{"id":"https://openalex.org/W2517024156","doi":"https://doi.org/10.1093/database/baw120","title":"The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge","display_name":"The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2517024156","doi":"https://doi.org/10.1093/database/baw120","mag":"2517024156","pmid":"https://pubmed.ncbi.nlm.nih.gov/27542845"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw120","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw120","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw120/8225074/baw120.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw120/8225074/baw120.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067519995","display_name":"Mart\u00edn P\u00e9rez\u2010P\u00e9rez","orcid":"https://orcid.org/0000-0003-1349-6562"},"institutions":[{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Martin P\u00e9rez-P\u00e9rez","raw_affiliation_strings":["ESEI - Department of Computer Science, University of Vigo, Ourense, Spain"],"affiliations":[{"raw_affiliation_string":"ESEI - Department of Computer Science, University of Vigo, Ourense, Spain","institution_ids":["https://openalex.org/I6289922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057813067","display_name":"Gael P\u00e9rez\u2010Rodr\u00edguez","orcid":"https://orcid.org/0000-0001-6740-3742"},"institutions":[{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Gael P\u00e9rez-Rodr\u00edguez","raw_affiliation_strings":["ESEI - Department of Computer Science, University of Vigo, Ourense, Spain"],"affiliations":[{"raw_affiliation_string":"ESEI - Department of Computer Science, University of Vigo, Ourense, Spain","institution_ids":["https://openalex.org/I6289922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027971106","display_name":"Obdulia Rabal","orcid":"https://orcid.org/0000-0002-3224-0987"},"institutions":[{"id":"https://openalex.org/I88155538","display_name":"Universidad de Navarra","ror":"https://ror.org/02rxc7m23","country_code":"ES","type":"education","lineage":["https://openalex.org/I88155538"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Obdulia Rabal","raw_affiliation_strings":["Small Molecule Discovery Platform, Molecular Therapeutics Program, Center for Applied Medical Research (CIMA), University of Navarra, Pamplona, Spain"],"affiliations":[{"raw_affiliation_string":"Small Molecule Discovery Platform, Molecular Therapeutics Program, Center for Applied Medical Research (CIMA), University of Navarra, Pamplona, Spain","institution_ids":["https://openalex.org/I88155538"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008971014","display_name":"Migu\u00e9l V\u00e1zquez","orcid":"https://orcid.org/0000-0002-5713-1058"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Miguel Vazquez","raw_affiliation_strings":["Structural Computational Biology Group, Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Structural Computational Biology Group, Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre, Madrid, Spain","institution_ids":["https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081476843","display_name":"Julen Oyarz\u00e1bal","orcid":"https://orcid.org/0000-0003-1941-7255"},"institutions":[{"id":"https://openalex.org/I88155538","display_name":"Universidad de Navarra","ror":"https://ror.org/02rxc7m23","country_code":"ES","type":"education","lineage":["https://openalex.org/I88155538"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Julen Oyarzabal","raw_affiliation_strings":["Small Molecule Discovery Platform, Molecular Therapeutics Program, Center for Applied Medical Research (CIMA), University of Navarra, Pamplona, Spain"],"affiliations":[{"raw_affiliation_string":"Small Molecule Discovery Platform, Molecular Therapeutics Program, Center for Applied Medical Research (CIMA), University of Navarra, Pamplona, Spain","institution_ids":["https://openalex.org/I88155538"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048392452","display_name":"Florentino Fdez\u2010Riverola","orcid":"https://orcid.org/0000-0002-3943-8013"},"institutions":[{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Florentino Fdez-Riverola","raw_affiliation_strings":["ESEI - Department of Computer Science, University of Vigo, Ourense, Spain"],"affiliations":[{"raw_affiliation_string":"ESEI - Department of Computer Science, University of Vigo, Ourense, Spain","institution_ids":["https://openalex.org/I6289922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015217651","display_name":"Alfonso Valencia","orcid":"https://orcid.org/0000-0002-8937-6789"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alfonso Valencia","raw_affiliation_strings":["Structural Computational Biology Group, Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Structural Computational Biology Group, Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre, Madrid, Spain","institution_ids":["https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007203127","display_name":"Martin Krallinger","orcid":"https://orcid.org/0000-0002-2646-8782"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Martin Krallinger","raw_affiliation_strings":["Structural Computational Biology Group, Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Structural Computational Biology Group, Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre, Madrid, Spain","institution_ids":["https://openalex.org/I4210089594"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033016354","display_name":"An\u00e1lia Louren\u00e7o","orcid":"https://orcid.org/0000-0001-8401-5362"},"institutions":[{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]},{"id":"https://openalex.org/I88155538","display_name":"Universidad de Navarra","ror":"https://ror.org/02rxc7m23","country_code":"ES","type":"education","lineage":["https://openalex.org/I88155538"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"An\u00e1lia Louren\u00e7o","raw_affiliation_strings":["ESEI - Department of Computer Science, University of Vigo, Ourense, Spain Small Molecule Discovery Platform, Molecular Therapeutics Program, Center for Applied Medical Research (CIMA), University of Navarra, Pamplona, Spain analia@uvigo.es","ESEI - Department of Computer Science, University of Vigo, Ourense, Spain","Small Molecule Discovery Platform, Molecular Therapeutics Program, Center for Applied Medical Research (CIMA), University of Navarra, Pamplona, Spain"],"affiliations":[{"raw_affiliation_string":"ESEI - Department of Computer Science, University of Vigo, Ourense, Spain Small Molecule Discovery Platform, Molecular Therapeutics Program, Center for Applied Medical Research (CIMA), University of Navarra, Pamplona, Spain analia@uvigo.es","institution_ids":[]},{"raw_affiliation_string":"ESEI - Department of Computer Science, University of Vigo, Ourense, Spain","institution_ids":["https://openalex.org/I6289922"]},{"raw_affiliation_string":"Small Molecule Discovery Platform, Molecular Therapeutics Program, Center for Applied Medical Research (CIMA), University of Navarra, Pamplona, Spain","institution_ids":["https://openalex.org/I88155538"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5067519995"],"corresponding_institution_ids":["https://openalex.org/I6289922"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.3945,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.82350501,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2016","issue":null,"first_page":"baw120","last_page":"baw120"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9717000126838684,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8344449996948242},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8170292377471924},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6591602563858032},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.648595929145813},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5687381625175476},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5199383497238159},{"id":"https://openalex.org/keywords/reusability","display_name":"Reusability","score":0.4962974190711975},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.40821409225463867},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.38461369276046753},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33403128385543823},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3050188720226288},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.29407063126564026}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8344449996948242},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8170292377471924},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6591602563858032},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.648595929145813},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5687381625175476},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5199383497238159},{"id":"https://openalex.org/C137981799","wikidata":"https://www.wikidata.org/wiki/Q1369184","display_name":"Reusability","level":3,"score":0.4962974190711975},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.40821409225463867},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.38461369276046753},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33403128385543823},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3050188720226288},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.29407063126564026},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/database/baw120","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw120","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw120/8225074/baw120.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:27542845","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27542845","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:4076864","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5001550","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:databa:2016/0/baw120","is_oa":false,"landing_page_url":"http://database.oxfordjournals.org/cgi/content/short/2016/0/baw120","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:repositorium.sdum.uminho.pt:1822/42681","is_oa":true,"landing_page_url":"http://hdl.handle.net/1822/42681","pdf_url":null,"source":{"id":"https://openalex.org/S4306400354","display_name":"Reposit\u00f3riUM (Universidade do Minho)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I99682543","host_organization_name":"University of Minho","host_organization_lineage":["https://openalex.org/I99682543"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal article"},{"id":"pmh:oai:repositorium.uminho.pt:1822/42681","is_oa":true,"landing_page_url":"https://hdl.handle.net/1822/42681","pdf_url":null,"source":null,"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:www.investigo.biblioteca.uvigo.es:11093/8310","is_oa":true,"landing_page_url":"http://hdl.handle.net/11093/8310","pdf_url":null,"source":{"id":"https://openalex.org/S4377196408","display_name":"Investigo Institutional repository of UVigo (Universidade de Vigo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I6289922","host_organization_name":"Universidade de Vigo","host_organization_lineage":["https://openalex.org/I6289922"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/database/baw120","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw120","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw120/8225074/baw120.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3981126665","display_name":null,"funder_award_id":"Seventh Framework Programme","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G495392292","display_name":null,"funder_award_id":"FEDER","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5578623706","display_name":null,"funder_award_id":"316265","funder_id":"https://openalex.org/F4320338351","funder_display_name":"FP7 Research Potential of Convergence Regions"},{"id":"https://openalex.org/G6287471153","display_name":null,"funder_award_id":"14VI05","funder_id":"https://openalex.org/F4320324091","funder_display_name":"Universidade de Vigo"},{"id":"https://openalex.org/G6988057714","display_name":null,"funder_award_id":"316265","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320322649","display_name":"Universidad de Navarra","ror":"https://ror.org/02rxc7m23"},{"id":"https://openalex.org/F4320324091","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595"},{"id":"https://openalex.org/F4320338351","display_name":"FP7 Research Potential of Convergence Regions","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2517024156.pdf","grobid_xml":"https://content.openalex.org/works/W2517024156.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W42742550","https://openalex.org/W1968761064","https://openalex.org/W1974805744","https://openalex.org/W1980774081","https://openalex.org/W1993760127","https://openalex.org/W2071972943","https://openalex.org/W2112543617","https://openalex.org/W2118582067","https://openalex.org/W2120824164","https://openalex.org/W2127603354","https://openalex.org/W2145870108","https://openalex.org/W2149369282","https://openalex.org/W2154142897","https://openalex.org/W2165644686","https://openalex.org/W2170505850"],"related_works":["https://openalex.org/W4282938614","https://openalex.org/W2906929912","https://openalex.org/W2099755394","https://openalex.org/W2350686889","https://openalex.org/W1965839502","https://openalex.org/W2114764029","https://openalex.org/W2621742671","https://openalex.org/W2361861616","https://openalex.org/W4285132742","https://openalex.org/W2373101891"],"abstract_inverted_index":{"Biomedical":[0],"text":[1,162,167],"mining":[2,163,168],"methods":[3],"and":[4,27,29,83,87,104,111,131,151,165,179,182],"technologies":[5],"have":[6,15,46],"improved":[7],"significantly":[8],"in":[9,18],"the":[10,20,43,51,64,68,80,102,112,115,119,128,138,145,166,173],"last":[11],"decade.":[12],"Considerable":[13],"efforts":[14],"been":[16,76],"invested":[17],"understanding":[19],"main":[21],"challenges":[22,164],"of":[23,34,53,85,107,114,141,154],"biomedical":[24,59,161],"literature":[25],"retrieval":[26],"extraction":[28],"proposing":[30],"solutions":[31],"to":[32,78,126,176],"problems":[33],"practical":[35,58],"interest.":[36],"Most":[37],"notably,":[38],"community-oriented":[39],"initiatives":[40],"such":[41],"as":[42],"BioCreative":[44],"challenge":[45],"enabled":[47],"controlled":[48],"environments":[49],"for":[50,101,118],"comparison":[52],"automatic":[54,108,184],"systems":[55,110],"while":[56],"pursuing":[57],"tasks.":[60],"Under":[61],"this":[62,95],"scenario,":[63],"present":[65],"work":[66],"describes":[67],"Markyt":[69,121,174],"Web-based":[70],"document":[71],"curation":[72],"platform,":[73],"which":[74],"has":[75],"implemented":[77],"support":[79,127],"visualisation,":[81],"prediction":[82,109],"benchmark":[84],"chemical":[86],"gene":[88],"mention":[89],"annotations":[90,150,181],"at":[91],"BioCreative/CHEMDNER":[92],"challenge.":[93,120],"Creating":[94],"platform":[96,175],"is":[97],"an":[98],"important":[99],"step":[100],"systematic":[103],"public":[105],"evaluation":[106],"reusability":[113],"knowledge":[116],"compiled":[117],"was":[122],"not":[123],"only":[124],"critical":[125],"manual":[129],"annotation":[130,132],"revision":[133],"process":[134],"but":[135],"also":[136],"facilitated":[137],"comparative":[139,152],"visualisation":[140],"automated":[142],"results":[143],"against":[144],"manually":[146],"generated":[147,155],"Gold":[148],"Standard":[149],"assessment":[153],"results.":[156],"We":[157],"expect":[158],"that":[159],"future":[160],"community":[169],"may":[170],"benefit":[171],"from":[172],"better":[177],"explore":[178],"interpret":[180],"improve":[183],"system":[185],"predictions.Database":[186],"URL:":[187],"http://www.markyt.org,":[188],"https://github.com/sing-group/Markyt.":[189]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
