{"id":"https://openalex.org/W2429565568","doi":"https://doi.org/10.1093/database/baw094","title":"Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text","display_name":"Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2429565568","doi":"https://doi.org/10.1093/database/baw094","mag":"2429565568","pmid":"https://pubmed.ncbi.nlm.nih.gov/27307137"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw094","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw094","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw094/8224804/baw094.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw094/8224804/baw094.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072446636","display_name":"\u00c1lex Bravo","orcid":"https://orcid.org/0000-0001-5999-6269"},"institutions":[{"id":"https://openalex.org/I4210136145","display_name":"Municipal Institute for Medical Research","ror":"https://ror.org/039evc422","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210136145"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"\u00c0lex Bravo","raw_affiliation_strings":["Research Programme on Biomedical Informatics (GRIB), IMIM, UPF, Barcelona, Spain and"],"affiliations":[{"raw_affiliation_string":"Research Programme on Biomedical Informatics (GRIB), IMIM, UPF, Barcelona, Spain and","institution_ids":["https://openalex.org/I4210136145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026736101","display_name":"Tong Shu Li","orcid":null},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tong Shu Li","raw_affiliation_strings":["Department of Molecular and Experimental Medicine, the Scripps Research Institute, La Jolla, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular and Experimental Medicine, the Scripps Research Institute, La Jolla, CA, USA","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045408201","display_name":"Andrew I. Su","orcid":"https://orcid.org/0000-0002-9859-4104"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew I. Su","raw_affiliation_strings":["Department of Molecular and Experimental Medicine, the Scripps Research Institute, La Jolla, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular and Experimental Medicine, the Scripps Research Institute, La Jolla, CA, USA","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087499135","display_name":"Benjamin M. Good","orcid":"https://orcid.org/0000-0002-7334-7852"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin M. Good","raw_affiliation_strings":["Department of Molecular and Experimental Medicine, the Scripps Research Institute, La Jolla, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular and Experimental Medicine, the Scripps Research Institute, La Jolla, CA, USA","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028427590","display_name":"Laura I. Furlong","orcid":"https://orcid.org/0000-0002-9383-528X"},"institutions":[{"id":"https://openalex.org/I4210136145","display_name":"Municipal Institute for Medical Research","ror":"https://ror.org/039evc422","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210136145"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Laura I. Furlong","raw_affiliation_strings":["Research Programme on Biomedical Informatics (GRIB), IMIM, UPF, Barcelona, Spain and lfurlong@imim.es","Research Programme on Biomedical Informatics (GRIB), IMIM, UPF, Barcelona, Spain and"],"affiliations":[{"raw_affiliation_string":"Research Programme on Biomedical Informatics (GRIB), IMIM, UPF, Barcelona, Spain and lfurlong@imim.es","institution_ids":[]},{"raw_affiliation_string":"Research Programme on Biomedical Informatics (GRIB), IMIM, UPF, Barcelona, Spain and","institution_ids":["https://openalex.org/I4210136145"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5072446636"],"corresponding_institution_ids":["https://openalex.org/I4210136145"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.9175,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.86033167,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2016","issue":null,"first_page":"baw094","last_page":"baw094"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9821000099182129,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/crowdsourcing","display_name":"Crowdsourcing","score":0.9265516996383667},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6519731283187866},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5230183005332947},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.460244357585907},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4473938047885895},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.42104238271713257},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3815267086029053},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.33816424012184143}],"concepts":[{"id":"https://openalex.org/C62230096","wikidata":"https://www.wikidata.org/wiki/Q275969","display_name":"Crowdsourcing","level":2,"score":0.9265516996383667},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6519731283187866},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5230183005332947},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.460244357585907},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4473938047885895},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.42104238271713257},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3815267086029053},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.33816424012184143}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D063045","descriptor_name":"Crowdsourcing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D063045","descriptor_name":"Crowdsourcing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D063045","descriptor_name":"Crowdsourcing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D063045","descriptor_name":"Crowdsourcing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D063045","descriptor_name":"Crowdsourcing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D063045","descriptor_name":"Crowdsourcing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D064419","descriptor_name":"Chemically-Induced Disorders","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064419","descriptor_name":"Chemically-Induced Disorders","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064419","descriptor_name":"Chemically-Induced Disorders","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064419","descriptor_name":"Chemically-Induced Disorders","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D064419","descriptor_name":"Chemically-Induced Disorders","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D064419","descriptor_name":"Chemically-Induced Disorders","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/baw094","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw094","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw094/8224804/baw094.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:27307137","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27307137","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:repositori.upf.edu:10230/27762","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/27762","pdf_url":null,"source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:open-archive.highwire.org:databa:2016/0/baw094","is_oa":false,"landing_page_url":"http://database.oxfordjournals.org/cgi/content/short/2016/0/baw094","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:4908671","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4908671","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baw094","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw094","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw094/8224804/baw094.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1778407115","display_name":null,"funder_award_id":"115372","funder_id":"https://openalex.org/F4320326631","funder_display_name":"Innovative Medicines Initiative"},{"id":"https://openalex.org/G2759350490","display_name":null,"funder_award_id":"115191","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G3044824611","display_name":null,"funder_award_id":"115735","funder_id":"https://openalex.org/F4320314178","funder_display_name":"European Federation of Pharmaceutical Industries and Associations"},{"id":"https://openalex.org/G3222439407","display_name":null,"funder_award_id":"PI13/00082","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G3981126665","display_name":null,"funder_award_id":"Seventh Framework Programme","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4108925770","display_name":null,"funder_award_id":"115002","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4406326236","display_name":null,"funder_award_id":"115735","funder_id":"https://openalex.org/F4320326631","funder_display_name":"Innovative Medicines Initiative"},{"id":"https://openalex.org/G4413410256","display_name":null,"funder_award_id":"2007-13","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4439374236","display_name":null,"funder_award_id":"115002","funder_id":"https://openalex.org/F4320314178","funder_display_name":"European Federation of Pharmaceutical Industries and Associations"},{"id":"https://openalex.org/G4917471619","display_name":null,"funder_award_id":"GM089820","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5440316326","display_name":null,"funder_award_id":"CP10/00524","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G5702163051","display_name":null,"funder_award_id":"FP7/2007","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6382720711","display_name":null,"funder_award_id":"115372","funder_id":"https://openalex.org/F4320314178","funder_display_name":"European Federation of Pharmaceutical Industries and Associations"},{"id":"https://openalex.org/G6456714180","display_name":"The Open Pharmacological Concepts Triple Store","funder_award_id":"115191","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6574697119","display_name":null,"funder_award_id":"676559","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G659062546","display_name":null,"funder_award_id":"115002","funder_id":"https://openalex.org/F4320326631","funder_display_name":"Innovative Medicines Initiative"},{"id":"https://openalex.org/G7118819227","display_name":null,"funder_award_id":"2007-13","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G7231943246","display_name":null,"funder_award_id":"Horizon 2020 Programme","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7535289602","display_name":null,"funder_award_id":"676559","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G8214758122","display_name":"European Medical Information Framework","funder_award_id":"115372","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8217424323","display_name":null,"funder_award_id":"TR001114","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8646936266","display_name":null,"funder_award_id":"115002","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G8655434959","display_name":"Intelligent Assessment of Pharmaceutical in the Environment","funder_award_id":"115735","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8720148096","display_name":"Creating medically-driven integrative bioinformatics applications focused on oncology, CNS disorders and their comorbidities (MedBioinformatics)","funder_award_id":"634143","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8823472414","display_name":null,"funder_award_id":"GM114833","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8826631963","display_name":null,"funder_award_id":"Horizon 2020 Program","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320314178","display_name":"European Federation of Pharmaceutical Industries and Associations","ror":"https://ror.org/00g1x4v36"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320326631","display_name":"Innovative Medicines Initiative","ror":"https://ror.org/019af4n30"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334923","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2429565568.pdf","grobid_xml":"https://content.openalex.org/works/W2429565568.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W826376736","https://openalex.org/W1601495365","https://openalex.org/W1971048089","https://openalex.org/W1988218034","https://openalex.org/W1997680883","https://openalex.org/W2014139771","https://openalex.org/W2030531674","https://openalex.org/W2091155135","https://openalex.org/W2101013878","https://openalex.org/W2104088534","https://openalex.org/W2121111666","https://openalex.org/W2121244856","https://openalex.org/W2136437513","https://openalex.org/W2138768461","https://openalex.org/W2142016317","https://openalex.org/W2142572836","https://openalex.org/W2150288223","https://openalex.org/W2153401380","https://openalex.org/W2156235098","https://openalex.org/W2165798627","https://openalex.org/W2169491861","https://openalex.org/W2335791510","https://openalex.org/W6674934153"],"related_works":["https://openalex.org/W3032998312","https://openalex.org/W4384486036","https://openalex.org/W135177976","https://openalex.org/W1503094549","https://openalex.org/W2337920774","https://openalex.org/W4318823662","https://openalex.org/W2886410948","https://openalex.org/W2025875869","https://openalex.org/W3207526114","https://openalex.org/W4286908577"],"abstract_inverted_index":{"Drug":[0],"toxicity":[1],"is":[2,102,114],"a":[3,44,136],"major":[4],"concern":[5],"for":[6,19,31,47,153,188,203],"both":[7,104],"regulatory":[8],"agencies":[9],"and":[10,63,107,135,186,193],"the":[11,20,32,54,73,96,99,117,126,131,148,157,160,164,167,171,181,195,205,208],"pharmaceutical":[12],"industry.":[13],"In":[14,159],"this":[15],"context,":[16],"text-mining":[17],"methods":[18],"identification":[21,48],"of":[22,34,49,76,145,156,170,184,190,197,207,213],"drug":[23,39,50,214],"side":[24,51,215],"effects":[25,52],"from":[26,53,147],"free":[27],"text":[28,211],"are":[29],"key":[30],"development":[33],"up-to-date":[35],"knowledge":[36],"sources":[37],"on":[38,92,116],"adverse":[40],"reactions.":[41],"We":[42],"present":[43],"new":[45,137],"system":[46,67,119,165],"literature":[55],"that":[56],"combines":[57],"three":[58,149],"approaches:":[59],"machine":[60,111],"learning,":[61],"rule-":[62],"knowledge-based":[64,100],"approaches.":[65],"This":[66],"has":[68],"been":[69],"developed":[70,140],"to":[71],"address":[72],"Task":[74],"3.B":[75],"Biocreative":[77],"V":[78],"challenge":[79,172],"(BC5)":[80],"dealing":[81],"with":[82],"Chemical-induced":[83],"Disease":[84],"(CID)":[85],"relations.":[86],"The":[87,110],"first":[88],"two":[89,121],"approaches":[90],"focus":[91],"identifying":[93],"relations":[94],"at":[95,105],"sentence-level,":[97],"while":[98],"approach":[101],"applied":[103],"sentence":[106],"abstract":[108],"levels.":[109],"learning":[112],"method":[113],"based":[115],"BeFree":[118],"using":[120],"corpora":[122],"as":[123],"training":[124],"data:":[125],"annotated":[127],"data":[128,201],"provided":[129],"by":[130,141],"CID":[132,138],"task":[133],"organizers":[134],"corpus":[139],"crowdsourcing.":[142],"Different":[143],"combinations":[144],"results":[146],"strategies":[150],"were":[151],"selected":[152],"each":[154],"run":[155],"challenge.":[158],"final":[161],"evaluation":[162],"setting,":[163],"achieved":[166],"highest":[168],"Recall":[169],"(63%).":[173],"By":[174],"performing":[175],"an":[176],"error":[177],"analysis,":[178],"we":[179],"identified":[180],"main":[182],"causes":[183],"misclassifications":[185],"areas":[187],"improving":[189],"our":[191],"system,":[192],"highlighted":[194],"need":[196],"consistent":[198],"gold":[199],"standard":[200],"sets":[202],"advancing":[204],"state":[206],"art":[209],"in":[210],"mining":[212],"effects.Database":[216],"URL:":[217],"https://zenodo.org/record/29887?ln\u00bcen#.VsL3yDLWR_V.":[218]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
