{"id":"https://openalex.org/W2493604181","doi":"https://doi.org/10.1093/database/baw114","title":"PvTFDB: aPhaseolus vulgaristranscription factors database for expediting functional genomics in legumes","display_name":"PvTFDB: aPhaseolus vulgaristranscription factors database for expediting functional genomics in legumes","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2493604181","doi":"https://doi.org/10.1093/database/baw114","mag":"2493604181","pmid":"https://pubmed.ncbi.nlm.nih.gov/27465131"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw114","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw114","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/database/baw114","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040325206","display_name":"Bhawna","orcid":null},"institutions":[{"id":"https://openalex.org/I4210092736","display_name":"Professor Jayashankar Telangana Agricultural University","ror":"https://ror.org/00e0bf989","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210092736"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Bhawna","raw_affiliation_strings":["Institute of Biotechnology, PJTSAU, Rajendra Nagar, Hyderabad 500030, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biotechnology, PJTSAU, Rajendra Nagar, Hyderabad 500030, India","institution_ids":["https://openalex.org/I4210092736"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108044634","display_name":"V.S. Bonthala","orcid":null},"institutions":[{"id":"https://openalex.org/I4210092736","display_name":"Professor Jayashankar Telangana Agricultural University","ror":"https://ror.org/00e0bf989","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210092736"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"V.S. Bonthala","raw_affiliation_strings":["Institute of Biotechnology, PJTSAU, Rajendra Nagar, Hyderabad 500030, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biotechnology, PJTSAU, Rajendra Nagar, Hyderabad 500030, India","institution_ids":["https://openalex.org/I4210092736"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034894923","display_name":"MNV Prasad Gajula","orcid":"https://orcid.org/0000-0002-3882-1379"},"institutions":[{"id":"https://openalex.org/I4210092736","display_name":"Professor Jayashankar Telangana Agricultural University","ror":"https://ror.org/00e0bf989","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210092736"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"MNV Prasad Gajula","raw_affiliation_strings":["Institute of Biotechnology, PJTSAU, Rajendra Nagar, Hyderabad 500030, India gajula.ibt@gmail.com","Institute of Biotechnology, PJTSAU, Rajendra Nagar, Hyderabad 500030, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biotechnology, PJTSAU, Rajendra Nagar, Hyderabad 500030, India gajula.ibt@gmail.com","institution_ids":["https://openalex.org/I4210092736"]},{"raw_affiliation_string":"Institute of Biotechnology, PJTSAU, Rajendra Nagar, Hyderabad 500030, India","institution_ids":["https://openalex.org/I4210092736"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5034894923"],"corresponding_institution_ids":["https://openalex.org/I4210092736"],"apc_list":{"value":2729,"currency":"USD","value_usd":2729},"apc_paid":{"value":2729,"currency":"USD","value_usd":2729},"fwci":5.8895,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.95099584,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"2016","issue":null,"first_page":"baw114","last_page":"baw114"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12771","display_name":"Plant pathogens and resistance mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12771","display_name":"Plant pathogens and resistance mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11470","display_name":"Legume Nitrogen Fixing Symbiosis","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12571","display_name":"Soybean genetics and cultivation","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.624519407749176},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6077932119369507},{"id":"https://openalex.org/keywords/functional-genomics","display_name":"Functional genomics","score":0.5591334700584412},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5484904646873474},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5250054597854614},{"id":"https://openalex.org/keywords/phaseolus","display_name":"Phaseolus","score":0.5107564926147461},{"id":"https://openalex.org/keywords/expediting","display_name":"Expediting","score":0.4517020285129547},{"id":"https://openalex.org/keywords/abiotic-stress","display_name":"Abiotic stress","score":0.4345088601112366},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.43009570240974426},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4275890588760376},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.4186152219772339},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4079247713088989},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.334467351436615},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.18391746282577515}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.624519407749176},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6077932119369507},{"id":"https://openalex.org/C161078062","wikidata":"https://www.wikidata.org/wiki/Q1068690","display_name":"Functional genomics","level":5,"score":0.5591334700584412},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5484904646873474},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5250054597854614},{"id":"https://openalex.org/C2776286235","wikidata":"https://www.wikidata.org/wiki/Q310438","display_name":"Phaseolus","level":2,"score":0.5107564926147461},{"id":"https://openalex.org/C134448949","wikidata":"https://www.wikidata.org/wiki/Q1384274","display_name":"Expediting","level":2,"score":0.4517020285129547},{"id":"https://openalex.org/C89519541","wikidata":"https://www.wikidata.org/wiki/Q4667893","display_name":"Abiotic stress","level":3,"score":0.4345088601112366},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.43009570240974426},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4275890588760376},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.4186152219772339},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4079247713088989},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.334467351436615},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.18391746282577515},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D027805","descriptor_name":"Phaseolus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D027805","descriptor_name":"Phaseolus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D027805","descriptor_name":"Phaseolus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D027805","descriptor_name":"Phaseolus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D027805","descriptor_name":"Phaseolus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D027805","descriptor_name":"Phaseolus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baw114","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw114","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:27465131","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27465131","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:3924831","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4962766","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:databa:2016/0/baw114","is_oa":false,"landing_page_url":"http://database.oxfordjournals.org/cgi/content/short/2016/0/baw114","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/database/baw114","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw114","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.5199999809265137,"display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1973408021","https://openalex.org/W2018149277","https://openalex.org/W2021044098","https://openalex.org/W2021123883","https://openalex.org/W2022366078","https://openalex.org/W2025119870","https://openalex.org/W2055043387","https://openalex.org/W2065589216","https://openalex.org/W2097382368","https://openalex.org/W2097706568","https://openalex.org/W2132632499","https://openalex.org/W2151831732","https://openalex.org/W2164154943","https://openalex.org/W2173825152","https://openalex.org/W2183892384","https://openalex.org/W2197643762","https://openalex.org/W2212717686","https://openalex.org/W2277885093","https://openalex.org/W2291193892","https://openalex.org/W2302395337","https://openalex.org/W4232087855","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W2071999521","https://openalex.org/W2085395339","https://openalex.org/W2024632604","https://openalex.org/W2068005943","https://openalex.org/W4317792299","https://openalex.org/W2010478499","https://openalex.org/W2050011582","https://openalex.org/W2051220639","https://openalex.org/W2853203789","https://openalex.org/W2150533177"],"abstract_inverted_index":{"The":[0,149],"common":[1,161],"bean":[2,162],"[Phaseolus":[3],"vulgaris":[4],"(L.)]":[5],"is":[6,20],"one":[7],"of":[8,41,60,98,143,147,151,160,183,222],"the":[9,42,46,99,139,166,230,236,244],"essential":[10],"proteinaceous":[11],"vegetables":[12],"grown":[13],"in":[14,86,137,243],"developing":[15],"countries.":[16],"However,":[17],"its":[18],"production":[19,179],"challenged":[21],"by":[22,26,195,198],"low":[23],"yields":[24],"caused":[25],"numerous":[27],"biotic":[28],"and":[29,44,55,126,164,191,197,235],"abiotic":[30],"stress":[31,52,171],"conditions.":[32],"Regulatory":[33],"transcription":[34],"factors":[35],"(TFs)":[36],"symbolize":[37],"a":[38,70,93,144,181,206],"key":[39],"component":[40],"genome":[43],"are":[45,63,154,217],"most":[47],"significant":[48],"targets":[49],"for":[50,74,96,177,210],"producing":[51],"tolerant":[53],"crop":[54,220],"hence":[56],"functional":[57,106,140,157,189],"genomic":[58,141],"studies":[59,142],"these":[61],"TFs":[62,72,163],"important.":[64],"Therefore,":[65],"here":[66],"we":[67],"have":[68],"constructed":[69],"web-accessible":[71],"database":[73,91,153,201,228,245],"P.":[75],"vulgaris,":[76],"called":[77],"PvTFDB,":[78],"which":[79],"contains":[80],"2370":[81],"putative":[82],"TF":[83,88,101],"gene":[84,120,127,187],"models":[85],"49":[87],"families.":[89],"This":[90,200],"provides":[92],"comprehensive":[94],"information":[95,133],"each":[97],"identified":[100],"that":[102],"includes":[103],"sequence":[104],"data,":[105,122],"annotation,":[107],"SSRs":[108],"with":[109],"their":[110],"primer":[111],"sets,":[112],"protein":[113],"physical":[114],"properties,":[115],"chromosomal":[116],"location,":[117],"phylogeny,":[118],"tissue-specific":[119],"expression":[121],"orthologues,":[123],"cis-regulatory":[124],"elements":[125],"ontology":[128],"(GO)":[129],"assignment.":[130],"Altogether,":[131],"this":[132,152,227],"would":[134],"be":[135],"used":[136],"expediting":[138],"specific":[145],"TF(s)":[146],"interest.":[148],"objectives":[150],"to":[155,173],"understand":[156],"genomics":[158],"study":[159],"recognize":[165],"regulatory":[167],"mechanisms":[168],"underlying":[169],"various":[170],"responses":[172],"ease":[174],"breeding":[175],"strategy":[176],"variety":[178],"through":[180],"couple":[182],"search":[184],"interfaces":[185,193],"including":[186,194],"ID,":[188],"annotation":[190],"browsing":[192],"family":[196],"chromosome.":[199],"will":[202],"also":[203],"serve":[204],"as":[205,212,214],"promising":[207],"central":[208],"repository":[209],"researchers":[211],"well":[213],"breeders":[215],"who":[216],"working":[218],"towards":[219],"improvement":[221],"legume":[223],"crops.":[224],"In":[225],"addition,":[226],"provide":[229],"user":[231,237],"unrestricted":[232],"public":[233],"access":[234],"can":[238],"download":[239],"entire":[240],"data":[241],"present":[242],"freely.Database":[246],"URL:":[247],"http://www.multiomics.in/PvTFDB/.":[248]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2016-08-23T00:00:00"}
