{"id":"https://openalex.org/W2542020674","doi":"https://doi.org/10.1093/database/baw135","title":"NERChem: adapting NERBio to chemical patents via full-token features and named entity feature with chemical sub-class composition","display_name":"NERChem: adapting NERBio to chemical patents via full-token features and named entity feature with chemical sub-class composition","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2542020674","doi":"https://doi.org/10.1093/database/baw135","mag":"2542020674"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw135","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw135","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw135/8225179/baw135.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw135/8225179/baw135.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030771512","display_name":"Richard Tzong\u2010Han Tsai","orcid":"https://orcid.org/0000-0003-0513-107X"},"institutions":[{"id":"https://openalex.org/I22265921","display_name":"National Central University","ror":"https://ror.org/00944ve71","country_code":"TW","type":"education","lineage":["https://openalex.org/I22265921"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Richard Tzong-Han Tsai","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Central University, Taiwan, R.O","Department of Computer Science and Information Engineering, National Central University, Taiwan, R.O.C"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Central University, Taiwan, R.O","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Central University, Taiwan, R.O.C","institution_ids":["https://openalex.org/I22265921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084645089","display_name":"Yu\u2010Cheng Hsiao","orcid":"https://orcid.org/0000-0003-3312-7318"},"institutions":[{"id":"https://openalex.org/I22265921","display_name":"National Central University","ror":"https://ror.org/00944ve71","country_code":"TW","type":"education","lineage":["https://openalex.org/I22265921"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yu-Cheng Hsiao","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Central University, Taiwan, R.O","Department of Computer Science and Information Engineering, National Central University, Taiwan, R.O.C"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Central University, Taiwan, R.O","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Central University, Taiwan, R.O.C","institution_ids":["https://openalex.org/I22265921"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016587469","display_name":"Po\u2010Ting Lai","orcid":"https://orcid.org/0000-0003-2025-318X"},"institutions":[{"id":"https://openalex.org/I25846049","display_name":"National Tsing Hua University","ror":"https://ror.org/00zdnkx70","country_code":"TW","type":"education","lineage":["https://openalex.org/I25846049"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Po-Ting Lai","raw_affiliation_strings":["Department of Computer Science, National Tsing-Hua University, Taiwan, R.O","Department of Computer Science, National Tsing-Hua University, Taiwan, R.O.C"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, National Tsing-Hua University, Taiwan, R.O","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, National Tsing-Hua University, Taiwan, R.O.C","institution_ids":["https://openalex.org/I25846049"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5030771512"],"corresponding_institution_ids":["https://openalex.org/I22265921"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.5085,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.71768546,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"2016","issue":null,"first_page":"baw135","last_page":"baw135"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9794999957084656,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9775000214576721,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7164925932884216},{"id":"https://openalex.org/keywords/security-token","display_name":"Security token","score":0.5728602409362793},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.5440394878387451},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5333811044692993},{"id":"https://openalex.org/keywords/lexical-analysis","display_name":"Lexical analysis","score":0.5313846468925476},{"id":"https://openalex.org/keywords/chemical-database","display_name":"Chemical database","score":0.5204936861991882},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.5081222057342529},{"id":"https://openalex.org/keywords/conditional-random-field","display_name":"Conditional random field","score":0.4633769094944},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4556487202644348},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4078047573566437},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3899006247520447},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.38891875743865967},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.16156888008117676}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7164925932884216},{"id":"https://openalex.org/C48145219","wikidata":"https://www.wikidata.org/wiki/Q1335365","display_name":"Security token","level":2,"score":0.5728602409362793},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.5440394878387451},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5333811044692993},{"id":"https://openalex.org/C176982825","wikidata":"https://www.wikidata.org/wiki/Q835922","display_name":"Lexical analysis","level":2,"score":0.5313846468925476},{"id":"https://openalex.org/C203394866","wikidata":"https://www.wikidata.org/wiki/Q2881060","display_name":"Chemical database","level":2,"score":0.5204936861991882},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.5081222057342529},{"id":"https://openalex.org/C152565575","wikidata":"https://www.wikidata.org/wiki/Q1124538","display_name":"Conditional random field","level":2,"score":0.4633769094944},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4556487202644348},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4078047573566437},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3899006247520447},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.38891875743865967},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.16156888008117676},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baw135","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw135","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw135/8225179/baw135.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmh:oai:open-archive.highwire.org:databa:2016/0/baw135","is_oa":false,"landing_page_url":"http://database.oxfordjournals.org/cgi/content/short/2016/0/baw135","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:5091336","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5091336","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baw135","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw135","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw135/8225179/baw135.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321040","display_name":"National Science Council","ror":"https://ror.org/02kv4zf79"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2542020674.pdf","grobid_xml":"https://content.openalex.org/works/W2542020674.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W77347155","https://openalex.org/W1601495365","https://openalex.org/W1992442866","https://openalex.org/W2018518196","https://openalex.org/W2080848531","https://openalex.org/W2095596879","https://openalex.org/W2096953947","https://openalex.org/W2107005506","https://openalex.org/W2109341881","https://openalex.org/W2116159459","https://openalex.org/W2132079307","https://openalex.org/W2140611297","https://openalex.org/W2145870108","https://openalex.org/W2147880316","https://openalex.org/W2159580878","https://openalex.org/W2165671627","https://openalex.org/W2169491861","https://openalex.org/W2171374484","https://openalex.org/W2913647772","https://openalex.org/W6675914680"],"related_works":["https://openalex.org/W2356597680","https://openalex.org/W2114846443","https://openalex.org/W3102147106","https://openalex.org/W2093471820","https://openalex.org/W2347460059","https://openalex.org/W4298195702","https://openalex.org/W2963816430","https://openalex.org/W2758375626","https://openalex.org/W3093768914","https://openalex.org/W2945402993"],"abstract_inverted_index":{"Chemical":[0,114,128],"patents":[1],"contain":[2],"detailed":[3],"information":[4],"on":[5,39,100],"novel":[6],"chemical":[7,14,29,34,57,72],"compounds":[8],"that":[9,26],"is":[10,37,53],"valuable":[11],"to":[12,90],"the":[13,40,80,92,101,113,127,135],"and":[15,82,106,121],"pharmaceutical":[16],"industries.":[17],"In":[18],"this":[19],"paper,":[20],"we":[21],"introduce":[22],"a":[23,122],"system,":[24],"NERChem":[25,36],"can":[27],"recognize":[28],"named":[30],"entity":[31],"mentions":[32,73,78],"in":[33,79,112,117,126],"patents.":[35],"based":[38],"conditional":[41],"random":[42],"fields":[43],"model":[44],"(CRF).":[45],"Our":[46],"approach":[47,99],"incorporates":[48],"(1)":[49],"class":[50],"composition,":[51],"which":[52,67,87],"used":[54,69,89],"for":[55,70],"combining":[56],"classes":[58],"whose":[59],"naming":[60],"conventions":[61],"are":[62,68,88],"similar;":[63],"(2)":[64],"BioNE":[65],"features,":[66,86],"distinguishing":[71],"from":[74],"other":[75],"biomedical":[76],"NE":[77],"patents;":[81],"(3)":[83],"full-token":[84],"word":[85],"resolve":[91],"tokenization":[93],"granularity":[94],"problem.":[95],"We":[96],"evaluated":[97],"our":[98],"BioCreative":[102],"V":[103],"CHEMDNER-patent":[104],"corpus,":[105],"achieved":[107],"an":[108],"F-score":[109],"of":[110,124],"87.17%":[111],"Entity":[115],"Mention":[116],"Patents":[118],"(CEMP)":[119],"task":[120],"sensitivity":[123],"98.58%":[125],"Passage":[129],"Detection":[130],"(CPD)":[131],"task,":[132],"ranking":[133],"alongside":[134],"top":[136],"systems.":[137]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
