{"id":"https://openalex.org/W2460139914","doi":"https://doi.org/10.1093/database/baw105","title":"FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki","display_name":"FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2460139914","doi":"https://doi.org/10.1093/database/baw105","mag":"2460139914","pmid":"https://pubmed.ncbi.nlm.nih.gov/27402679"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw105","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw105","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw105/17474374/baw105.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw105/17474374/baw105.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047548196","display_name":"Imad Abugessaisa","orcid":"https://orcid.org/0000-0001-7458-801X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Imad Abugessaisa","raw_affiliation_strings":["Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan"],"affiliations":[{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008151100","display_name":"Hisashi Shimoji","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hisashi Shimoji","raw_affiliation_strings":["RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021"],"affiliations":[{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":[]},{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025283466","display_name":"Serkan Sahin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Serkan Sahin","raw_affiliation_strings":["Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan"],"affiliations":[{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":[]},{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","institution_ids":["https://openalex.org/I4210150921"]},{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007556413","display_name":"Atsushi Kondo","orcid":"https://orcid.org/0000-0002-1175-7485"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Atsushi Kondo","raw_affiliation_strings":["Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021"],"affiliations":[{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":[]},{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","institution_ids":[]},{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025327962","display_name":"Jayson Harshbarger","orcid":"https://orcid.org/0000-0002-5188-2045"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Jayson Harshbarger","raw_affiliation_strings":["Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan"],"affiliations":[{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":[]},{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","institution_ids":["https://openalex.org/I4210150921"]},{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038594088","display_name":"Marina Lizio","orcid":"https://orcid.org/0000-0001-7337-7325"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Marina Lizio","raw_affiliation_strings":["Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan"],"affiliations":[{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":[]},{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","institution_ids":["https://openalex.org/I4210150921"]},{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032097008","display_name":"Yoshihide Hayashizaki","orcid":"https://orcid.org/0000-0002-0561-2802"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]},{"id":"https://openalex.org/I4210110652","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yoshihide Hayashizaki","raw_affiliation_strings":["RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198, Japan","RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198, Japan"],"affiliations":[{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198, Japan","institution_ids":[]},{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","institution_ids":["https://openalex.org/I4210150921"]},{"raw_affiliation_string":"RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198, Japan","institution_ids":["https://openalex.org/I4210110652"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072131150","display_name":"Piero Carninci","orcid":"https://orcid.org/0000-0001-7202-7243"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Piero Carninci","raw_affiliation_strings":["Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021"],"affiliations":[{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":[]},{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","institution_ids":[]},{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066740737","display_name":"Alistair R. R. Forrest","orcid":"https://orcid.org/0000-0003-4543-1675"},"institutions":[{"id":"https://openalex.org/I4210088912","display_name":"Queen Elizabeth II Medical Centre","ror":"https://ror.org/0071a2k97","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210088912"]},{"id":"https://openalex.org/I177877127","display_name":"University of Western Australia","ror":"https://ror.org/047272k79","country_code":"AU","type":"education","lineage":["https://openalex.org/I177877127"]},{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]},{"id":"https://openalex.org/I2799971621","display_name":"Harry Perkins Institute of Medical Research","ror":"https://ror.org/02xz7d723","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2799971621"]}],"countries":["AU","JP"],"is_corresponding":false,"raw_author_name":"Alistair Forrest","raw_affiliation_strings":["Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan Harry Perkins Institute of Medical Research, QEII Medical Centre and Centre for Medical Research, the University of Western Australia, Nedlands, Western Australia, Australia","Harry Perkins Institute of Medical Research, QEII Medical Centre and Centre for Medical Research, the University of Western Australia, Nedlands, Western Australia, Australia","RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan"],"affiliations":[{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan Harry Perkins Institute of Medical Research, QEII Medical Centre and Centre for Medical Research, the University of Western Australia, Nedlands, Western Australia, Australia","institution_ids":[]},{"raw_affiliation_string":"Harry Perkins Institute of Medical Research, QEII Medical Centre and Centre for Medical Research, the University of Western Australia, Nedlands, Western Australia, Australia","institution_ids":["https://openalex.org/I2799971621","https://openalex.org/I177877127","https://openalex.org/I4210088912"]},{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","institution_ids":["https://openalex.org/I4210150921"]},{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066531799","display_name":"Takeya Kasukawa","orcid":"https://orcid.org/0000-0001-5085-0802"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Takeya Kasukawa","raw_affiliation_strings":["Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan takeya.kasukawa@riken.jp","Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan"],"affiliations":[{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan takeya.kasukawa@riken.jp","institution_ids":[]},{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051284054","display_name":"Hideya Kawaji","orcid":"https://orcid.org/0000-0002-0575-0308"},"institutions":[{"id":"https://openalex.org/I4210110652","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652"]},{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hideya Kawaji","raw_affiliation_strings":["Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198, Japan Preventive Medicine and Applied Genomics Unit, RIKEN Advanced Center for Computing and Communication, Kanagawa 230-0045, Japan kawaji@gsc.riken.jp","RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198, Japan","Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","Preventive Medicine and Applied Genomics Unit, RIKEN Advanced Center for Computing and Communication, Kanagawa 230-0045, Japan","RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021"],"affiliations":[{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198, Japan Preventive Medicine and Applied Genomics Unit, RIKEN Advanced Center for Computing and Communication, Kanagawa 230-0045, Japan kawaji@gsc.riken.jp","institution_ids":[]},{"raw_affiliation_string":"RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198, Japan","institution_ids":["https://openalex.org/I4210110652"]},{"raw_affiliation_string":"Division of Genomic Technologies (DGT), RIKEN Center for Life Science Technologies (CLST), Kanagawa 230-0045, Japan","institution_ids":[]},{"raw_affiliation_string":"Preventive Medicine and Applied Genomics Unit, RIKEN Advanced Center for Computing and Communication, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210150921"]},{"raw_affiliation_string":"RIKEN Omics Science Center (OSC), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan\u2021","institution_ids":["https://openalex.org/I4210150921"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5066531799"],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":5.1686,"has_fulltext":false,"cited_by_count":73,"citation_normalized_percentile":{"value":0.95966162,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"2016","issue":null,"first_page":"baw105","last_page":"baw105"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.727045476436615},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6165871024131775},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.545661449432373},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.5215173363685608},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11632674932479858}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.727045476436615},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6165871024131775},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.545661449432373},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.5215173363685608},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11632674932479858},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/database/baw105","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw105","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw105/17474374/baw105.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:27402679","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27402679","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire/592b248b-d491-4bd0-ab1d-4b80ebdd4c16","is_oa":true,"landing_page_url":"https://admin.research-repository.uwa.edu.au/en/publications/592b248b-d491-4bd0-ab1d-4b80ebdd4c16","pdf_url":null,"source":{"id":"https://openalex.org/S4306402523","display_name":"UWA Profiles and Research Repository (University of Western Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177877127","host_organization_name":"The University of Western Australia","host_organization_lineage":["https://openalex.org/I177877127"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Abugessaisa, I, Shimoji, H, Sahin, S, Kondo, A, Harshbarger, J, Lizio, M, Hayashizaki, Y, Carninci, P, Forrest, A & Kasukawa, T & Kawaji, H 2016, 'FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki', Database, vol. 2016, baw105. https://doi.org/10.1093/database/baw105, https://doi.org/10.1093/database/baw105","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.atira.dk:publications/592b248b-d491-4bd0-ab1d-4b80ebdd4c16","is_oa":true,"landing_page_url":"https://research-repository.uwa.edu.au/en/publications/592b248b-d491-4bd0-ab1d-4b80ebdd4c16","pdf_url":null,"source":{"id":"https://openalex.org/S4306402523","display_name":"UWA Profiles and Research Repository (University of Western Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177877127","host_organization_name":"The University of Western Australia","host_organization_lineage":["https://openalex.org/I177877127"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Abugessaisa, I, Shimoji, H, Sahin, S, Kondo, A, Harshbarger, J, Lizio, M, Hayashizaki, Y, Carninci, P, Forrest, A & Kasukawa, T & Kawaji, H 2016, 'FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki', Database, vol. 2016, baw105. https://doi.org/10.1093/database/baw105, https://doi.org/10.1093/database/baw105","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:open-archive.highwire.org:databa:2016/0/baw105","is_oa":false,"landing_page_url":"http://database.oxfordjournals.org/cgi/content/short/2016/0/baw105","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:4940433","is_oa":true,"landing_page_url":"http://doi.org/10.1093/database/baw105","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baw105","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw105","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw105/17474374/baw105.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.41999998688697815}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2460139914.pdf","grobid_xml":"https://content.openalex.org/works/W2460139914.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W176995893","https://openalex.org/W1898862743","https://openalex.org/W1964733653","https://openalex.org/W1964904043","https://openalex.org/W1985468994","https://openalex.org/W1986223165","https://openalex.org/W1986234964","https://openalex.org/W2041281952","https://openalex.org/W2061747833","https://openalex.org/W2094468530","https://openalex.org/W2105776281","https://openalex.org/W2108797218","https://openalex.org/W2109108939","https://openalex.org/W2109389325","https://openalex.org/W2109488005","https://openalex.org/W2118258530","https://openalex.org/W2118526609","https://openalex.org/W2120141270","https://openalex.org/W2128016314","https://openalex.org/W2130542009","https://openalex.org/W2132073122","https://openalex.org/W2136391357","https://openalex.org/W2137522673","https://openalex.org/W2137854030","https://openalex.org/W2141297584","https://openalex.org/W2148592476","https://openalex.org/W2164683872","https://openalex.org/W2912580958","https://openalex.org/W3147089717","https://openalex.org/W4230612844"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2399513595","https://openalex.org/W4388386498","https://openalex.org/W2390279801","https://openalex.org/W2028462563","https://openalex.org/W2982720988","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W3150324899","https://openalex.org/W2001405890"],"abstract_inverted_index":{"The":[0,25],"Functional":[1],"Annotation":[2],"of":[3,22,57,80,93,116,148,155,161,166,171,192],"the":[4,37,40,48,71,85,91,94,99,125,133,153,156,164,167],"Mammalian":[5],"Genome":[6],"project":[7,27,189],"(FANTOM5)":[8],"mapped":[9],"transcription":[10],"start":[11],"sites":[12],"(TSSs)":[13],"and":[14,54,104,144,194],"measured":[15],"their":[16,50],"activities":[17],"in":[18,65,70,180,190],"a":[19,29,78,110,146,177,186],"diverse":[20],"range":[21],"biological":[23,182],"samples.":[24],"FANTOM5":[26,157],"generated":[28,184],"large":[30],"data":[31,101,149,183],"set;":[32],"including":[33],"detailed":[34],"information":[35,56],"about":[36],"profiled":[38],"samples,":[39],"uncovered":[41],"TSSs":[42],"at":[43],"high":[44],"base-pair":[45],"resolution":[46],"on":[47,84],"genome,":[49],"transcriptional":[51,58],"initiation":[52,119],"activities,":[53],"further":[55],"regulation.":[59],"Data":[60],"sets":[61,150],"to":[62,141],"explore":[63],"transcriptome":[64],"individual":[66],"cellular":[67],"states":[68],"encoded":[69],"mammalian":[72],"genomes":[73],"have":[74],"been":[75],"enriched":[76],"by":[77],"series":[79,147],"additional":[81],"analysis,":[82],"based":[83],"raw":[86],"experimental":[87],"data,":[88],"along":[89,131],"with":[90,132],"progress":[92],"research":[95,188,197],"activities.":[96],"To":[97],"make":[98],"heterogeneous":[100],"set":[102],"accessible":[103],"useful":[105],"for":[106,169],"investigators,":[107],"we":[108],"developed":[109],"web-based":[111],"database":[112],"called":[113],"Semantic":[114,134],"catalog":[115],"Samples,":[117],"Transcription":[118],"And":[120],"Regulators":[121],"(SSTAR).":[122],"SSTAR":[123,175],"utilizes":[124],"open":[126],"source":[127],"wiki":[128],"software":[129],"MediaWiki":[130,135],"(SMW)":[136],"extension,":[137],"which":[138],"provides":[139],"flexibility":[140],"model,":[142],"store,":[143],"display":[145],"produced":[151],"during":[152],"course":[154],"project.":[158],"Our":[159],"use":[160],"SMW":[162],"demonstrates":[163],"utility":[165],"framework":[168],"dissemination":[170],"large-scale":[172,187],"analysis":[173],"results.":[174],"is":[176],"case":[178],"study":[179],"handling":[181],"from":[185],"terms":[191],"maintenance":[193],"growth":[195],"alongside":[196],"activities.Database":[198],"URL:":[199],"http://fantom.gsc.riken.jp/5/sstar/.":[200]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":15},{"year":2016,"cited_by_count":2}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
