{"id":"https://openalex.org/W2507306138","doi":"https://doi.org/10.1093/database/baw122","title":"Automated detection of discourse segment and experimental types from the text of cancer pathway results sections","display_name":"Automated detection of discourse segment and experimental types from the text of cancer pathway results sections","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2507306138","doi":"https://doi.org/10.1093/database/baw122","mag":"2507306138","pmid":"https://pubmed.ncbi.nlm.nih.gov/27580922"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw122","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw122","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw122/17474502/baw122.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw122/17474502/baw122.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087346345","display_name":"Gully Burns","orcid":"https://orcid.org/0000-0003-1493-865X"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Gully A.P.C. Burns","raw_affiliation_strings":["Information Sciences Institute, Viterbi School of Engineering, University of Southern California, Marina del Rey, CA 90292, USA gully@usc.edu","Information Sciences Institute, Viterbi School of Engineering, University of Southern California, Marina del Rey, CA 90292, USA"],"affiliations":[{"raw_affiliation_string":"Information Sciences Institute, Viterbi School of Engineering, University of Southern California, Marina del Rey, CA 90292, USA gully@usc.edu","institution_ids":[]},{"raw_affiliation_string":"Information Sciences Institute, Viterbi School of Engineering, University of Southern California, Marina del Rey, CA 90292, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029074038","display_name":"Pradeep Dasigi","orcid":"https://orcid.org/0000-0001-7127-1316"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pradeep Dasigi","raw_affiliation_strings":["Carnegie Mellon University, Language Technologies Institute, 5000 Forbes Avenue, Pittsburgh, PA 15213, USA"],"affiliations":[{"raw_affiliation_string":"Carnegie Mellon University, Language Technologies Institute, 5000 Forbes Avenue, Pittsburgh, PA 15213, USA","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024203789","display_name":"Anita de Waard","orcid":"https://orcid.org/0000-0002-9034-4119"},"institutions":[{"id":"https://openalex.org/I4210160498","display_name":"RELX Group (United States)","ror":"https://ror.org/05k2n4n22","country_code":"US","type":"company","lineage":["https://openalex.org/I4210160498","https://openalex.org/I4210160603"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anita de Waard","raw_affiliation_strings":["Elsevier Research Data Services, Jericho, VT 05465, USA"],"affiliations":[{"raw_affiliation_string":"Elsevier Research Data Services, Jericho, VT 05465, USA","institution_ids":["https://openalex.org/I4210160498"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060225743","display_name":"Eduard Hovy","orcid":"https://orcid.org/0000-0002-3270-7903"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eduard H. Hovy","raw_affiliation_strings":["Carnegie Mellon University, Language Technologies Institute, 5000 Forbes Avenue, Pittsburgh, PA 15213, USA"],"affiliations":[{"raw_affiliation_string":"Carnegie Mellon University, Language Technologies Institute, 5000 Forbes Avenue, Pittsburgh, PA 15213, USA","institution_ids":["https://openalex.org/I74973139"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5087346345"],"corresponding_institution_ids":["https://openalex.org/I1174212"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":2.7118,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.90319191,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"2016","issue":null,"first_page":"baw122","last_page":"baw122"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9672999978065491,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.6871305704116821},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6595730781555176},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.6537231802940369},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6464305520057678},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6178038120269775},{"id":"https://openalex.org/keywords/meaning","display_name":"Meaning (existential)","score":0.5587779879570007},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.55866539478302},{"id":"https://openalex.org/keywords/automatic-summarization","display_name":"Automatic summarization","score":0.5146954655647278},{"id":"https://openalex.org/keywords/coreference","display_name":"Coreference","score":0.4922238886356354},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.48249173164367676},{"id":"https://openalex.org/keywords/reading","display_name":"Reading (process)","score":0.4583228826522827},{"id":"https://openalex.org/keywords/argument","display_name":"Argument (complex analysis)","score":0.44450849294662476},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.43705490231513977},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.4201931655406952},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.40329647064208984},{"id":"https://openalex.org/keywords/resolution","display_name":"Resolution (logic)","score":0.2929537296295166},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.2813117504119873},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.13062167167663574},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12894946336746216}],"concepts":[{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.6871305704116821},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6595730781555176},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.6537231802940369},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6464305520057678},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6178038120269775},{"id":"https://openalex.org/C2780876879","wikidata":"https://www.wikidata.org/wiki/Q3054749","display_name":"Meaning (existential)","level":2,"score":0.5587779879570007},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.55866539478302},{"id":"https://openalex.org/C170858558","wikidata":"https://www.wikidata.org/wiki/Q1394144","display_name":"Automatic summarization","level":2,"score":0.5146954655647278},{"id":"https://openalex.org/C28076734","wikidata":"https://www.wikidata.org/wiki/Q63087","display_name":"Coreference","level":3,"score":0.4922238886356354},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.48249173164367676},{"id":"https://openalex.org/C554936623","wikidata":"https://www.wikidata.org/wiki/Q199657","display_name":"Reading (process)","level":2,"score":0.4583228826522827},{"id":"https://openalex.org/C98184364","wikidata":"https://www.wikidata.org/wiki/Q1780131","display_name":"Argument (complex analysis)","level":2,"score":0.44450849294662476},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.43705490231513977},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.4201931655406952},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.40329647064208984},{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.2929537296295166},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.2813117504119873},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.13062167167663574},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12894946336746216},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baw122","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw122","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw122/17474502/baw122.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:27580922","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27580922","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:databa:2016/0/baw122","is_oa":false,"landing_page_url":"http://database.oxfordjournals.org/cgi/content/short/2016/0/baw122","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:5006090","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5006090","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baw122","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw122","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw122/17474502/baw122.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.8899999856948853,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332180","display_name":"Defense Advanced Research Projects Agency","ror":"https://ror.org/02caytj08"},{"id":"https://openalex.org/F4320338281","display_name":"Army Research Office","ror":"https://ror.org/05epdh915"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2507306138.pdf","grobid_xml":"https://content.openalex.org/works/W2507306138.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W106453971","https://openalex.org/W147215453","https://openalex.org/W205532704","https://openalex.org/W1486798440","https://openalex.org/W1500530942","https://openalex.org/W1773329089","https://openalex.org/W1892851289","https://openalex.org/W1894075015","https://openalex.org/W1968466431","https://openalex.org/W1969709265","https://openalex.org/W1982428412","https://openalex.org/W1993679825","https://openalex.org/W1994610196","https://openalex.org/W1996430422","https://openalex.org/W2003553370","https://openalex.org/W2016976521","https://openalex.org/W2022279628","https://openalex.org/W2022806657","https://openalex.org/W2033982232","https://openalex.org/W2036824853","https://openalex.org/W2037442572","https://openalex.org/W2041197407","https://openalex.org/W2043764521","https://openalex.org/W2045738181","https://openalex.org/W2050554833","https://openalex.org/W2052042865","https://openalex.org/W2060871034","https://openalex.org/W2064030835","https://openalex.org/W2069024774","https://openalex.org/W2069263150","https://openalex.org/W2076373433","https://openalex.org/W2083566963","https://openalex.org/W2085809930","https://openalex.org/W2093034516","https://openalex.org/W2096537696","https://openalex.org/W2097240335","https://openalex.org/W2103017472","https://openalex.org/W2112543617","https://openalex.org/W2116944463","https://openalex.org/W2121588207","https://openalex.org/W2124649441","https://openalex.org/W2129522786","https://openalex.org/W2142096740","https://openalex.org/W2144499799","https://openalex.org/W2147880316","https://openalex.org/W2149378423","https://openalex.org/W2150908245","https://openalex.org/W2153887039","https://openalex.org/W2158439765","https://openalex.org/W2167746972","https://openalex.org/W2168773024","https://openalex.org/W2212431913","https://openalex.org/W2228862148","https://openalex.org/W2251293245","https://openalex.org/W2252924955","https://openalex.org/W2292778971","https://openalex.org/W2478599546"],"related_works":["https://openalex.org/W2152228269","https://openalex.org/W2003578783","https://openalex.org/W1521215947","https://openalex.org/W1710827551","https://openalex.org/W3004288456","https://openalex.org/W4362496998","https://openalex.org/W2803693270","https://openalex.org/W1663435917","https://openalex.org/W1496929818","https://openalex.org/W2094989391"],"abstract_inverted_index":{"Automated":[0],"machine-reading":[1],"biocuration":[2],"systems":[3,55],"typically":[4,50],"use":[5,14,227],"sentence-by-sentence":[6],"information":[7,266],"extraction":[8,267],"to":[9,29,46,48,58,74,90,164,216,238,240,269],"construct":[10,30],"meaning":[11,180],"representations":[12,49],"for":[13,168,247,250,254,277,284],"by":[15,27],"curators.":[16],"This":[17],"does":[18],"not":[19],"directly":[20],"reflect":[21],"the":[22,34,59,79,157,178,204,217,262,282],"typical":[23],"discourse":[24,134,163],"structure":[25],"used":[26,51,221,290],"scientists":[28,63],"an":[31,150],"argument":[32],"from":[33,84,190],"experimental":[35,91,173,270,288],"data":[36],"available":[37],"within":[38],"a":[39,118],"article,":[40],"and":[41,77,175,208,252],"is":[42],"therefore":[43],"less":[44],"likely":[45],"correspond":[47],"in":[52,136,181,195,214],"biomedical":[53],"informatics":[54],"(let":[56],"alone":[57],"mental":[60],"models":[61],"that":[62,88,192,264],"have).":[64],"In":[65,93],"this":[66],"study,":[67],"we":[68],"develop":[69],"Natural":[70],"Language":[71],"Processing":[72],"methods":[73,268,276,289],"locate,":[75],"extract,":[76],"classify":[78],"individual":[80,106,115,212],"passages":[81,189,234],"of":[82,96,101,120,152,161,219,245,287],"text":[83,188,233],"articles'":[85],"Results":[86],"sections":[87],"refer":[89],"data.":[92],"our":[94,185],"domain":[95],"interest":[97],"(molecular":[98],"biology":[99,197,294],"studies":[100],"cancer":[102],"signal":[103],"transduction":[104],"pathways),":[105],"articles":[107,191,215],"may":[108],"contain":[109],"as":[110,112],"many":[111],"30":[113],"small-scale":[114],"experiments":[116,213,239],"describing":[117],"variety":[119],"findings,":[121],"upon":[122],"which":[123],"authors":[124],"base":[125],"their":[126],"overall":[127],"research":[128],"conclusions.":[129],"Our":[130],"system":[131,186],"automatically":[132],"classifies":[133],"segments":[135,155],"these":[137,259],"texts":[138],"into":[139],"seven":[140],"categories":[141],"(fact,":[142],"hypothesis,":[143],"problem,":[144],"goal,":[145],"method,":[146],"result,":[147],"implication)":[148],"with":[149],"F-score":[151],"0.68.":[153],"These":[154],"describe":[156],"essential":[158],"building":[159],"blocks":[160],"scientific":[162],"(i)":[165],"provide":[166,273],"context":[167],"each":[169],"experiment,":[170],"(ii)":[171],"report":[172],"details":[174],"(iii)":[176],"explain":[177],"data's":[179],"context.":[182],"We":[183,226,279],"evaluate":[184],"on":[187,232],"were":[193],"curated":[194],"molecular":[196,293],"databases":[198],"(the":[199],"Pathway":[200,255],"Logic":[201],"Datum":[202],"repository,":[203],"Molecular":[205],"Interaction":[206],"MINT":[207],"INTACT":[209,251],"databases)":[210],"linking":[211],"type":[218],"assay":[220],"(coprecipitation,":[222],"phosphorylation,":[223],"translocation":[224],"etc.).":[225],"supervised":[228],"machine":[229],"learning":[230],"techniques":[231],"containing":[235],"unambiguous":[236],"references":[237],"obtain":[241],"baseline":[242],"F1":[243],"scores":[244],"0.59":[246],"MINT,":[248],"0.71":[249],"0.63":[253],"Logic.":[256],"Although":[257],"preliminary,":[258],"results":[260,271],"support":[261],"notion":[263],"targeting":[265],"could":[272],"accurate,":[274],"automated":[275],"biocuration.":[278],"also":[280],"suggest":[281],"need":[283],"finer-grained":[285],"curation":[286],"when":[291],"constructing":[292],"databases.":[295]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":12}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
