{"id":"https://openalex.org/W2514231286","doi":"https://doi.org/10.1093/database/baw113","title":"Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL)","display_name":"Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL)","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2514231286","doi":"https://doi.org/10.1093/database/baw113","mag":"2514231286","pmid":"https://pubmed.ncbi.nlm.nih.gov/27554092"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw113","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw113","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw113/8225012/baw113.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw113/8225012/baw113.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077378114","display_name":"Juliane Fluck","orcid":"https://orcid.org/0000-0003-1379-7023"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Juliane Fluck","raw_affiliation_strings":["Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, Sankt Augustin, Germany juliane.fluck@scai.fraunhofer.de","Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, Sankt Augustin, Germany juliane.fluck@scai.fraunhofer.de","institution_ids":["https://openalex.org/I4210098248"]},{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090087547","display_name":"Sumit Madan","orcid":"https://orcid.org/0000-0001-9970-4144"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sumit Madan","raw_affiliation_strings":["Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032393679","display_name":"Sam Ansari","orcid":"https://orcid.org/0000-0003-0947-7019"},"institutions":[{"id":"https://openalex.org/I2800621710","display_name":"Philip Morris International (Switzerland)","ror":"https://ror.org/03z9zz970","country_code":"CH","type":"company","lineage":["https://openalex.org/I2800621710","https://openalex.org/I4210088192"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Sam Ansari","raw_affiliation_strings":["Philip Morris International R&D, Philip Morris Products S.A, Quai Jeanrenaud 5, Neuch\u00e2tel, 2000, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philip Morris International R&D, Philip Morris Products S.A, Quai Jeanrenaud 5, Neuch\u00e2tel, 2000, Switzerland","institution_ids":["https://openalex.org/I2800621710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000031695","display_name":"Alpha Tom Kodamullil","orcid":"https://orcid.org/0000-0001-9896-3531"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alpha T. Kodamullil","raw_affiliation_strings":["Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007731858","display_name":"Reagon Karki","orcid":"https://orcid.org/0000-0002-1815-0037"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Reagon Karki","raw_affiliation_strings":["Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023661219","display_name":"Majid Rastegar-Mojarad","orcid":"https://orcid.org/0000-0001-6962-3554"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Majid Rastegar-Mojarad","raw_affiliation_strings":["Department of Health Science Research, Mayo Clinic, Rochester, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Science Research, Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086348189","display_name":"Natalie L. Catlett","orcid":null},"institutions":[{"id":"https://openalex.org/I4210160988","display_name":"Selventa (United States)","ror":"https://ror.org/051d2r706","country_code":"US","type":"company","lineage":["https://openalex.org/I4210160988"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Natalie L. Catlett","raw_affiliation_strings":["Selventa, One Alewife Center, Cambridge, MA 02140, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Selventa, One Alewife Center, Cambridge, MA 02140, USA","institution_ids":["https://openalex.org/I4210160988"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112170177","display_name":"William Hayes","orcid":null},"institutions":[{"id":"https://openalex.org/I4210160988","display_name":"Selventa (United States)","ror":"https://ror.org/051d2r706","country_code":"US","type":"company","lineage":["https://openalex.org/I4210160988"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William Hayes","raw_affiliation_strings":["Selventa, One Alewife Center, Cambridge, MA 02140, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Selventa, One Alewife Center, Cambridge, MA 02140, USA","institution_ids":["https://openalex.org/I4210160988"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021007589","display_name":"Justyna Szostak","orcid":"https://orcid.org/0000-0002-6233-612X"},"institutions":[{"id":"https://openalex.org/I2800621710","display_name":"Philip Morris International (Switzerland)","ror":"https://ror.org/03z9zz970","country_code":"CH","type":"company","lineage":["https://openalex.org/I2800621710","https://openalex.org/I4210088192"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Justyna Szostak","raw_affiliation_strings":["Philip Morris International R&D, Philip Morris Products S.A, Quai Jeanrenaud 5, Neuch\u00e2tel, 2000, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philip Morris International R&D, Philip Morris Products S.A, Quai Jeanrenaud 5, Neuch\u00e2tel, 2000, Switzerland","institution_ids":["https://openalex.org/I2800621710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087038430","display_name":"Julia Hoeng","orcid":"https://orcid.org/0000-0001-5371-6801"},"institutions":[{"id":"https://openalex.org/I2800621710","display_name":"Philip Morris International (Switzerland)","ror":"https://ror.org/03z9zz970","country_code":"CH","type":"company","lineage":["https://openalex.org/I2800621710","https://openalex.org/I4210088192"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Julia Hoeng","raw_affiliation_strings":["Philip Morris International R&D, Philip Morris Products S.A, Quai Jeanrenaud 5, Neuch\u00e2tel, 2000, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philip Morris International R&D, Philip Morris Products S.A, Quai Jeanrenaud 5, Neuch\u00e2tel, 2000, Switzerland","institution_ids":["https://openalex.org/I2800621710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012278670","display_name":"Manuel C. Peitsch","orcid":"https://orcid.org/0000-0001-5324-359X"},"institutions":[{"id":"https://openalex.org/I2800621710","display_name":"Philip Morris International (Switzerland)","ror":"https://ror.org/03z9zz970","country_code":"CH","type":"company","lineage":["https://openalex.org/I2800621710","https://openalex.org/I4210088192"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Manuel Peitsch","raw_affiliation_strings":["Philip Morris International R&D, Philip Morris Products S.A, Quai Jeanrenaud 5, Neuch\u00e2tel, 2000, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philip Morris International R&D, Philip Morris Products S.A, Quai Jeanrenaud 5, Neuch\u00e2tel, 2000, Switzerland","institution_ids":["https://openalex.org/I2800621710"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5077378114"],"corresponding_institution_ids":["https://openalex.org/I4210098248"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":2.9593,"has_fulltext":false,"cited_by_count":28,"citation_normalized_percentile":{"value":0.91233746,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"2016","issue":null,"first_page":"baw113","last_page":"baw113"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.719261884689331},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.6644044518470764},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6145661473274231},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.538048505783081},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.4420641362667084},{"id":"https://openalex.org/keywords/extraction","display_name":"Extraction (chemistry)","score":0.4333184063434601},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.16458696126937866}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.719261884689331},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.6644044518470764},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6145661473274231},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.538048505783081},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.4420641362667084},{"id":"https://openalex.org/C4725764","wikidata":"https://www.wikidata.org/wiki/Q844704","display_name":"Extraction (chemistry)","level":2,"score":0.4333184063434601},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.16458696126937866},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/database/baw113","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw113","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw113/8225012/baw113.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:27554092","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27554092","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:3954546","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4995071","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:fraunhofer.de:N-423353","is_oa":false,"landing_page_url":"http://publica.fraunhofer.de/documents/N-423353.html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400801","display_name":"Publikationsdatenbank der Fraunhofer-Gesellschaft (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fraunhofer SCAI","raw_type":"Journal Article"},{"id":"pmh:oai:open-archive.highwire.org:databa:2016/0/baw113","is_oa":false,"landing_page_url":"http://database.oxfordjournals.org/cgi/content/short/2016/0/baw113","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:publica.fraunhofer.de:publica/245743","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/245743","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1093/database/baw113","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw113","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw113/8225012/baw113.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4000000059604645,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320315260","display_name":"Philip Morris International","ror":"https://ror.org/005rxfw29"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W24812841","https://openalex.org/W1123879001","https://openalex.org/W1490161904","https://openalex.org/W1561585380","https://openalex.org/W1578843544","https://openalex.org/W1637237455","https://openalex.org/W1679133234","https://openalex.org/W1958105284","https://openalex.org/W1964670939","https://openalex.org/W1969709265","https://openalex.org/W1976029010","https://openalex.org/W1989842786","https://openalex.org/W1997156282","https://openalex.org/W1997707189","https://openalex.org/W2009405916","https://openalex.org/W2012896813","https://openalex.org/W2052250375","https://openalex.org/W2053154970","https://openalex.org/W2053673723","https://openalex.org/W2058490165","https://openalex.org/W2069157810","https://openalex.org/W2105123684","https://openalex.org/W2112227057","https://openalex.org/W2118582067","https://openalex.org/W2119091936","https://openalex.org/W2120890012","https://openalex.org/W2121844933","https://openalex.org/W2123579157","https://openalex.org/W2134488721","https://openalex.org/W2141869602","https://openalex.org/W2145870108","https://openalex.org/W2147984368","https://openalex.org/W2149369282","https://openalex.org/W2150850055","https://openalex.org/W2162442688","https://openalex.org/W2164777277","https://openalex.org/W2165644686","https://openalex.org/W2167432612","https://openalex.org/W2169250641","https://openalex.org/W2170189740","https://openalex.org/W2195611941","https://openalex.org/W2257876130","https://openalex.org/W2295176399","https://openalex.org/W2374459179","https://openalex.org/W2393502053","https://openalex.org/W2397228500","https://openalex.org/W2466023026","https://openalex.org/W2915667579","https://openalex.org/W2916355958","https://openalex.org/W4237029803","https://openalex.org/W6692126448","https://openalex.org/W6712280274"],"related_works":["https://openalex.org/W2392243736","https://openalex.org/W86652014","https://openalex.org/W2328518092","https://openalex.org/W3101249758","https://openalex.org/W2382079200","https://openalex.org/W2374091470","https://openalex.org/W1902660783","https://openalex.org/W4388218547","https://openalex.org/W3204019825","https://openalex.org/W2368651715"],"abstract_inverted_index":{"Success":[0],"in":[1,29,238,289],"extracting":[2],"biological":[3,40,71,88,183],"relationships":[4,58,95],"is":[5,79],"mainly":[6,106],"dependent":[7],"on":[8,166],"the":[9,12,17,26,30,48,80,99,121,124,142,156,225,231,262,290,293],"complexity":[10],"of":[11,19,83,144,162,170,242,253,292],"task":[13],"as":[14,16,70,112,136,185,187,284],"well":[15,186],"availability":[18],"high-quality":[20],"training":[21,37,143,195],"data.":[22],"Here,":[23],"we":[24,45,147,211,257],"describe":[25],"new":[27],"corpora":[28],"systems":[31,43],"biology":[32],"modeling":[33],"language":[34],"BEL":[35,51,53,77,94,97,122,125,149,200,232,255,296],"for":[36,47,244,250],"and":[38,85,132,151,174,181,191,213,236,281],"testing":[39],"relationship":[41,89,188],"extraction":[42,145],"that":[44],"prepared":[46,148],"BioCreative":[49,294],"V":[50,295],"track.":[52],"was":[54,228],"designed":[55],"to":[56,103,155],"capture":[57],"not":[59,259],"only":[60,260],"between":[61],"proteins":[62],"or":[63,73,116,286],"chemicals,":[64,178],"but":[65,267],"also":[66,268],"complex":[67],"events":[68],"such":[69,111,135],"processes":[72],"disease":[74],"states.":[75],"A":[76],"nanopub":[78],"smallest":[81],"unit":[82],"information":[84,131],"represents":[86],"a":[87,137,160,167,239,251],"with":[90,129],"its":[91],"provenance.":[92],"In":[93,120,248],"(called":[96],"statements),":[98],"entities":[100],"are":[101,127],"normalized":[102],"defined":[104],"namespaces":[105],"derived":[107],"from":[108,202],"public":[109],"repositories,":[110],"sequence":[113],"databases,":[114],"MeSH":[115,179],"publicly":[117],"available":[118,154],"ontologies.":[119],"nanopubs,":[123],"statements":[126,201],"associated":[128],"citation":[130],"supportive":[133,205,288],"evidence":[134],"text":[138,206,220,269,277],"excerpt.":[139],"To":[140],"enable":[141],"tools,":[146],"resources":[150,164],"made":[152],"them":[153],"community.":[157],"We":[158],"selected":[159,212],"subset":[161],"these":[163],"focusing":[165],"reduced":[168],"set":[169,252],"namespaces,":[171],"namely,":[172],"human":[173],"mouse":[175],"genes,":[176],"ChEBI":[177],"diseases":[180],"GO":[182],"processes,":[184],"types":[189],"'increases'":[190],"'decreases'.":[192],"The":[193],"published":[194],"corpus":[196],"contains":[197],"11":[198],"000":[199],"over":[203],"6000":[204],"excerpts.":[207,221],"For":[208,222],"method":[209],"evaluation,":[210],"re-annotated":[214],"two":[215,273],"smaller":[216],"subcorpora":[217],"containing":[218],"100":[219,254],"this":[223],"re-annotation,":[224],"inter-annotator":[226],"agreement":[227],"measured":[229],"by":[230,272],"track":[233,297],"evaluation":[234],"environment":[235],"resulted":[237],"maximal":[240],"F-score":[241],"91.18%":[243],"full":[245],"statement":[246],"agreement.":[247],"addition,":[249],"statements,":[256],"do":[258],"provide":[261],"gold":[263],"standard":[264],"expert":[265],"annotations,":[266],"excerpts":[270,278],"pre-selected":[271],"automated":[274],"systems.":[275],"Those":[276],"were":[279],"evaluated":[280],"manually":[282],"annotated":[283],"true":[285],"false":[287],"course":[291],"task.Database":[298],"URL:":[299],"http://wiki.openbel.org/display/BIOC/Datasets.":[300]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":7}],"updated_date":"2026-05-19T21:40:30.786675","created_date":"2025-10-10T00:00:00"}
