2389739210","https://openalex.org/W2348924972","https://openalex.org/W2365736347","https://openalex.org/W2047454415","https://openalex.org/W2070040999","https://openalex.org/W2387293848","https://openalex.org/W2250140200","https://openalex.org/W3121791438"],"abstract_inverted_index":{"Text":[0],"mining":[1,40,52,72],"is":[2],"a":[3,155,190],"powerful":[4],"technology":[5],"for":[6,96],"quickly":[7],"distilling":[8],"key":[9],"information":[10,111,126],"from":[11],"vast":[12],"quantities":[13],"of":[14,37,49,110,135,158,183],"biomedical":[15,94],"literature.":[16],"However,":[17],"to":[18,60,68,92,105,123,143,154,165,171,175,179,193,203],"harness":[19],"this":[20,43,186],"power":[21],"the":[22,29,50,57,79,102,107,173,200],"researcher":[23],"must":[24],"be":[25,141],"well":[26],"versed":[27],"in":[28,56,66,73,168],"availability,":[30],"suitability,":[31],"adaptability,":[32],"interoperability":[33],"and":[34,90,130,146,149,209],"comparative":[35],"accuracy":[36],"current":[38],"text":[39,51,71,97,117],"resources.":[41],"In":[42],"survey,":[44],"we":[45,188],"give":[46,189],"an":[47,133],"overview":[48,134],"resources":[53,81,177,194],"that":[54,115,139,195,198],"exist":[55],"life":[58],"sciences":[59],"help":[61],"researchers,":[62],"especially":[63],"those":[64,120],"employed":[65],"biocuration,":[67],"engage":[69],"with":[70,113],"their":[74,180],"own":[75,181],"work.":[76],"We":[77,161],"categorize":[78],"various":[80],"under":[82],"three":[83],"sections:":[84],"Content":[85],"Discovery":[86],"looks":[87],"at":[88],"where":[89],"how":[91],"find":[93,176],"publications":[95],"mining;":[98],"Knowledge":[99],"Encoding":[100],"describes":[101],"formats":[103,121],"used":[104,122,142],"represent":[106],"different":[108],"levels":[109],"associated":[112],"content":[114],"enable":[116,172],"mining,":[118],"including":[119],"carry":[124],"such":[125],"between":[127],"processes;":[128],"Tools":[129],"Services":[131],"gives":[132],"workflow":[136],"management":[137],"systems":[138],"can":[140],"rapidly":[144],"configure":[145],"compare":[147],"domain-":[148],"task-specific":[150],"processes,":[151],"via":[152],"access":[153],"wide":[156],"range":[157],"pre-built":[159],"tools.":[160],"also":[162],"provide":[163],"links":[164],"relevant":[166,178],"repositories":[167],"each":[169],"section":[170],"reader":[174],"area":[182],"interest.":[184],"Throughout":[185],"work":[187],"special":[191],"focus":[192],"are":[196],"interoperable-those":[197],"have":[199],"crucial":[201],"ability":[202],"share":[204],"information,":[205],"enabling":[206],"smooth":[207],"integration":[208],"reusability.":[210]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":5}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2016-12-08T00:00:00"}
