{"id":"https://openalex.org/W2460139914","doi":"https://doi.org/10.1093/database/baw105","title":"FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki","display_name":"FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2460139914","doi":"https://doi.org/10.1093/database/baw105","mag":"2460139914","pmid":"https://pubmed.ncbi.nlm.nih.gov/27402679"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw105","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw105","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw105/17474374/baw105.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw105/17474374/baw105.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047548196","display_name":"Imad Abugessaisa","orcid":"https://orcid.org/0000-0001-7458-801X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Imad Abugessaisa","raw_affiliation_strings":["Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008151100","display_name":"Hisashi Shimoji","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hisashi Shimoji","raw_affiliation_strings":["RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":["https://openalex.org/I4210150921"]},{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025283466","display_name":"Serkan Sahin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210126929","display_name":"CE Technologies (United Kingdom)","ror":"https://ror.org/02pw67e25","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210126929"]},{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["GB","JP"],"is_corresponding":false,"raw_author_name":"Serkan Sahin","raw_affiliation_strings":["Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":["https://openalex.org/I4210126929"]},{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","institution_ids":[]},{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007556413","display_name":"Atsushi Kondo","orcid":"https://orcid.org/0000-0002-1175-7485"},"institutions":[{"id":"https://openalex.org/I4210126929","display_name":"CE Technologies (United Kingdom)","ror":"https://ror.org/02pw67e25","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210126929"]},{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["GB","JP"],"is_corresponding":false,"raw_author_name":"Atsushi Kondo","raw_affiliation_strings":["Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":["https://openalex.org/I4210126929"]},{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","institution_ids":[]},{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025327962","display_name":"Jayson Harshbarger","orcid":"https://orcid.org/0000-0002-5188-2045"},"institutions":[{"id":"https://openalex.org/I4210126929","display_name":"CE Technologies (United Kingdom)","ror":"https://ror.org/02pw67e25","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210126929"]},{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["GB","JP"],"is_corresponding":false,"raw_author_name":"Jayson Harshbarger","raw_affiliation_strings":["Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":["https://openalex.org/I4210126929"]},{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","institution_ids":[]},{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038594088","display_name":"Marina Lizio","orcid":"https://orcid.org/0000-0001-7337-7325"},"institutions":[{"id":"https://openalex.org/I4210126929","display_name":"CE Technologies (United Kingdom)","ror":"https://ror.org/02pw67e25","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210126929"]},{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["GB","JP"],"is_corresponding":false,"raw_author_name":"Marina Lizio","raw_affiliation_strings":["Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":["https://openalex.org/I4210126929"]},{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","institution_ids":[]},{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032097008","display_name":"Yoshihide Hayashizaki","orcid":"https://orcid.org/0000-0002-0561-2802"},"institutions":[{"id":"https://openalex.org/I4210100240","display_name":"RIKEN Center for Sustainable Resource Science","ror":"https://ror.org/010rf2m76","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210100240","https://openalex.org/I4210110652"]},{"id":"https://openalex.org/I4210110652","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652"]},{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yoshihide Hayashizaki","raw_affiliation_strings":["RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198, Japan","RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198, Japan","institution_ids":["https://openalex.org/I4210100240"]},{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","institution_ids":["https://openalex.org/I4210150921"]},{"raw_affiliation_string":"RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198, Japan","institution_ids":["https://openalex.org/I4210110652"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072131150","display_name":"Piero Carninci","orcid":"https://orcid.org/0000-0001-7202-7243"},"institutions":[{"id":"https://openalex.org/I4210126929","display_name":"CE Technologies (United Kingdom)","ror":"https://ror.org/02pw67e25","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210126929"]},{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["GB","JP"],"is_corresponding":false,"raw_author_name":"Piero Carninci","raw_affiliation_strings":["Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":["https://openalex.org/I4210126929"]},{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","institution_ids":["https://openalex.org/I4210150921"]},{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066740737","display_name":"Alistair R. R. Forrest","orcid":"https://orcid.org/0000-0003-4543-1675"},"institutions":[{"id":"https://openalex.org/I177877127","display_name":"The University of Western Australia","ror":"https://ror.org/047272k79","country_code":"AU","type":"education","lineage":["https://openalex.org/I177877127"]},{"id":"https://openalex.org/I2799971621","display_name":"Harry Perkins Institute of Medical Research","ror":"https://ror.org/02xz7d723","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2799971621"]},{"id":"https://openalex.org/I4210088912","display_name":"Queen Elizabeth II Medical Centre","ror":"https://ror.org/0071a2k97","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210088912"]},{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["AU","JP"],"is_corresponding":false,"raw_author_name":"Alistair Forrest","raw_affiliation_strings":["Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan Harry Perkins Institute of Medical Research, QEII Medical Centre and Centre for Medical Research, the University of Western Australia, Nedlands, Western Australia, Australia","RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","Harry Perkins Institute of Medical Research, QEII Medical Centre and Centre for Medical Research, the University of Western Australia, Nedlands, Western Australia, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan Harry Perkins Institute of Medical Research, QEII Medical Centre and Centre for Medical Research, the University of Western Australia, Nedlands, Western Australia, Australia","institution_ids":["https://openalex.org/I2799971621"]},{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","institution_ids":["https://openalex.org/I4210150921"]},{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","institution_ids":[]},{"raw_affiliation_string":"Harry Perkins Institute of Medical Research, QEII Medical Centre and Centre for Medical Research, the University of Western Australia, Nedlands, Western Australia, Australia","institution_ids":["https://openalex.org/I2799971621","https://openalex.org/I177877127","https://openalex.org/I4210088912"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066531799","display_name":"Takeya Kasukawa","orcid":"https://orcid.org/0000-0001-5085-0802"},"institutions":[{"id":"https://openalex.org/I4210126929","display_name":"CE Technologies (United Kingdom)","ror":"https://ror.org/02pw67e25","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210126929"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Takeya Kasukawa","raw_affiliation_strings":["Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan takeya.kasukawa@riken.jp","Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan takeya.kasukawa@riken.jp","institution_ids":["https://openalex.org/I4210126929"]},{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051284054","display_name":"Hideya Kawaji","orcid":"https://orcid.org/0000-0002-0575-0308"},"institutions":[{"id":"https://openalex.org/I4210100240","display_name":"RIKEN Center for Sustainable Resource Science","ror":"https://ror.org/010rf2m76","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210100240","https://openalex.org/I4210110652"]},{"id":"https://openalex.org/I4210110652","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652"]},{"id":"https://openalex.org/I4210126929","display_name":"CE Technologies (United Kingdom)","ror":"https://ror.org/02pw67e25","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210126929"]},{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["GB","JP"],"is_corresponding":false,"raw_author_name":"Hideya Kawaji","raw_affiliation_strings":["Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198, Japan Preventive Medicine and Applied Genomics Unit, RIKEN Advanced Center for Computing and Communication, Kanagawa 230-0045, Japan kawaji@gsc.riken.jp","RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198, Japan","Preventive Medicine and Applied Genomics Unit, RIKEN Advanced Center for Computing and Communication, Kanagawa 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198, Japan Preventive Medicine and Applied Genomics Unit, RIKEN Advanced Center for Computing and Communication, Kanagawa 230-0045, Japan kawaji@gsc.riken.jp","institution_ids":["https://openalex.org/I4210126929","https://openalex.org/I4210100240","https://openalex.org/I4210150921"]},{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","institution_ids":["https://openalex.org/I4210150921"]},{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","institution_ids":[]},{"raw_affiliation_string":"RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198, Japan","institution_ids":["https://openalex.org/I4210110652"]},{"raw_affiliation_string":"Preventive Medicine and Applied Genomics Unit, RIKEN Advanced Center for Computing and Communication, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210150921"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5066531799"],"corresponding_institution_ids":["https://openalex.org/I4210126929"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":5.2964,"has_fulltext":false,"cited_by_count":73,"citation_normalized_percentile":{"value":0.96055878,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"2016","issue":null,"first_page":"baw105","last_page":"baw105"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.727045476436615},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6165871024131775},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.545661449432373},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.5215173363685608},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11632674932479858}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.727045476436615},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6165871024131775},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.545661449432373},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.5215173363685608},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11632674932479858},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/database/baw105","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw105","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw105/17474374/baw105.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:27402679","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27402679","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire/592b248b-d491-4bd0-ab1d-4b80ebdd4c16","is_oa":true,"landing_page_url":"https://admin.research-repository.uwa.edu.au/en/publications/592b248b-d491-4bd0-ab1d-4b80ebdd4c16","pdf_url":null,"source":{"id":"https://openalex.org/S4306402523","display_name":"UWA Profiles and Research Repository (University of Western Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177877127","host_organization_name":"The University of Western Australia","host_organization_lineage":["https://openalex.org/I177877127"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Abugessaisa, I, Shimoji, H, Sahin, S, Kondo, A, Harshbarger, J, Lizio, M, Hayashizaki, Y, Carninci, P, Forrest, A & Kasukawa, T & Kawaji, H 2016, 'FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki', Database, vol. 2016, baw105. https://doi.org/10.1093/database/baw105, https://doi.org/10.1093/database/baw105","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pure.atira.dk:publications/592b248b-d491-4bd0-ab1d-4b80ebdd4c16","is_oa":true,"landing_page_url":"https://research-repository.uwa.edu.au/en/publications/592b248b-d491-4bd0-ab1d-4b80ebdd4c16","pdf_url":null,"source":{"id":"https://openalex.org/S4306402523","display_name":"UWA Profiles and Research Repository (University of Western Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177877127","host_organization_name":"The University of Western Australia","host_organization_lineage":["https://openalex.org/I177877127"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Abugessaisa , I , Shimoji , H , Sahin , S , Kondo , A , Harshbarger , J , Lizio , M , Hayashizaki , Y , Carninci , P , Forrest , A , Kasukawa , T , Kawaji , H &amp; Consortium , F 2016 , ' FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki ' , Database , vol. 2016 , baw105 . https://doi.org/10.1093/database/baw105","raw_type":"article"},{"id":"pmh:oai:open-archive.highwire.org:databa:2016/0/baw105","is_oa":false,"landing_page_url":"http://database.oxfordjournals.org/cgi/content/short/2016/0/baw105","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:4940433","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4940433","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baw105","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw105","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw105/17474374/baw105.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.41999998688697815}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W176995893","https://openalex.org/W1898862743","https://openalex.org/W1964733653","https://openalex.org/W1964904043","https://openalex.org/W1985468994","https://openalex.org/W1986223165","https://openalex.org/W1986234964","https://openalex.org/W2041281952","https://openalex.org/W2061747833","https://openalex.org/W2094468530","https://openalex.org/W2105776281","https://openalex.org/W2108797218","https://openalex.org/W2109108939","https://openalex.org/W2109389325","https://openalex.org/W2109488005","https://openalex.org/W2118258530","https://openalex.org/W2118526609","https://openalex.org/W2120141270","https://openalex.org/W2128016314","https://openalex.org/W2130542009","https://openalex.org/W2132073122","https://openalex.org/W2136391357","https://openalex.org/W2137522673","https://openalex.org/W2137854030","https://openalex.org/W2141297584","https://openalex.org/W2148592476","https://openalex.org/W2164683872","https://openalex.org/W2912580958","https://openalex.org/W3147089717","https://openalex.org/W4230612844"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2399513595","https://openalex.org/W4388386498","https://openalex.org/W2390279801","https://openalex.org/W2028462563","https://openalex.org/W2982720988","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W3150324899","https://openalex.org/W2001405890"],"abstract_inverted_index":{"The":[0,25],"Functional":[1],"Annotation":[2],"of":[3,22,57,80,93,116,148,155,161,166,171,192],"the":[4,37,40,48,71,85,91,94,99,125,133,153,156,164,167],"Mammalian":[5],"Genome":[6],"project":[7,27,189],"(FANTOM5)":[8],"mapped":[9],"transcription":[10],"start":[11],"sites":[12],"(TSSs)":[13],"and":[14,54,104,144,194],"measured":[15],"their":[16,50],"activities":[17],"in":[18,65,70,180,190],"a":[19,29,78,110,146,177,186],"diverse":[20],"range":[21],"biological":[23,182],"samples.":[24],"FANTOM5":[26,157],"generated":[28,184],"large":[30],"data":[31,101,149,183],"set;":[32],"including":[33],"detailed":[34],"information":[35,56],"about":[36],"profiled":[38],"samples,":[39],"uncovered":[41],"TSSs":[42],"at":[43],"high":[44],"base-pair":[45],"resolution":[46],"on":[47,84],"genome,":[49],"transcriptional":[51,58],"initiation":[52,119],"activities,":[53],"further":[55],"regulation.":[59],"Data":[60],"sets":[61,150],"to":[62,141],"explore":[63],"transcriptome":[64],"individual":[66],"cellular":[67],"states":[68],"encoded":[69],"mammalian":[72],"genomes":[73],"have":[74],"been":[75],"enriched":[76],"by":[77],"series":[79,147],"additional":[81],"analysis,":[82],"based":[83],"raw":[86],"experimental":[87],"data,":[88],"along":[89,131],"with":[90,132],"progress":[92],"research":[95,188,197],"activities.":[96],"To":[97],"make":[98],"heterogeneous":[100],"set":[102],"accessible":[103],"useful":[105],"for":[106,169],"investigators,":[107],"we":[108],"developed":[109],"web-based":[111],"database":[112],"called":[113],"Semantic":[114,134],"catalog":[115],"Samples,":[117],"Transcription":[118],"And":[120],"Regulators":[121],"(SSTAR).":[122],"SSTAR":[123,175],"utilizes":[124],"open":[126],"source":[127],"wiki":[128],"software":[129],"MediaWiki":[130,135],"(SMW)":[136],"extension,":[137],"which":[138],"provides":[139],"flexibility":[140],"model,":[142],"store,":[143],"display":[145],"produced":[151],"during":[152],"course":[154],"project.":[158],"Our":[159],"use":[160],"SMW":[162],"demonstrates":[163],"utility":[165],"framework":[168],"dissemination":[170],"large-scale":[172,187],"analysis":[173],"results.":[174],"is":[176],"case":[178],"study":[179],"handling":[181],"from":[185],"terms":[191],"maintenance":[193],"growth":[195],"alongside":[196],"activities.Database":[198],"URL:":[199],"http://fantom.gsc.riken.jp/5/sstar/.":[200]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":15},{"year":2016,"cited_by_count":2}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
