{"id":"https://openalex.org/W2470124677","doi":"https://doi.org/10.1093/database/baw098","title":"neXtA<sub>5</sub>: accelerating annotation of articles via automated approaches in neXtProt","display_name":"neXtA<sub>5</sub>: accelerating annotation of articles via automated approaches in neXtProt","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2470124677","doi":"https://doi.org/10.1093/database/baw098","mag":"2470124677","pmid":"https://pubmed.ncbi.nlm.nih.gov/27374119"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw098","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw098","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw098/8224836/baw098.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw098/8224836/baw098.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049986775","display_name":"Luc Mottin","orcid":"https://orcid.org/0000-0002-9614-9293"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Luc Mottin","raw_affiliation_strings":["BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department SIB Text Mining, Swiss Institute of Bioinformatics luc.mottin@hesge.ch patrick.ruch@hesge.ch","BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department","SIB Text Mining, Swiss Institute of Bioinformatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department SIB Text Mining, Swiss Institute of Bioinformatics luc.mottin@hesge.ch patrick.ruch@hesge.ch","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I173439891"]},{"raw_affiliation_string":"BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department","institution_ids":["https://openalex.org/I173439891"]},{"raw_affiliation_string":"SIB Text Mining, Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091440467","display_name":"Julien Gobeill","orcid":"https://orcid.org/0000-0001-9809-7741"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Julien Gobeill","raw_affiliation_strings":["BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department SIB Text Mining, Swiss Institute of Bioinformatics","SIB Text Mining, Swiss Institute of Bioinformatics","BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department SIB Text Mining, Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"SIB Text Mining, Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department","institution_ids":["https://openalex.org/I173439891"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017034341","display_name":"Emilie Pasche","orcid":"https://orcid.org/0000-0002-9118-5762"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Emilie Pasche","raw_affiliation_strings":["BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department SIB Text Mining, Swiss Institute of Bioinformatics","BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department","SIB Text Mining, Swiss Institute of Bioinformatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department SIB Text Mining, Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department","institution_ids":["https://openalex.org/I173439891"]},{"raw_affiliation_string":"SIB Text Mining, Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086411804","display_name":"Pierre-Andr\u00e9 Michel","orcid":"https://orcid.org/0000-0002-7023-1045"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Pierre-Andr\u00e9 Michel","raw_affiliation_strings":["Calipho Group, Swiss Institute of Bioinformatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Calipho Group, Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050374215","display_name":"Isabelle Cusin","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Isabelle Cusin","raw_affiliation_strings":["Calipho Group, Swiss Institute of Bioinformatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Calipho Group, Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014365246","display_name":"Pascale Gaudet","orcid":"https://orcid.org/0000-0003-1813-6857"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Pascale Gaudet","raw_affiliation_strings":["Calipho Group, Swiss Institute of Bioinformatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Calipho Group, Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042384742","display_name":"Patrick Ruch","orcid":"https://orcid.org/0000-0002-3374-2962"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Patrick Ruch","raw_affiliation_strings":["BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department SIB Text Mining, Swiss Institute of Bioinformatics","BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department","SIB Text Mining, Swiss Institute of Bioinformatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department SIB Text Mining, Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department","institution_ids":["https://openalex.org/I173439891"]},{"raw_affiliation_string":"SIB Text Mining, Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5049986775"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I173439891"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.1221,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.78680528,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2016","issue":null,"first_page":"baw098","last_page":"baw098"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7644014358520508},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.7432975769042969},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.733884334564209},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.6946339011192322},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.6284098625183105},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6022703647613525},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.5684286952018738},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5482800006866455},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.4643998444080353},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.46244221925735474},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.4484986960887909},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3789770007133484},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3265123665332794},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.25127720832824707},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18331360816955566},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08667925000190735}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7644014358520508},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.7432975769042969},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.733884334564209},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.6946339011192322},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.6284098625183105},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6022703647613525},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.5684286952018738},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5482800006866455},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.4643998444080353},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.46244221925735474},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.4484986960887909},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3789770007133484},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3265123665332794},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.25127720832824707},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18331360816955566},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08667925000190735},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/database/baw098","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw098","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw098/8224836/baw098.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:27374119","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27374119","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:unige.ch:unige:85863","is_oa":true,"landing_page_url":"https://archive-ouverte.unige.ch/unige:85863","pdf_url":null,"source":{"id":"https://openalex.org/S4306402259","display_name":"Archive ouverte UNIGE (University of Geneva)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114457229","host_organization_name":"University of Geneva","host_organization_lineage":["https://openalex.org/I114457229"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ISSN: 1758-0463","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:hesso.tind.io:1727","is_oa":false,"landing_page_url":"http://arodes.hes-so.ch/record/1727","pdf_url":null,"source":{"id":"https://openalex.org/S4306402432","display_name":"ArODES (HES-SO (https://www.hes-so.ch/))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210088449","host_organization_name":"HES-SO Gen\u00e8ve","host_organization_lineage":["https://openalex.org/I4210088449"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arodes.hes-so.ch/record/1727","raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:databa:2016/0/baw098","is_oa":false,"landing_page_url":"http://database.oxfordjournals.org/cgi/content/short/2016/0/baw098","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:4930835","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4930835","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baw098","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw098","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw098/8224836/baw098.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1039912989","display_name":"neXtpresso, accelerating annotation via automated approaches","funder_award_id":"153437","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G525758720","display_name":null,"funder_award_id":"SNF #153437","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"}],"funders":[{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2470124677.pdf","grobid_xml":"https://content.openalex.org/works/W2470124677.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W8870360","https://openalex.org/W73613318","https://openalex.org/W124454490","https://openalex.org/W172597201","https://openalex.org/W1574901103","https://openalex.org/W1623284047","https://openalex.org/W1626162317","https://openalex.org/W1649793500","https://openalex.org/W1964670939","https://openalex.org/W1973435495","https://openalex.org/W1991224063","https://openalex.org/W1992512552","https://openalex.org/W2007069550","https://openalex.org/W2008857142","https://openalex.org/W2017077050","https://openalex.org/W2040998119","https://openalex.org/W2053673723","https://openalex.org/W2053724458","https://openalex.org/W2070620842","https://openalex.org/W2076632311","https://openalex.org/W2078396654","https://openalex.org/W2087779040","https://openalex.org/W2094726706","https://openalex.org/W2098174226","https://openalex.org/W2101727078","https://openalex.org/W2103017472","https://openalex.org/W2105157020","https://openalex.org/W2112466127","https://openalex.org/W2118582067","https://openalex.org/W2121802207","https://openalex.org/W2132784310","https://openalex.org/W2141773193","https://openalex.org/W2142741334","https://openalex.org/W2147558260","https://openalex.org/W2149427297","https://openalex.org/W2162965868","https://openalex.org/W2166817943","https://openalex.org/W2169425537","https://openalex.org/W2205636404","https://openalex.org/W2274403424","https://openalex.org/W2296534770","https://openalex.org/W2315579478","https://openalex.org/W2546848075","https://openalex.org/W2547366414","https://openalex.org/W2604823638","https://openalex.org/W6600367688","https://openalex.org/W6694360531"],"related_works":["https://openalex.org/W2169425537","https://openalex.org/W2169589518","https://openalex.org/W2086443788","https://openalex.org/W2762474792","https://openalex.org/W2111303602","https://openalex.org/W2772431536","https://openalex.org/W2951897737","https://openalex.org/W2891678595","https://openalex.org/W2097106271","https://openalex.org/W2124450377"],"abstract_inverted_index":{"The":[0,56,90,116,135,162,185,238],"rapid":[1],"increase":[2],"in":[3,96,158,264],"the":[4,20,38,78,86,126,139,152,159,180,188,202,208,211,227,230,244,261,291],"number":[5],"of":[6,52,85,141,154,182,187,229,247,282],"published":[7],"articles":[8],"poses":[9],"a":[10,48,60,97,170,280],"challenge":[11],"for":[12,40,101,131,193,214,217,222,249],"curated":[13],"databases":[14],"to":[15,143,178,259],"remain":[16],"up-to-date.":[17],"To":[18],"help":[19],"scientific":[21],"community":[22],"and":[23,81,110,220],"database":[24],"curators":[25,248],"deal":[26],"with":[27,198,279],"this":[28],"issue,":[29],"we":[30],"have":[31],"developed":[32],"an":[33,120,145],"application,":[34],"neXtA5,":[35,46],"which":[36,64,124,148,173,200,268],"prioritizes":[37],"literature":[39],"specific":[41,270],"curation":[42,49,252,262],"requirements.":[43],"Our":[44],"system,":[45],"is":[47,59,119,190,201,210],"service":[50],"composed":[51],"three":[53,75,250],"main":[54],"elements.":[55],"first":[57],"component":[58,118,137],"named-entity":[61],"recognition":[62],"module,":[63],"annotates":[65],"MEDLINE":[66,129],"over":[67],"some":[68],"predefined":[69],"axes.":[70,253],"This":[71],"report":[72],"focuses":[73],"on":[74],"axes:":[76],"Diseases,":[77,215],"Molecular":[79,218],"Function":[80],"Biological":[82,223],"Process":[83,224],"sub-ontologies":[84],"Gene":[87],"Ontology":[88],"(GO).":[89],"automatic":[91],"annotations":[92],"are":[93,113,166,256,286],"then":[94],"stored":[95,157],"local":[98],"database,":[99],"BioMed,":[100],"each":[102,183,194],"annotation":[103,181,293],"axis.":[104,184],"Additional":[105],"entities":[106],"such":[107],"as":[108,156],"species":[109],"chemical":[111],"compounds":[112],"also":[114],"identified.":[115],"second":[117],"existing":[121],"search":[122,240,245],"engine,":[123],"retrieves":[125],"most":[127,206],"relevant":[128],"records":[130],"any":[132],"given":[133],"query.":[134],"third":[136],"uses":[138],"content":[140],"BioMed":[142],"generate":[144],"axis-specific":[146],"ranking,":[147],"takes":[149],"into":[150,290],"account":[151],"density":[153],"named-entities":[155],"Biomed":[160],"database.":[161],"two":[163],"ranked":[164],"lists":[165],"ultimately":[167],"merged":[168],"using":[169],"linear":[171],"combination,":[172],"has":[174],"been":[175],"specifically":[176],"tuned":[177],"support":[179],"fine-tuning":[186],"coefficients":[189],"formally":[191],"reported":[192],"axis-driven":[195],"search.":[196],"Compared":[197],"PubMed,":[199],"system":[203],"used":[204],"by":[205],"curators,":[207],"improvement":[209],"following:":[212],"+231%":[213],"+236%":[216],"Functions":[219],"+3153%":[221],"when":[225],"measuring":[226],"precision":[228],"top-returned":[231],"PMID":[232],"(P0":[233],"or":[234],"mean":[235],"reciprocal":[236],"rank).":[237],"current":[239],"methods":[241],"significantly":[242],"improve":[243],"effectiveness":[246],"important":[251],"Further":[254],"experiments":[255],"being":[257,288],"performed":[258],"extend":[260],"types,":[263],"particular":[265],"protein-protein":[266],"interactions,":[267],"require":[269],"relationship":[271],"extraction":[272],"capabilities.":[273],"In":[274],"parallel,":[275],"user-friendly":[276],"interfaces":[277],"powered":[278],"set":[281],"JSON":[283],"web":[284],"services":[285],"currently":[287],"implemented":[289],"neXtProt":[292],"pipeline.Available":[294],"on:":[295],"http://babar.unige.ch:8082/neXtA5Database":[296],"URL:":[297],"http://babar.unige.ch:8082/neXtA5/fetcher.jsp.":[298]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":1}],"updated_date":"2026-07-26T07:53:14.480251","created_date":"2016-07-22T00:00:00"}
