{"id":"https://openalex.org/W2470124677","doi":"https://doi.org/10.1093/database/baw098","title":"neXtA<sub>5</sub>: accelerating annotation of articles via automated approaches in neXtProt","display_name":"neXtA<sub>5</sub>: accelerating annotation of articles via automated approaches in neXtProt","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2470124677","doi":"https://doi.org/10.1093/database/baw098","mag":"2470124677"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw098","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw098","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw098/8224836/baw098.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw098/8224836/baw098.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049986775","display_name":"Luc Mottin","orcid":"https://orcid.org/0000-0002-9614-9293"},"institutions":[{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Luc Mottin","raw_affiliation_strings":["BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department","SIB Text Mining, Swiss Institute of Bioinformatics"],"affiliations":[{"raw_affiliation_string":"BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department","institution_ids":["https://openalex.org/I173439891"]},{"raw_affiliation_string":"SIB Text Mining, Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091440467","display_name":"Julien Gobeill","orcid":"https://orcid.org/0000-0001-9809-7741"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Julien Gobeill","raw_affiliation_strings":["BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department","SIB Text Mining, Swiss Institute of Bioinformatics"],"affiliations":[{"raw_affiliation_string":"BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department","institution_ids":["https://openalex.org/I173439891"]},{"raw_affiliation_string":"SIB Text Mining, Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017034341","display_name":"Emilie Pasche","orcid":"https://orcid.org/0000-0002-9118-5762"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Emilie Pasche","raw_affiliation_strings":["BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department","SIB Text Mining, Swiss Institute of Bioinformatics"],"affiliations":[{"raw_affiliation_string":"BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department","institution_ids":["https://openalex.org/I173439891"]},{"raw_affiliation_string":"SIB Text Mining, Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086411804","display_name":"Pierre-Andr\u00e9 Michel","orcid":"https://orcid.org/0000-0002-7023-1045"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Pierre-Andr\u00e9 Michel","raw_affiliation_strings":["Calipho Group, Swiss Institute of Bioinformatics"],"affiliations":[{"raw_affiliation_string":"Calipho Group, Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050374215","display_name":"Isabelle Cusin","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Isabelle Cusin","raw_affiliation_strings":["Calipho Group, Swiss Institute of Bioinformatics"],"affiliations":[{"raw_affiliation_string":"Calipho Group, Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014365246","display_name":"Pascale Gaudet","orcid":"https://orcid.org/0000-0003-1813-6857"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Pascale Gaudet","raw_affiliation_strings":["Calipho Group, Swiss Institute of Bioinformatics"],"affiliations":[{"raw_affiliation_string":"Calipho Group, Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042384742","display_name":"Patrick Ruch","orcid":"https://orcid.org/0000-0002-3374-2962"},"institutions":[{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Patrick Ruch","raw_affiliation_strings":["BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department","SIB Text Mining, Swiss Institute of Bioinformatics"],"affiliations":[{"raw_affiliation_string":"BiTeM Group, University of Applied Sciences, Western Switzerland-HEG Gen\u00e8ve, Information Science Department","institution_ids":["https://openalex.org/I173439891"]},{"raw_affiliation_string":"SIB Text Mining, Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5049986775"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I173439891"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.2203,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.80437911,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2016","issue":null,"first_page":"baw098","last_page":"baw098"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7644014358520508},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.7432975769042969},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.733884334564209},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.6946339011192322},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.6284098625183105},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6022703647613525},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.5684286952018738},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5482800006866455},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.4643998444080353},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.46244221925735474},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.4484986960887909},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3789770007133484},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3265123665332794},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.25127720832824707},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18331360816955566},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08667925000190735}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7644014358520508},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.7432975769042969},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.733884334564209},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.6946339011192322},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.6284098625183105},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6022703647613525},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.5684286952018738},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5482800006866455},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.4643998444080353},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.46244221925735474},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.4484986960887909},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3789770007133484},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3265123665332794},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.25127720832824707},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18331360816955566},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08667925000190735},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1093/database/baw098","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw098","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw098/8224836/baw098.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmh:oai:unige.ch:unige:85863","is_oa":true,"landing_page_url":"https://archive-ouverte.unige.ch/unige:85863","pdf_url":null,"source":{"id":"https://openalex.org/S4306402259","display_name":"Archive ouverte UNIGE (University of Geneva)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114457229","host_organization_name":"University of Geneva","host_organization_lineage":["https://openalex.org/I114457229"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ISSN: 1758-0463","raw_type":"Text"},{"id":"pmh:oai:hesso.tind.io:1727","is_oa":false,"landing_page_url":"http://arodes.hes-so.ch/record/1727","pdf_url":null,"source":{"id":"https://openalex.org/S4306402432","display_name":"ArODES (HES-SO (https://www.hes-so.ch/))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210088449","host_organization_name":"HES-SO Gen\u00e8ve","host_organization_lineage":["https://openalex.org/I4210088449"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arodes.hes-so.ch/record/1727","raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:databa:2016/0/baw098","is_oa":false,"landing_page_url":"http://database.oxfordjournals.org/cgi/content/short/2016/0/baw098","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:4930835","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4930835","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baw098","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw098","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw098/8224836/baw098.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1039912989","display_name":"neXtpresso, accelerating annotation via automated approaches","funder_award_id":"153437","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G482349970","display_name":"Syst\u00e8mes magn\u00e9tiques complexes.","funder_award_id":"53437","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G525758720","display_name":null,"funder_award_id":"SNF #153437","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G701605948","display_name":"Spatio-temporalen Aktivierung von RhoA in lebenden Zellen.","funder_award_id":"67655","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G711131400","display_name":"Urner Namenbuch. I Band","funder_award_id":"15343","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"}],"funders":[{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2470124677.pdf","grobid_xml":"https://content.openalex.org/works/W2470124677.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W8870360","https://openalex.org/W73613318","https://openalex.org/W124454490","https://openalex.org/W172597201","https://openalex.org/W1574901103","https://openalex.org/W1623284047","https://openalex.org/W1626162317","https://openalex.org/W1649793500","https://openalex.org/W1964670939","https://openalex.org/W1973435495","https://openalex.org/W1991224063","https://openalex.org/W1992512552","https://openalex.org/W2007069550","https://openalex.org/W2008857142","https://openalex.org/W2017077050","https://openalex.org/W2040998119","https://openalex.org/W2053673723","https://openalex.org/W2053724458","https://openalex.org/W2070620842","https://openalex.org/W2076632311","https://openalex.org/W2078396654","https://openalex.org/W2087779040","https://openalex.org/W2094726706","https://openalex.org/W2098174226","https://openalex.org/W2101727078","https://openalex.org/W2103017472","https://openalex.org/W2105157020","https://openalex.org/W2112466127","https://openalex.org/W2118582067","https://openalex.org/W2121802207","https://openalex.org/W2132784310","https://openalex.org/W2141773193","https://openalex.org/W2142741334","https://openalex.org/W2147558260","https://openalex.org/W2149427297","https://openalex.org/W2162965868","https://openalex.org/W2166817943","https://openalex.org/W2169425537","https://openalex.org/W2205636404","https://openalex.org/W2274403424","https://openalex.org/W2296534770","https://openalex.org/W2315579478","https://openalex.org/W2546848075","https://openalex.org/W2547366414","https://openalex.org/W2604823638","https://openalex.org/W6600367688","https://openalex.org/W6694360531"],"related_works":["https://openalex.org/W2169425537","https://openalex.org/W2169589518","https://openalex.org/W2086443788","https://openalex.org/W2762474792","https://openalex.org/W2111303602","https://openalex.org/W2772431536","https://openalex.org/W2951897737","https://openalex.org/W2891678595","https://openalex.org/W2097106271","https://openalex.org/W2124450377"],"abstract_inverted_index":{"The":[0,60,94,120,139,166,189,242],"rapid":[1],"increase":[2],"in":[3,100,162,268],"the":[4,20,40,82,90,130,143,156,163,184,192,206,212,215,231,234,248,265,295],"number":[5],"of":[6,56,89,145,158,186,191,233,251,286],"published":[7],"articles":[8],"poses":[9],"a":[10,52,64,101,174,284],"challenge":[11],"for":[12,42,105,135,197,218,221,226,253],"curated":[13],"databases":[14],"to":[15,147,182,263],"remain":[16],"up-to-date.":[17],"To":[18],"help":[19],"scientific":[21],"community":[22],"and":[23,85,114,224],"database":[24],"curators":[25,252],"deal":[26],"with":[27,202,283],"this":[28],"issue,":[29],"we":[30],"have":[31],"developed":[32],"an":[33,124,149],"application,":[34],"neXtA":[35,48],"5":[36,49],",":[37,50],"which":[38,68,128,152,177,204,272],"prioritizes":[39],"literature":[41],"specific":[43,274],"curation":[44,53,256,266],"requirements.":[45],"Our":[46],"system,":[47],"is":[51,63,123,194,205,214],"service":[54],"composed":[55],"three":[57,79,254],"main":[58],"elements.":[59],"first":[61],"component":[62,122,141],"named-entity":[65],"recognition":[66],"module,":[67],"annotates":[69],"MEDLINE":[70,133],"over":[71],"some":[72],"predefined":[73],"axes.":[74,257],"This":[75],"report":[76],"focuses":[77],"on":[78],"axes:":[80],"Diseases,":[81,219],"Molecular":[83,222],"Function":[84],"Biological":[86,227],"Process":[87,228],"sub-ontologies":[88],"Gene":[91],"Ontology":[92],"(GO).":[93],"automatic":[95],"annotations":[96],"are":[97,117,170,260,290],"then":[98],"stored":[99,161],"local":[102],"database,":[103],"BioMed,":[104],"each":[106,187,198],"annotation":[107,185,297],"axis.":[108,188],"Additional":[109],"entities":[110],"such":[111],"as":[112,160],"species":[113],"chemical":[115],"compounds":[116],"also":[118],"identified.":[119],"second":[121],"existing":[125],"search":[126,244,249],"engine,":[127],"retrieves":[129],"most":[131,210],"relevant":[132],"records":[134],"any":[136],"given":[137],"query.":[138],"third":[140],"uses":[142],"content":[144],"BioMed":[146],"generate":[148],"axis-specific":[150],"ranking,":[151],"takes":[153],"into":[154,294],"account":[155],"density":[157],"named-entities":[159],"Biomed":[164],"database.":[165],"two":[167],"ranked":[168],"lists":[169],"ultimately":[171],"merged":[172],"using":[173],"linear":[175],"combination,":[176],"has":[178],"been":[179],"specifically":[180],"tuned":[181],"support":[183],"fine-tuning":[190],"coefficients":[193],"formally":[195],"reported":[196],"axis-driven":[199],"search.":[200],"Compared":[201],"PubMed,":[203],"system":[207],"used":[208],"by":[209],"curators,":[211],"improvement":[213],"following:":[216],"231%":[217],"236%":[220],"Functions":[223],"3153%":[225],"when":[229],"measuring":[230],"precision":[232],"topreturned":[235],"PMID":[236],"(P0":[237],"or":[238],"mean":[239],"reciprocal":[240],"rank).":[241],"current":[243],"methods":[245],"significantly":[246],"improve":[247],"effectiveness":[250],"important":[255],"Further":[258],"experiments":[259],"being":[261,292],"performed":[262],"extend":[264],"types,":[267],"particular":[269],"protein-protein":[270],"interactions,":[271],"require":[273],"relationship":[275],"extraction":[276],"capabilities.":[277],"In":[278],"parallel,":[279],"userfriendly":[280],"interfaces":[281],"powered":[282],"set":[285],"JSON":[287],"web":[288],"services":[289],"currently":[291],"implemented":[293],"neXtProt":[296],"pipeline.":[298]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2016-07-22T00:00:00"}
